/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2009 Stanford University and the Authors. * * Authors: Rossen P. Apostolov, Peter Eastman * * Contributors: * * * * This program is free software: you can redistribute it and/or modify * * it under the terms of the GNU Lesser General Public License as published * * by the Free Software Foundation, either version 3 of the License, or * * (at your option) any later version. * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * * GNU Lesser General Public License for more details. * * * * You should have received a copy of the GNU Lesser General Public License * * along with this program. If not, see . * * -------------------------------------------------------------------------- */ /** * This file contains the kernel for evaluating nonbonded forces using the * Ewald summation method (Reciprocal space summation). */ __global__ void kCalculateCDLJEwaldReciprocalForces_kernel() { const float eps0 = 1.0f/(4.0f*3.1415926535f*cSim.epsfac); unsigned int atomID1 = threadIdx.x + blockIdx.x * blockDim.x; while (atomID1 < cSim.atoms) { float4 apos1 = cSim.pPosq[atomID1]; float4 af = cSim.pForce4[atomID1]; unsigned int atomID2 = 0; while (atomID2 < cSim.atoms) { float4 apos2 = cSim.pPosq[atomID2]; float scale = 2.0f*apos1.w*apos2.w/(cSim.cellVolume*eps0); int lowry = 0; int lowrz = 1; for(int rx = 0; rx < cSim.kmaxX; rx++) { float kx = rx*cSim.recipBoxSizeX; for(int ry = lowry; ry < cSim.kmaxY; ry++) { float ky = ry*cSim.recipBoxSizeY; for (int rz = lowrz; rz < cSim.kmaxZ; rz++) { float kz = rz*cSim.recipBoxSizeZ; float k2 = kx*kx + ky*ky + kz*kz; float ek = exp(k2*cSim.factorEwald); float arg1 = kx*apos1.x + ky*apos1.y + kz*apos1.z; float arg2 = kx*apos2.x + ky*apos2.y + kz*apos2.z; float sinI = sinf(arg1); float sinJ = sinf(arg2); float cosI = cosf(arg1); float cosJ = cosf(arg2); float f = scale * ek * (-sinI*cosJ + cosI*sinJ) / k2; af.x -= kx*f; af.y -= ky*f; af.z -= kz*f; lowrz = 1 - cSim.kmaxZ; } lowry = 1 - cSim.kmaxY; } } atomID2++; } cSim.pForce4[atomID1] = af; atomID1 += blockDim.x * gridDim.x; } }