/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2009 Stanford University and the Authors. * * Authors: Rossen P. Apostolov, Peter Eastman * * Contributors: * * * * This program is free software: you can redistribute it and/or modify * * it under the terms of the GNU Lesser General Public License as published * * by the Free Software Foundation, either version 3 of the License, or * * (at your option) any later version. * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * * GNU Lesser General Public License for more details. * * * * You should have received a copy of the GNU Lesser General Public License * * along with this program. If not, see . * * -------------------------------------------------------------------------- */ /** * This file contains the kernel for evaluating nonbonded forces using the * Ewald summation method (Reciprocal space summation). */ __global__ void kCalculateCDLJEwaldReciprocalForces_kernel() { float eps0 = 5.72765E-4; int numRx = 20+1; int numRy = 20+1; int numRz = 20+1; int lowry, lowrz; float kx, ky, kz, k2, ek; float Qi, Qj, SinI, SinJ, CosI, CosJ; float V = cSim.cellVolume; float4 apos1, apos2 ; // i nteracting atoms float4 af; // atomic force unsigned int atomID1 = threadIdx.x + blockIdx.x * blockDim.x; while (atomID1 < cSim.atoms) { apos1 = cSim.pPosq[atomID1]; af = cSim.pForce4[atomID1]; unsigned int atomID2 = 0; while (atomID2 < cSim.atoms) { apos2 = cSim.pPosq[atomID2]; lowry = 0; lowrz = 1; for(int rx = 0; rx < numRx; rx++) { kx = rx * cSim.recipBoxSizeX; for(int ry = lowry; ry < numRy; ry++) { ky = ry * cSim.recipBoxSizeY; for (int rz = lowrz; rz < numRz; rz++) { kz = rz * cSim.recipBoxSizeZ; k2 = kx * kx + ky * ky + kz * kz; ek = exp ( k2 * cSim.factorEwald); Qi = apos1.w ; Qj = apos2.w ; SinI = sin ( kx * apos1.x + ky * apos1.y + kz * apos1.z ); SinJ = sin ( kx * apos2.x + ky * apos2.y + kz * apos2.z ); CosI = cos ( kx * apos1.x + ky * apos1.y + kz * apos1.z ); CosJ = cos ( kx * apos2.x + ky * apos2.y + kz * apos2.z ); af.x -= (2.0 / (V * eps0 )) * Qi * ( kx/k2) * ek * ( - SinI * Qj * CosJ + CosI * Qj * SinJ); af.y -= (2.0 / (V * eps0 )) * Qi * ( ky/k2) * ek * ( - SinI * Qj * CosJ + CosI * Qj * SinJ); af.z -= (2.0 / (V * eps0 )) * Qi * ( kz/k2) * ek * ( - SinI * Qj * CosJ + CosI * Qj * SinJ); lowrz = 1 - numRz; } lowry = 1 - numRy; } } atomID2++; } cSim.pForce4[atomID1] = af; atomID1 += blockDim.x * gridDim.x; } }