/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2009 Stanford University and the Authors. * * Authors: Scott Le Grand, Peter Eastman * * Contributors: * * * * This program is free software: you can redistribute it and/or modify * * it under the terms of the GNU Lesser General Public License as published * * by the Free Software Foundation, either version 3 of the License, or * * (at your option) any later version. * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * * GNU Lesser General Public License for more details. * * * * You should have received a copy of the GNU Lesser General Public License * * along with this program. If not, see . * * -------------------------------------------------------------------------- */ #include "cudaKernels.h" #include "amoebaCudaKernels.h" #include "kCalculateAmoebaCudaUtilities.h" #include "kCalculateAmoebaCudaKirkwoodParticle.h" extern void kCalculateObcGbsaForces2(gpuContext gpu); static __constant__ cudaGmxSimulation cSim; static __constant__ cudaAmoebaGmxSimulation cAmoebaSim; void SetCalculateAmoebaKirkwoodSim(amoebaGpuContext amoebaGpu) { cudaError_t status; gpuContext gpu = amoebaGpu->gpuContext; status = cudaMemcpyToSymbol(cSim, &gpu->sim, sizeof(cudaGmxSimulation)); RTERROR(status, "SetCalculateAmoebaKirkwoodSim: cudaMemcpyToSymbol: SetSim copy to cSim failed"); status = cudaMemcpyToSymbol(cAmoebaSim, &amoebaGpu->amoebaSim, sizeof(cudaAmoebaGmxSimulation)); RTERROR(status, "SetCalculateAmoebaKirkwoodSim: cudaMemcpyToSymbol: SetSim copy to cAmoebaSim failed"); } void GetCalculateAmoebaKirkwoodSim(amoebaGpuContext amoebaGpu) { cudaError_t status; gpuContext gpu = amoebaGpu->gpuContext; status = cudaMemcpyFromSymbol(&gpu->sim, cSim, sizeof(cudaGmxSimulation)); RTERROR(status, "GetCalculateAmoebaKirkwoodSim: cudaMemcpyFromSymbol: SetSim copy from cSim failed"); status = cudaMemcpyFromSymbol(&amoebaGpu->amoebaSim, cAmoebaSim, sizeof(cudaAmoebaGmxSimulation)); RTERROR(status, "GetCalculateAmoebaKirkwoodSim: cudaMemcpyFromSymbol: SetSim copy from cAmoebaSim failed"); } __device__ void loadKirkwoodShared( struct KirkwoodParticle* sA, unsigned int atomI ) { // coordinates & charge sA->x = cSim.pPosq[atomI].x; sA->y = cSim.pPosq[atomI].y; sA->z = cSim.pPosq[atomI].z; sA->q = cSim.pPosq[atomI].w; // lab dipole sA->labFrameDipole[0] = cAmoebaSim.pLabFrameDipole[atomI*3]; sA->labFrameDipole[1] = cAmoebaSim.pLabFrameDipole[atomI*3+1]; sA->labFrameDipole[2] = cAmoebaSim.pLabFrameDipole[atomI*3+2]; // lab quadrupole sA->labFrameQuadrupole_XX = cAmoebaSim.pLabFrameQuadrupole[atomI*9]; sA->labFrameQuadrupole_XY = cAmoebaSim.pLabFrameQuadrupole[atomI*9+1]; sA->labFrameQuadrupole_XZ = cAmoebaSim.pLabFrameQuadrupole[atomI*9+2]; sA->labFrameQuadrupole_YY = cAmoebaSim.pLabFrameQuadrupole[atomI*9+4]; sA->labFrameQuadrupole_YZ = cAmoebaSim.pLabFrameQuadrupole[atomI*9+5]; //sA->labFrameQuadrupole_ZZ = cAmoebaSim.pLabFrameQuadrupole[atomI*9+8]; sA->labFrameQuadrupole_ZZ = -(sA->labFrameQuadrupole_XX + sA->labFrameQuadrupole_YY); // induced dipole sA->inducedDipole[0] = cAmoebaSim.pInducedDipoleS[atomI*3]; sA->inducedDipole[1] = cAmoebaSim.pInducedDipoleS[atomI*3+1]; sA->inducedDipole[2] = cAmoebaSim.pInducedDipoleS[atomI*3+2]; // induced dipole polar sA->inducedDipoleP[0] = cAmoebaSim.pInducedDipolePolarS[atomI*3]; sA->inducedDipoleP[1] = cAmoebaSim.pInducedDipolePolarS[atomI*3+1]; sA->inducedDipoleP[2] = cAmoebaSim.pInducedDipolePolarS[atomI*3+2]; sA->bornRadius = cSim.pBornRadii[atomI]; } __device__ void calculateKirkwoodPairIxnOrig_kernel( KirkwoodParticle& atomI, KirkwoodParticle& atomJ, float* outputForce, float outputTorque[2][3], float* outputBorn, float* outputBornPolar, float* outputEnergy ){ float e,ei; float xr,yr,zr; float xr2,yr2,zr2; float sxi,syi,szi; float sxk,syk,szk; float r2,rb2; float dedx,dedy,dedz; float drbi; float drbk; float dpdx,dpdy,dpdz; float dpbi; float dpbk; float fc,fd,fq; float expterm; float gf,gf2,gf3,gf5; float gf7,gf9,gf11; float expc,dexpc; float expc1,expcdexpc; float expcr,dexpcr; float dgfdr; float esym,ewi,ewk; float desymdx,dewidx,dewkdx; float desymdy,dewidy,dewkdy; float desymdz,dewidz,dewkdz; float dsumdr,desymdr; float dewidr,dewkdr; float dsymdr; float esymi,ewii,ewki; float dpwidx,dpwkdx; float dpsymdy,dpwidy,dpwkdy; float dpsymdz,dpwidz,dpwkdz; float dwipdr,dwkpdr; float duvdr; // set the bulk dielectric constant to the water value fc = cAmoebaSim.electric * cAmoebaSim.fc; fd = cAmoebaSim.electric * cAmoebaSim.fd; fq = cAmoebaSim.electric * cAmoebaSim.fq; sxi = atomI.inducedDipole[0] + atomI.inducedDipoleP[0]; syi = atomI.inducedDipole[1] + atomI.inducedDipoleP[1]; szi = atomI.inducedDipole[2] + atomI.inducedDipoleP[2]; // decide whether to compute the current interaction; xr = atomJ.x - atomI.x; yr = atomJ.y - atomI.y; zr = atomJ.z - atomI.z; xr2 = xr*xr; yr2 = yr*yr; zr2 = zr*zr; r2 = xr2 + yr2 + zr2; if( r2 > cAmoebaSim.scalingDistanceCutoff ){ } sxk = atomJ.inducedDipole[0] + atomJ.inducedDipoleP[0]; syk = atomJ.inducedDipole[1] + atomJ.inducedDipoleP[1]; szk = atomJ.inducedDipole[2] + atomJ.inducedDipoleP[2]; rb2 = atomI.bornRadius*atomJ.bornRadius; expterm = expf(-r2/(cAmoebaSim.gkc*rb2)); expc = expterm/cAmoebaSim.gkc; expcr = r2*expterm/(cAmoebaSim.gkc*cAmoebaSim.gkc*rb2*rb2); dexpc = -2.0f / (cAmoebaSim.gkc*rb2); dexpcr = 2.0f / (cAmoebaSim.gkc*rb2*rb2); dgfdr = 0.5f * expterm * (1.0f+r2/(rb2*cAmoebaSim.gkc)); gf2 = 1.0f / (r2+rb2*expterm); gf = sqrt(gf2); gf3 = gf2 * gf; gf5 = gf3 * gf2; gf7 = gf5 * gf2; gf9 = gf7 * gf2; gf11 = gf9 * gf2; // reaction potential auxiliary terms; float a00 = gf; float a10 = -gf3; float a20 = 3.0f * gf5; float a30 = -15.0f * gf7; float a40 = 105.0f * gf9; float a50 = -945.0f * gf11; // Born radii derivatives of reaction potential auxiliary terms; float b00 = dgfdr * a10; float b10 = dgfdr * a20; float b20 = dgfdr * a30; float b30 = dgfdr * a40; float b40 = dgfdr * a50; // reaction potential gradient auxiliary terms; expc1 = 1.0f - expc; float a01 = expc1 * a10; float a11 = expc1 * a20; float a21 = expc1 * a30; float a31 = expc1 * a40; float a41 = expc1 * a50; // Born radii derivs of reaction potential gradient auxiliary terms; float b01 = b10 - expcr*a10 - expc*b10; float b11 = b20 - expcr*a20 - expc*b20; float b21 = b30 - expcr*a30 - expc*b30; float b31 = b40 - expcr*a40 - expc*b40; // 2nd reaction potential gradient auxiliary terms; expcdexpc = -expc * dexpc; float a02 = expc1*a11 + expcdexpc*a10; float a12 = expc1*a21 + expcdexpc*a20; float a22 = expc1*a31 + expcdexpc*a30; float a32 = expc1*a41 + expcdexpc*a40; // Born radii derivatives of the 2nd reaction potential // gradient auxiliary terms float b02 = b11 - (expcr*(a11 + dexpc*a10) + expc*(b11 + dexpcr*a10+dexpc*b10)); float b12 = b21 - (expcr*(a21 + dexpc*a20) + expc*(b21 + dexpcr*a20+dexpc*b20)); float b22 = b31 - (expcr*(a31 + dexpc*a30) + expc*(b31 + dexpcr*a30+dexpc*b30)); // 3rd reaction potential gradient auxiliary terms expcdexpc = 2.0f * expcdexpc; float a03 = expc1*a12 + expcdexpc*a11; float a13 = expc1*a22 + expcdexpc*a21; float a23 = expc1*a32 + expcdexpc*a31; expcdexpc = -expc*dexpc*dexpc; a03 = a03 + expcdexpc*a10; a13 = a13 + expcdexpc*a20; a23 = a23 + expcdexpc*a30; // multiply the auxillary terms by their dieletric functions; a00 *= fc; a01 *= fc; a02 *= fc; a03 *= fc; b00 *= fc; b01 *= fc; b02 *= fc; a10 *= fd; a11 *= fd; a12 *= fd; a13 *= fd; b10 *= fd; b11 *= fd; b12 *= fd; a20 *= fq; a21 *= fq; a22 *= fq; a23 *= fq; b20 *= fq; b21 *= fq; b22 *= fq; // unweighted reaction potential tensor float gc1 = a00; float gux1 = xr * a10; float guy1 = yr * a10; float guz1 = zr * a10; float gqxx1 = xr2 * a20; float gqyy1 = yr2 * a20; float gqzz1 = zr2 * a20; float gqxy1 = xr * yr * a20; float gqxz1 = xr * zr * a20; float gqyz1 = yr * zr * a20; // Born radii derivs of unweighted reaction potential tensor float gc21 = b00; float gux21 = xr * b10; float guy21 = yr * b10; float guz21 = zr * b10; float gqxx21 = xr2 * b20; float gqyy21 = yr2 * b20; float gqzz21 = zr2 * b20; float gqxy21 = xr * yr * b20; float gqxz21 = xr * zr * b20; float gqyz21 = yr * zr * b20; // unweighted reaction potential gradient tensor; float gc2 = xr * a01; float gc3 = yr * a01; float gc4 = zr * a01; float gux2 = a10 + xr2*a11; float gux3 = xr * yr * a11; float gux4 = xr * zr * a11; float guy2 = gux3; float guy3 = a10 + yr2*a11; float guy4 = yr * zr * a11; float guz2 = gux4; float guz3 = guy4; float guz4 = a10 + zr2*a11; float gqxx2 = xr * (2.0f*a20+xr2*a21); float gqxx3 = yr * xr2 * a21; float gqxx4 = zr * xr2 * a21; float gqyy2 = xr * yr2 * a21; float gqyy3 = yr * (2.0f*a20+yr2*a21); float gqyy4 = zr * yr2 * a21; float gqzz2 = xr * zr2 * a21; float gqzz3 = yr * zr2 * a21; float gqzz4 = zr * (2.0f*a20+zr2*a21); float gqxy2 = yr * (a20+xr2*a21); float gqxy3 = xr * (a20+yr2*a21); float gqxy4 = zr * xr * yr * a21; float gqxz2 = zr * (a20+xr2*a21); float gqxz3 = gqxy4; float gqxz4 = xr * (a20+zr2*a21); float gqyz2 = gqxy4; float gqyz3 = zr * (a20+yr2*a21); float gqyz4 = yr * (a20+zr2*a21); // Born derivs of the unweighted reaction potential gradient tensor float gc22 = xr * b01; float gc23 = yr * b01; float gc24 = zr * b01; float gux22 = b10 + xr2*b11; float gux23 = xr * yr * b11; float gux24 = xr * zr * b11; float guy22 = gux23; float guy23 = b10 + yr2*b11; float guy24 = yr * zr * b11; float guz22 = gux24; float guz23 = guy24; float guz24 = b10 + zr2*b11; float gqxx22 = xr * (2.0f*b20+xr2*b21); float gqxx23 = yr * xr2 * b21; float gqxx24 = zr * xr2 * b21; float gqyy22 = xr * yr2 * b21; float gqyy23 = yr * (2.0f*b20+yr2*b21); float gqyy24 = zr * yr2 * b21; float gqzz22 = xr * zr2 * b21; float gqzz23 = yr * zr2 * b21; float gqzz24 = zr * (2.0f*b20 + zr2*b21); float gqxy22 = yr * (b20+xr2*b21); float gqxy23 = xr * (b20+yr2*b21); float gqxy24 = zr * xr * yr * b21; float gqxz22 = zr * (b20+xr2*b21); float gqxz23 = gqxy24; float gqxz24 = xr * (b20+zr2*b21); float gqyz22 = gqxy24; float gqyz23 = zr * (b20+yr2*b21); float gqyz24 = yr * (b20+zr2*b21); // unweighted 2nd reaction potential gradient tensor; float gc5 = a01 + xr2*a02; float gc6 = xr * yr * a02; float gc7 = xr * zr * a02; float gc8 = a01 + yr2*a02; float gc9 = yr * zr * a02; float gc10 = a01 + zr2*a02; float gux5 = xr * (3.0f*a11+xr2*a12); float gux6 = yr * (a11+xr2*a12); float gux7 = zr * (a11+xr2*a12); float gux8 = xr * (a11+yr2*a12); float gux9 = zr * xr * yr * a12; float gux10 = xr * (a11+zr2*a12); float guy5 = yr * (a11+xr2*a12); float guy6 = xr * (a11+yr2*a12); float guy7 = gux9; float guy8 = yr * (3.0f*a11+yr2*a12); float guy9 = zr * (a11+yr2*a12); float guy10 = yr * (a11+zr2*a12); float guz5 = zr * (a11+xr2*a12); float guz6 = gux9; float guz7 = xr * (a11+zr2*a12); float guz8 = zr * (a11+yr2*a12); float guz9 = yr * (a11+zr2*a12); float guz10 = zr * (3.0f*a11+zr2*a12); float gqxx5 = 2.0f*a20 + xr2*(5.0f*a21+xr2*a22); float gqxx6 = yr * xr * (2.0f*a21+xr2*a22); float gqxx7 = zr * xr * (2.0f*a21+xr2*a22); float gqxx8 = xr2 * (a21+yr2*a22); float gqxx9 = zr * yr * xr2 * a22; float gqxx10 = xr2 * (a21+zr2*a22); float gqyy5 = yr2 * (a21+xr2*a22); float gqyy6 = xr * yr * (2.0f*a21+yr2*a22); float gqyy7 = xr * zr * yr2 * a22; float gqyy8 = 2.0f*a20 + yr2*(5.0f*a21+yr2*a22); float gqyy9 = yr * zr * (2.0f*a21+yr2*a22); float gqyy10 = yr2 * (a21+zr2*a22); float gqzz5 = zr2 * (a21+xr2*a22); float gqzz6 = xr * yr * zr2 * a22; float gqzz7 = xr * zr * (2.0f*a21+zr2*a22); float gqzz8 = zr2 * (a21+yr2*a22); float gqzz9 = yr * zr * (2.0f*a21+zr2*a22); float gqzz10 = 2.0f*a20 + zr2*(5.0f*a21+zr2*a22); float gqxy5 = xr * yr * (3.0f*a21+xr2*a22); float gqxy6 = a20 + (xr2+yr2)*a21 + xr2*yr2*a22; float gqxy7 = zr * yr * (a21+xr2*a22); float gqxy8 = xr * yr * (3.0f*a21+yr2*a22); float gqxy9 = zr * xr * (a21+yr2*a22); float gqxy10 = xr * yr * (a21+zr2*a22); float gqxz5 = xr * zr * (3.0f*a21+xr2*a22); float gqxz6 = yr * zr * (a21+xr2*a22); float gqxz7 = a20 + (xr2+zr2)*a21 + xr2*zr2*a22; float gqxz8 = xr * zr * (a21+yr2*a22); float gqxz9 = xr * yr * (a21+zr2*a22); float gqxz10 = xr * zr * (3.0f*a21+zr2*a22); float gqyz5 = zr * yr * (a21+xr2*a22); float gqyz6 = xr * zr * (a21+yr2*a22); float gqyz7 = xr * yr * (a21+zr2*a22); float gqyz8 = yr * zr * (3.0f*a21+yr2*a22); float gqyz9 = a20 + (yr2+zr2)*a21 + yr2*zr2*a22; float gqyz10 = yr * zr * (3.0f*a21+zr2*a22); // Born radii derivatives of the unweighted 2nd reaction; // potential gradient tensor; float gc25 = b01 + xr2*b02; float gc26 = xr * yr * b02; float gc27 = xr * zr * b02; float gc28 = b01 + yr2*b02; float gc29 = yr * zr * b02; float gc30 = b01 + zr2*b02; float gux25 = xr * (3.0f*b11+xr2*b12); float gux26 = yr * (b11+xr2*b12); float gux27 = zr * (b11+xr2*b12); float gux28 = xr * (b11+yr2*b12); float gux29 = zr * xr * yr * b12; float gux30 = xr * (b11+zr2*b12); float guy25 = yr * (b11+xr2*b12); float guy26 = xr * (b11+yr2*b12); float guy27 = gux29; float guy28 = yr * (3.0f*b11+yr2*b12); float guy29 = zr * (b11+yr2*b12); float guy30 = yr * (b11+zr2*b12); float guz25 = zr * (b11+xr2*b12); float guz26 = gux29; float guz27 = xr * (b11+zr2*b12); float guz28 = zr * (b11+yr2*b12); float guz29 = yr * (b11+zr2*b12); float guz30 = zr * (3.0f*b11+zr2*b12); float gqxx25 = 2.0f*b20 + xr2*(5.0f*b21+xr2*b22); float gqxx26 = yr * xr * (2.0f*b21+xr2*b22); float gqxx27 = zr * xr * (2.0f*b21+xr2*b22); float gqxx28 = xr2 * (b21+yr2*b22); float gqxx29 = zr * yr * xr2 * b22; float gqxx30 = xr2 * (b21+zr2*b22); float gqyy25 = yr2 * (b21+xr2*b22); float gqyy26 = xr * yr * (2.0f*b21+yr2*b22); float gqyy27 = xr * zr * yr2 * b22; float gqyy28 = 2.0f*b20 + yr2*(5.0f*b21+yr2*b22); float gqyy29 = yr * zr * (2.0f*b21+yr2*b22); float gqyy30 = yr2 * (b21+zr2*b22); float gqzz25 = zr2 * (b21+xr2*b22); float gqzz26 = xr * yr * zr2 * b22; float gqzz27 = xr * zr * (2.0f*b21+zr2*b22); float gqzz28 = zr2 * (b21+yr2*b22); float gqzz29 = yr * zr * (2.0f*b21+zr2*b22); float gqzz30 = 2.0f*b20 + zr2*(5.0f*b21+zr2*b22); float gqxy25 = xr * yr * (3.0f*b21 + xr2*b22); float gqxy26 = b20 + (xr2+yr2)*b21 + xr2*yr2*b22; float gqxy27 = zr * yr * (b21+xr2*b22); float gqxy28 = xr * yr * (3.0f*b21+yr2*b22); float gqxy29 = zr * xr * (b21+yr2*b22); float gqxy30 = xr * yr * (b21+zr2*b22); float gqxz25 = xr * zr * (3.0f*b21+xr2*b22); float gqxz26 = yr * zr * (b21+xr2*b22); float gqxz27 = b20 + (xr2+zr2)*b21 + xr2*zr2*b22; float gqxz28 = xr * zr * (b21+yr2*b22); float gqxz29 = xr * yr * (b21+zr2*b22); float gqxz30 = xr * zr * (3.0f*b21+zr2*b22); float gqyz25 = zr * yr * (b21+xr2*b22); float gqyz26 = xr * zr * (b21+yr2*b22); float gqyz27 = xr * yr * (b21+zr2*b22); float gqyz28 = yr * zr * (3.0f*b21+yr2*b22); float gqyz29 = b20 + (yr2+zr2)*b21 + yr2*zr2*b22; float gqyz30 = yr * zr * (3.0f*b21+zr2*b22); // unweighted 3rd reaction potential gradient tensor; float gc11 = xr * (3.0f*a02+xr2*a03); float gc12 = yr * (a02+xr2*a03); float gc13 = zr * (a02+xr2*a03); float gc14 = xr * (a02+yr2*a03); float gc15 = xr * yr * zr * a03; float gc16 = xr * (a02+zr2*a03); float gc17 = yr * (3.0f*a02+yr2*a03); float gc18 = zr * (a02+yr2*a03); float gc19 = yr * (a02+zr2*a03); float gc20 = zr * (3.0f*a02+zr2*a03); float gux11 = 3.0f*a11 + xr2*(6.0f*a12+xr2*a13); float gux12 = xr * yr * (3.0f*a12+xr2*a13); float gux13 = xr * zr * (3.0f*a12+xr2*a13); float gux14 = a11 + (xr2+yr2)*a12 + xr2*yr2*a13; float gux15 = yr * zr * (a12+xr2*a13); float gux16 = a11 + (xr2+zr2)*a12 + xr2*zr2*a13; float gux17 = xr * yr * (3.0f*a12+yr2*a13); float gux18 = xr * zr * (a12+yr2*a13); float gux19 = xr * yr * (a12+zr2*a13); float gux20 = xr * zr * (3.0f*a12+zr2*a13); float guy11 = gux12; float guy12 = gux14; float guy13 = gux15; float guy14 = gux17; float guy15 = gux18; float guy16 = gux19; float guy17 = 3.0f*a11 + yr2*(6.0f*a12+yr2*a13); float guy18 = yr * zr * (3.0f*a12+yr2*a13); float guy19 = a11 + (yr2+zr2)*a12 + yr2*zr2*a13; float guy20 = yr * zr * (3.0f*a12+zr2*a13); float guz11 = gux13; float guz12 = gux15; float guz13 = gux16; float guz14 = gux18; float guz15 = gux19; float guz16 = gux20; float guz17 = guy18; float guz18 = guy19; float guz19 = guy20; float guz20 = 3.0f*a11 + zr2*(6.0f*a12+zr2*a13); float gqxx11 = xr * (12.0f*a21+xr2*(9.0f*a22 + xr2*a23)); float gqxx12 = yr * (2.0f*a21+xr2*(5.0f*a22 + xr2*a23)); float gqxx13 = zr * (2.0f*a21+xr2*(5.0f*a22 + xr2*a23)); float gqxx14 = xr * (2.0f*a21+yr2*2.0f*a22 +xr2*(a22+yr2*a23)); float gqxx15 = xr * yr * zr * (2.0f*a22+xr2*a23); float gqxx16 = xr * (2.0f*a21+zr2*2.0f*a22 +xr2*(a22+zr2*a23)); float gqxx17 = yr * xr2 * (3.0f*a22+yr2*a23); float gqxx18 = zr * xr2 * (a22+yr2*a23); float gqxx19 = yr * xr2 * (a22+zr2*a23); float gqxx20 = zr * xr2 * (3.0f*a22+zr2*a23); float gqxy11 = yr * (3.0f*a21+xr2*(6.0f*a22 +xr2*a23)); float gqxy12 = xr * (3.0f*(a21+yr2*a22) +xr2*(a22+yr2*a23)); float gqxy13 = xr * yr * zr * (3.0f*a22+xr2*a23); float gqxy14 = yr * (3.0f*(a21+xr2*a22) +yr2*(a22+xr2*a23)); float gqxy15 = zr * (a21+(yr2+xr2)*a22 +yr2*xr2*a23); float gqxy16 = yr * (a21+(xr2+zr2)*a22 +xr2*zr2*a23); float gqxy17 = xr * (3.0f*(a21+yr2*a22) +yr2*(3.0f*a22+yr2*a23)); float gqxy18 = xr * yr * zr * (3.0f*a22+yr2*a23); float gqxy19 = xr * (a21+(yr2+zr2)*a22 +yr2*zr2*a23); float gqxy20 = xr * yr * zr * (3.0f*a22+zr2*a23); float gqxz11 = zr * (3.0f*a21+xr2*(6.0f*a22 +xr2*a23)); float gqxz12 = xr * yr * zr * (3.0f*a22+xr2*a23); float gqxz13 = xr * (3.0f*(a21+zr2*a22) +xr2*(a22+zr2*a23)); float gqxz14 = zr * (a21+(xr2+yr2)*a22 +xr2*yr2*a23); float gqxz15 = yr * (a21+(xr2+zr2)*a22 +zr2*xr2*a23); float gqxz16 = zr * (3.0f*(a21+xr2*a22) +zr2*(a22+xr2*a23)); float gqxz17 = xr * yr * zr * (3.0f*a22+yr2*a23); float gqxz18 = xr * (a21+(zr2+yr2)*a22 +zr2*yr2*a23); float gqxz19 = xr * yr * zr * (3.0f*a22+zr2*a23); float gqxz20 = xr * (3.0f*a21+zr2*(6.0f*a22 +zr2*a23)); float gqyy11 = xr * yr2 * (3.0f*a22+xr2*a23); float gqyy12 = yr * (2.0f*a21+xr2*2.0f*a22 +yr2*(a22+xr2*a23)); float gqyy13 = zr * yr2 * (a22+xr2*a23); float gqyy14 = xr * (2.0f*a21+yr2*(5.0f*a22 +yr2*a23)); float gqyy15 = xr * yr * zr * (2.0f*a22+yr2*a23); float gqyy16 = xr * yr2 * (a22+zr2*a23); float gqyy17 = yr * (12.0f*a21+yr2*(9.0f*a22 +yr2*a23)); float gqyy18 = zr * (2.0f*a21+yr2*(5.0f*a22 +yr2*a23)); float gqyy19 = yr * (2.0f*a21+zr2*2.0f*a22 +yr2*(a22+zr2*a23)); float gqyy20 = zr * yr2 * (3.0f*a22+zr2*a23); float gqyz11 = xr * yr * zr * (3.0f*a22+xr2*a23); float gqyz12 = zr * (a21+(xr2+yr2)*a22 +xr2*yr2*a23); float gqyz13 = yr * (a21+(xr2+zr2)*a22 +xr2*zr2*a23); float gqyz14 = xr * yr * zr * (3.0f*a22+yr2*a23); float gqyz15 = xr * (a21+(yr2+zr2)*a22 +yr2*zr2*a23); float gqyz16 = xr * yr * zr * (3.0f*a22+zr2*a23); float gqyz17 = zr * (3.0f*a21+yr2*(6.0f*a22 +yr2*a23)); float gqyz18 = yr * (3.0f*(a21+zr2*a22) +yr2*(a22+zr2*a23)); float gqyz19 = zr * (3.0f*(a21+yr2*a22) +zr2*(a22+yr2*a23)); float gqyz20 = yr * (3.0f*a21+zr2*(6.0f*a22 +zr2*a23)); float gqzz11 = xr * zr2 * (3.0f*a22+xr2*a23); float gqzz12 = yr * (zr2*a22+xr2*(zr2*a23)); float gqzz13 = zr * (2.0f*a21+xr2*2.0f*a22 +zr2*(a22+xr2*a23)); float gqzz14 = xr * zr2 * (a22+yr2*a23); float gqzz15 = xr * yr * zr * (2.0f*a22+zr2*a23); float gqzz16 = xr * (2.0f*a21+zr2*(5.0f*a22 +zr2*a23)); float gqzz17 = yr * zr2 * (3.0f*a22+yr2*a23); float gqzz18 = zr * (2.0f*a21+yr2*2.0f*a22 +zr2*(a22+yr2*a23)); float gqzz19 = yr * (2.0f*a21+zr2*(5.0f*a22 +zr2*a23)); float gqzz20 = zr * (12.0f*a21+zr2*(9.0f*a22 +zr2*a23)); // electrostatic solvation energy of the permanent multipoles // in their own GK reaction potential esym = atomI.q * atomJ.q * gc1 - (atomI.labFrameDipole[0]*(atomJ.labFrameDipole[0]*gux2+atomJ.labFrameDipole[1]*guy2+atomJ.labFrameDipole[2]*guz2) + atomI.labFrameDipole[1]*(atomJ.labFrameDipole[0]*gux3+atomJ.labFrameDipole[1]*guy3+atomJ.labFrameDipole[2]*guz3) + atomI.labFrameDipole[2]*(atomJ.labFrameDipole[0]*gux4+atomJ.labFrameDipole[1]*guy4+atomJ.labFrameDipole[2]*guz4)); ewi = atomI.q*(atomJ.labFrameDipole[0]*gc2+atomJ.labFrameDipole[1]*gc3+atomJ.labFrameDipole[2]*gc4) -atomJ.q*(atomI.labFrameDipole[0]*gux1+atomI.labFrameDipole[1]*guy1+atomI.labFrameDipole[2]*guz1) +atomI.q*(atomJ.labFrameQuadrupole_XX*gc5+atomJ.labFrameQuadrupole_YY*gc8+atomJ.labFrameQuadrupole_ZZ*gc10 +2.0f*(atomJ.labFrameQuadrupole_XY*gc6+atomJ.labFrameQuadrupole_XZ*gc7+atomJ.labFrameQuadrupole_YZ*gc9)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gqxx1+atomI.labFrameQuadrupole_YY*gqyy1+atomI.labFrameQuadrupole_ZZ*gqzz1 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy1+atomI.labFrameQuadrupole_XZ*gqxz1+atomI.labFrameQuadrupole_YZ*gqyz1)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gux5+atomJ.labFrameQuadrupole_YY*gux8+atomJ.labFrameQuadrupole_ZZ*gux10 +2.0f*(atomJ.labFrameQuadrupole_XY*gux6+atomJ.labFrameQuadrupole_XZ*gux7+atomJ.labFrameQuadrupole_YZ*gux9)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*guy5+atomJ.labFrameQuadrupole_YY*guy8+atomJ.labFrameQuadrupole_ZZ*guy10 +2.0f*(atomJ.labFrameQuadrupole_XY*guy6+atomJ.labFrameQuadrupole_XZ*guy7+atomJ.labFrameQuadrupole_YZ*guy9)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*guz5+atomJ.labFrameQuadrupole_YY*guz8+atomJ.labFrameQuadrupole_ZZ*guz10 +2.0f*(atomJ.labFrameQuadrupole_XY*guz6+atomJ.labFrameQuadrupole_XZ*guz7+atomJ.labFrameQuadrupole_YZ*guz9)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gqxx2+atomI.labFrameQuadrupole_YY*gqyy2+atomI.labFrameQuadrupole_ZZ*gqzz2 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy2+atomI.labFrameQuadrupole_XZ*gqxz2+atomI.labFrameQuadrupole_YZ*gqyz2)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*gqxx3+atomI.labFrameQuadrupole_YY*gqyy3+atomI.labFrameQuadrupole_ZZ*gqzz3 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy3+atomI.labFrameQuadrupole_XZ*gqxz3+atomI.labFrameQuadrupole_YZ*gqyz3)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*gqxx4+atomI.labFrameQuadrupole_YY*gqyy4+atomI.labFrameQuadrupole_ZZ*gqzz4 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy4+atomI.labFrameQuadrupole_XZ*gqxz4+atomI.labFrameQuadrupole_YZ*gqyz4)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx5+atomJ.labFrameQuadrupole_YY*gqxx8+atomJ.labFrameQuadrupole_ZZ*gqxx10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxx6+atomJ.labFrameQuadrupole_XZ*gqxx7+atomJ.labFrameQuadrupole_YZ*gqxx9)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqyy5+atomJ.labFrameQuadrupole_YY*gqyy8+atomJ.labFrameQuadrupole_ZZ*gqyy10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyy6+atomJ.labFrameQuadrupole_XZ*gqyy7+atomJ.labFrameQuadrupole_YZ*gqyy9)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqzz5+atomJ.labFrameQuadrupole_YY*gqzz8+atomJ.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqzz6+atomJ.labFrameQuadrupole_XZ*gqzz7+atomJ.labFrameQuadrupole_YZ*gqzz9)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxy5+atomJ.labFrameQuadrupole_YY*gqxy8+atomJ.labFrameQuadrupole_ZZ*gqxy10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy6+atomJ.labFrameQuadrupole_XZ*gqxy7+atomJ.labFrameQuadrupole_YZ*gqxy9)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxz5+atomJ.labFrameQuadrupole_YY*gqxz8+atomJ.labFrameQuadrupole_ZZ*gqxz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxz6+atomJ.labFrameQuadrupole_XZ*gqxz7+atomJ.labFrameQuadrupole_YZ*gqxz9)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqyz5+atomJ.labFrameQuadrupole_YY*gqyz8+atomJ.labFrameQuadrupole_ZZ*gqyz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyz6+atomJ.labFrameQuadrupole_XZ*gqyz7+atomJ.labFrameQuadrupole_YZ*gqyz9))); ewk = atomI.q*(atomJ.labFrameDipole[0]*gux1+atomJ.labFrameDipole[1]*guy1+atomJ.labFrameDipole[2]*guz1) -atomJ.q*(atomI.labFrameDipole[0]*gc2+atomI.labFrameDipole[1]*gc3+atomI.labFrameDipole[2]*gc4) +atomI.q*(atomJ.labFrameQuadrupole_XX*gqxx1+atomJ.labFrameQuadrupole_YY*gqyy1+atomJ.labFrameQuadrupole_ZZ*gqzz1 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy1+atomJ.labFrameQuadrupole_XZ*gqxz1+atomJ.labFrameQuadrupole_YZ*gqyz1)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gc5+atomI.labFrameQuadrupole_YY*gc8+atomI.labFrameQuadrupole_ZZ*gc10 +2.0f*(atomI.labFrameQuadrupole_XY*gc6+atomI.labFrameQuadrupole_XZ*gc7+atomI.labFrameQuadrupole_YZ*gc9)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gqxx2+atomJ.labFrameQuadrupole_YY*gqyy2+atomJ.labFrameQuadrupole_ZZ*gqzz2 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy2+atomJ.labFrameQuadrupole_XZ*gqxz2+atomJ.labFrameQuadrupole_YZ*gqyz2)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*gqxx3+atomJ.labFrameQuadrupole_YY*gqyy3+atomJ.labFrameQuadrupole_ZZ*gqzz3 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy3+atomJ.labFrameQuadrupole_XZ*gqxz3+atomJ.labFrameQuadrupole_YZ*gqyz3)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*gqxx4+atomJ.labFrameQuadrupole_YY*gqyy4+atomJ.labFrameQuadrupole_ZZ*gqzz4 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy4+atomJ.labFrameQuadrupole_XZ*gqxz4+atomJ.labFrameQuadrupole_YZ*gqyz4)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gux5+atomI.labFrameQuadrupole_YY*gux8+atomI.labFrameQuadrupole_ZZ*gux10 +2.0f*(atomI.labFrameQuadrupole_XY*gux6+atomI.labFrameQuadrupole_XZ*gux7+atomI.labFrameQuadrupole_YZ*gux9)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*guy5+atomI.labFrameQuadrupole_YY*guy8+atomI.labFrameQuadrupole_ZZ*guy10 +2.0f*(atomI.labFrameQuadrupole_XY*guy6+atomI.labFrameQuadrupole_XZ*guy7+atomI.labFrameQuadrupole_YZ*guy9)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*guz5+atomI.labFrameQuadrupole_YY*guz8+atomI.labFrameQuadrupole_ZZ*guz10 +2.0f*(atomI.labFrameQuadrupole_XY*guz6+atomI.labFrameQuadrupole_XZ*guz7+atomI.labFrameQuadrupole_YZ*guz9)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx5+atomJ.labFrameQuadrupole_YY*gqyy5+atomJ.labFrameQuadrupole_ZZ*gqzz5 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy5+atomJ.labFrameQuadrupole_XZ*gqxz5+atomJ.labFrameQuadrupole_YZ*gqyz5)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqxx8+atomJ.labFrameQuadrupole_YY*gqyy8+atomJ.labFrameQuadrupole_ZZ*gqzz8 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy8+atomJ.labFrameQuadrupole_XZ*gqxz8+atomJ.labFrameQuadrupole_YZ*gqyz8)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqxx10+atomJ.labFrameQuadrupole_YY*gqyy10+atomJ.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy10+atomJ.labFrameQuadrupole_XZ*gqxz10+atomJ.labFrameQuadrupole_YZ*gqyz10)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxx6+atomJ.labFrameQuadrupole_YY*gqyy6+atomJ.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy6+atomJ.labFrameQuadrupole_XZ*gqxz6+atomJ.labFrameQuadrupole_YZ*gqyz6)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxx7+atomJ.labFrameQuadrupole_YY*gqyy7+atomJ.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy7+atomJ.labFrameQuadrupole_XZ*gqxz7+atomJ.labFrameQuadrupole_YZ*gqyz7)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqxx9+atomJ.labFrameQuadrupole_YY*gqyy9+atomJ.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy9+atomJ.labFrameQuadrupole_XZ*gqxz9+atomJ.labFrameQuadrupole_YZ*gqyz9))); desymdx = atomI.q * atomJ.q * gc2 - (atomI.labFrameDipole[0]*(atomJ.labFrameDipole[0]*gux5+atomJ.labFrameDipole[1]*guy5+atomJ.labFrameDipole[2]*guz5) + atomI.labFrameDipole[1]*(atomJ.labFrameDipole[0]*gux6+atomJ.labFrameDipole[1]*guy6+atomJ.labFrameDipole[2]*guz6) + atomI.labFrameDipole[2]*(atomJ.labFrameDipole[0]*gux7+atomJ.labFrameDipole[1]*guy7+atomJ.labFrameDipole[2]*guz7)); dewidx = atomI.q*(atomJ.labFrameDipole[0]*gc5+atomJ.labFrameDipole[1]*gc6+atomJ.labFrameDipole[2]*gc7) -atomJ.q*(atomI.labFrameDipole[0]*gux2+atomI.labFrameDipole[1]*guy2+atomI.labFrameDipole[2]*guz2) +atomI.q*(atomJ.labFrameQuadrupole_XX*gc11+atomJ.labFrameQuadrupole_YY*gc14+atomJ.labFrameQuadrupole_ZZ*gc16 +2.0f*(atomJ.labFrameQuadrupole_XY*gc12+atomJ.labFrameQuadrupole_XZ*gc13+atomJ.labFrameQuadrupole_YZ*gc15)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gqxx2+atomI.labFrameQuadrupole_YY*gqyy2+atomI.labFrameQuadrupole_ZZ*gqzz2 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy2+atomI.labFrameQuadrupole_XZ*gqxz2+atomI.labFrameQuadrupole_YZ*gqyz2)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gux11+atomJ.labFrameQuadrupole_YY*gux14+atomJ.labFrameQuadrupole_ZZ*gux16 +2.0f*(atomJ.labFrameQuadrupole_XY*gux12+atomJ.labFrameQuadrupole_XZ*gux13+atomJ.labFrameQuadrupole_YZ*gux15)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*guy11+atomJ.labFrameQuadrupole_YY*guy14+atomJ.labFrameQuadrupole_ZZ*guy16 +2.0f*(atomJ.labFrameQuadrupole_XY*guy12+atomJ.labFrameQuadrupole_XZ*guy13+atomJ.labFrameQuadrupole_YZ*guy15)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*guz11+atomJ.labFrameQuadrupole_YY*guz14+atomJ.labFrameQuadrupole_ZZ*guz16 +2.0f*(atomJ.labFrameQuadrupole_XY*guz12+atomJ.labFrameQuadrupole_XZ*guz13+atomJ.labFrameQuadrupole_YZ*guz15)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gqxx5+atomI.labFrameQuadrupole_YY*gqyy5+atomI.labFrameQuadrupole_ZZ*gqzz5 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy5+atomI.labFrameQuadrupole_XZ*gqxz5+atomI.labFrameQuadrupole_YZ*gqyz5)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*gqxx6+atomI.labFrameQuadrupole_YY*gqyy6+atomI.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy6+atomI.labFrameQuadrupole_XZ*gqxz6+atomI.labFrameQuadrupole_YZ*gqyz6)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*gqxx7+atomI.labFrameQuadrupole_YY*gqyy7+atomI.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy7+atomI.labFrameQuadrupole_XZ*gqxz7+atomI.labFrameQuadrupole_YZ*gqyz7)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx11+atomJ.labFrameQuadrupole_YY*gqxx14+atomJ.labFrameQuadrupole_ZZ*gqxx16 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxx12+atomJ.labFrameQuadrupole_XZ*gqxx13+atomJ.labFrameQuadrupole_YZ*gqxx15)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqyy11+atomJ.labFrameQuadrupole_YY*gqyy14+atomJ.labFrameQuadrupole_ZZ*gqyy16 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyy12+atomJ.labFrameQuadrupole_XZ*gqyy13+atomJ.labFrameQuadrupole_YZ*gqyy15)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqzz11+atomJ.labFrameQuadrupole_YY*gqzz14+atomJ.labFrameQuadrupole_ZZ*gqzz16 +2.0f*(atomJ.labFrameQuadrupole_XY*gqzz12+atomJ.labFrameQuadrupole_XZ*gqzz13+atomJ.labFrameQuadrupole_YZ*gqzz15)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxy11+atomJ.labFrameQuadrupole_YY*gqxy14+atomJ.labFrameQuadrupole_ZZ*gqxy16 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy12+atomJ.labFrameQuadrupole_XZ*gqxy13+atomJ.labFrameQuadrupole_YZ*gqxy15)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxz11+atomJ.labFrameQuadrupole_YY*gqxz14+atomJ.labFrameQuadrupole_ZZ*gqxz16 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxz12+atomJ.labFrameQuadrupole_XZ*gqxz13+atomJ.labFrameQuadrupole_YZ*gqxz15)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqyz11+atomJ.labFrameQuadrupole_YY*gqyz14+atomJ.labFrameQuadrupole_ZZ*gqyz16 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyz12+atomJ.labFrameQuadrupole_XZ*gqyz13+atomJ.labFrameQuadrupole_YZ*gqyz15))); dewkdx = atomI.q*(atomJ.labFrameDipole[0]*gux2+atomJ.labFrameDipole[1]*guy2+atomJ.labFrameDipole[2]*guz2) -atomJ.q*(atomI.labFrameDipole[0]*gc5+atomI.labFrameDipole[1]*gc6+atomI.labFrameDipole[2]*gc7) +atomI.q*(atomJ.labFrameQuadrupole_XX*gqxx2+atomJ.labFrameQuadrupole_YY*gqyy2+atomJ.labFrameQuadrupole_ZZ*gqzz2 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy2+atomJ.labFrameQuadrupole_XZ*gqxz2+atomJ.labFrameQuadrupole_YZ*gqyz2)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gc11+atomI.labFrameQuadrupole_YY*gc14+atomI.labFrameQuadrupole_ZZ*gc16 +2.0f*(atomI.labFrameQuadrupole_XY*gc12+atomI.labFrameQuadrupole_XZ*gc13+atomI.labFrameQuadrupole_YZ*gc15)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gqxx5+atomJ.labFrameQuadrupole_YY*gqyy5+atomJ.labFrameQuadrupole_ZZ*gqzz5 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy5+atomJ.labFrameQuadrupole_XZ*gqxz5+atomJ.labFrameQuadrupole_YZ*gqyz5)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*gqxx6+atomJ.labFrameQuadrupole_YY*gqyy6+atomJ.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy6+atomJ.labFrameQuadrupole_XZ*gqxz6+atomJ.labFrameQuadrupole_YZ*gqyz6)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*gqxx7+atomJ.labFrameQuadrupole_YY*gqyy7+atomJ.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy7+atomJ.labFrameQuadrupole_XZ*gqxz7+atomJ.labFrameQuadrupole_YZ*gqyz7)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gux11+atomI.labFrameQuadrupole_YY*gux14+atomI.labFrameQuadrupole_ZZ*gux16 +2.0f*(atomI.labFrameQuadrupole_XY*gux12+atomI.labFrameQuadrupole_XZ*gux13+atomI.labFrameQuadrupole_YZ*gux15)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*guy11+atomI.labFrameQuadrupole_YY*guy14+atomI.labFrameQuadrupole_ZZ*guy16 +2.0f*(atomI.labFrameQuadrupole_XY*guy12+atomI.labFrameQuadrupole_XZ*guy13+atomI.labFrameQuadrupole_YZ*guy15)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*guz11+atomI.labFrameQuadrupole_YY*guz14+atomI.labFrameQuadrupole_ZZ*guz16 +2.0f*(atomI.labFrameQuadrupole_XY*guz12+atomI.labFrameQuadrupole_XZ*guz13+atomI.labFrameQuadrupole_YZ*guz15)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx11+atomJ.labFrameQuadrupole_YY*gqyy11+atomJ.labFrameQuadrupole_ZZ*gqzz11 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy11+atomJ.labFrameQuadrupole_XZ*gqxz11+atomJ.labFrameQuadrupole_YZ*gqyz11)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqxx14+atomJ.labFrameQuadrupole_YY*gqyy14+atomJ.labFrameQuadrupole_ZZ*gqzz14 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy14+atomJ.labFrameQuadrupole_XZ*gqxz14+atomJ.labFrameQuadrupole_YZ*gqyz14)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqxx16+atomJ.labFrameQuadrupole_YY*gqyy16+atomJ.labFrameQuadrupole_ZZ*gqzz16 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy16+atomJ.labFrameQuadrupole_XZ*gqxz16+atomJ.labFrameQuadrupole_YZ*gqyz16)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxx12+atomJ.labFrameQuadrupole_YY*gqyy12+atomJ.labFrameQuadrupole_ZZ*gqzz12 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy12+atomJ.labFrameQuadrupole_XZ*gqxz12+atomJ.labFrameQuadrupole_YZ*gqyz12)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxx13+atomJ.labFrameQuadrupole_YY*gqyy13+atomJ.labFrameQuadrupole_ZZ*gqzz13 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy13+atomJ.labFrameQuadrupole_XZ*gqxz13+atomJ.labFrameQuadrupole_YZ*gqyz13)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqxx15+atomJ.labFrameQuadrupole_YY*gqyy15+atomJ.labFrameQuadrupole_ZZ*gqzz15 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy15+atomJ.labFrameQuadrupole_XZ*gqxz15+atomJ.labFrameQuadrupole_YZ*gqyz15))); dedx = desymdx + 0.5f*(dewidx + dewkdx); desymdy = atomI.q * atomJ.q * gc3 - (atomI.labFrameDipole[0]*(atomJ.labFrameDipole[0]*gux6+atomJ.labFrameDipole[1]*guy6+atomJ.labFrameDipole[2]*guz6) +atomI.labFrameDipole[1]*(atomJ.labFrameDipole[0]*gux8+atomJ.labFrameDipole[1]*guy8+atomJ.labFrameDipole[2]*guz8) +atomI.labFrameDipole[2]*(atomJ.labFrameDipole[0]*gux9+atomJ.labFrameDipole[1]*guy9+atomJ.labFrameDipole[2]*guz9)); dewidy = atomI.q*(atomJ.labFrameDipole[0]*gc6+atomJ.labFrameDipole[1]*gc8+atomJ.labFrameDipole[2]*gc9) -atomJ.q*(atomI.labFrameDipole[0]*gux3+atomI.labFrameDipole[1]*guy3+atomI.labFrameDipole[2]*guz3) +atomI.q*(atomJ.labFrameQuadrupole_XX*gc12+atomJ.labFrameQuadrupole_YY*gc17+atomJ.labFrameQuadrupole_ZZ*gc19 +2.0f*(atomJ.labFrameQuadrupole_XY*gc14+atomJ.labFrameQuadrupole_XZ*gc15+atomJ.labFrameQuadrupole_YZ*gc18)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gqxx3+atomI.labFrameQuadrupole_YY*gqyy3+atomI.labFrameQuadrupole_ZZ*gqzz3 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy3+atomI.labFrameQuadrupole_XZ*gqxz3+atomI.labFrameQuadrupole_YZ*gqyz3)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gux12+atomJ.labFrameQuadrupole_YY*gux17+atomJ.labFrameQuadrupole_ZZ*gux19 +2.0f*(atomJ.labFrameQuadrupole_XY*gux14+atomJ.labFrameQuadrupole_XZ*gux15+atomJ.labFrameQuadrupole_YZ*gux18)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*guy12+atomJ.labFrameQuadrupole_YY*guy17+atomJ.labFrameQuadrupole_ZZ*guy19 +2.0f*(atomJ.labFrameQuadrupole_XY*guy14+atomJ.labFrameQuadrupole_XZ*guy15+atomJ.labFrameQuadrupole_YZ*guy18)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*guz12+atomJ.labFrameQuadrupole_YY*guz17+atomJ.labFrameQuadrupole_ZZ*guz19 +2.0f*(atomJ.labFrameQuadrupole_XY*guz14+atomJ.labFrameQuadrupole_XZ*guz15+atomJ.labFrameQuadrupole_YZ*guz18)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gqxx6+atomI.labFrameQuadrupole_YY*gqyy6+atomI.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy6+atomI.labFrameQuadrupole_XZ*gqxz6+atomI.labFrameQuadrupole_YZ*gqyz6)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*gqxx8+atomI.labFrameQuadrupole_YY*gqyy8+atomI.labFrameQuadrupole_ZZ*gqzz8 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy8+atomI.labFrameQuadrupole_XZ*gqxz8+atomI.labFrameQuadrupole_YZ*gqyz8)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*gqxx9+atomI.labFrameQuadrupole_YY*gqyy9+atomI.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy9+atomI.labFrameQuadrupole_XZ*gqxz9+atomI.labFrameQuadrupole_YZ*gqyz9)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx12+atomJ.labFrameQuadrupole_YY*gqxx17+atomJ.labFrameQuadrupole_ZZ*gqxx19 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxx14+atomJ.labFrameQuadrupole_XZ*gqxx15+atomJ.labFrameQuadrupole_YZ*gqxx18)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqyy12+atomJ.labFrameQuadrupole_YY*gqyy17+atomJ.labFrameQuadrupole_ZZ*gqyy19 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyy14+atomJ.labFrameQuadrupole_XZ*gqyy15+atomJ.labFrameQuadrupole_YZ*gqyy18)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqzz12+atomJ.labFrameQuadrupole_YY*gqzz17+atomJ.labFrameQuadrupole_ZZ*gqzz19 +2.0f*(atomJ.labFrameQuadrupole_XY*gqzz14+atomJ.labFrameQuadrupole_XZ*gqzz15+atomJ.labFrameQuadrupole_YZ*gqzz18)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxy12+atomJ.labFrameQuadrupole_YY*gqxy17+atomJ.labFrameQuadrupole_ZZ*gqxy19 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy14+atomJ.labFrameQuadrupole_XZ*gqxy15+atomJ.labFrameQuadrupole_YZ*gqxy18)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxz12+atomJ.labFrameQuadrupole_YY*gqxz17+atomJ.labFrameQuadrupole_ZZ*gqxz19 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxz14+atomJ.labFrameQuadrupole_XZ*gqxz15+atomJ.labFrameQuadrupole_YZ*gqxz18)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqyz12+atomJ.labFrameQuadrupole_YY*gqyz17+atomJ.labFrameQuadrupole_ZZ*gqyz19 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyz14+atomJ.labFrameQuadrupole_XZ*gqyz15+atomJ.labFrameQuadrupole_YZ*gqyz18))); dewkdy = atomI.q*(atomJ.labFrameDipole[0]*gux3+atomJ.labFrameDipole[1]*guy3+atomJ.labFrameDipole[2]*guz3) -atomJ.q*(atomI.labFrameDipole[0]*gc6+atomI.labFrameDipole[1]*gc8+atomI.labFrameDipole[2]*gc9) +atomI.q*(atomJ.labFrameQuadrupole_XX*gqxx3+atomJ.labFrameQuadrupole_YY*gqyy3+atomJ.labFrameQuadrupole_ZZ*gqzz3 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy3+atomJ.labFrameQuadrupole_XZ*gqxz3+atomJ.labFrameQuadrupole_YZ*gqyz3)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gc12+atomI.labFrameQuadrupole_YY*gc17+atomI.labFrameQuadrupole_ZZ*gc19 +2.0f*(atomI.labFrameQuadrupole_XY*gc14+atomI.labFrameQuadrupole_XZ*gc15+atomI.labFrameQuadrupole_YZ*gc18)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gqxx6+atomJ.labFrameQuadrupole_YY*gqyy6+atomJ.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy6+atomJ.labFrameQuadrupole_XZ*gqxz6+atomJ.labFrameQuadrupole_YZ*gqyz6)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*gqxx8+atomJ.labFrameQuadrupole_YY*gqyy8+atomJ.labFrameQuadrupole_ZZ*gqzz8 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy8+atomJ.labFrameQuadrupole_XZ*gqxz8+atomJ.labFrameQuadrupole_YZ*gqyz8)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*gqxx9+atomJ.labFrameQuadrupole_YY*gqyy9+atomJ.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy9+atomJ.labFrameQuadrupole_XZ*gqxz9+atomJ.labFrameQuadrupole_YZ*gqyz9)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gux12+atomI.labFrameQuadrupole_YY*gux17+atomI.labFrameQuadrupole_ZZ*gux19 +2.0f*(atomI.labFrameQuadrupole_XY*gux14+atomI.labFrameQuadrupole_XZ*gux15+atomI.labFrameQuadrupole_YZ*gux18)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*guy12+atomI.labFrameQuadrupole_YY*guy17+atomI.labFrameQuadrupole_ZZ*guy19 +2.0f*(atomI.labFrameQuadrupole_XY*guy14+atomI.labFrameQuadrupole_XZ*guy15+atomI.labFrameQuadrupole_YZ*guy18)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*guz12+atomI.labFrameQuadrupole_YY*guz17+atomI.labFrameQuadrupole_ZZ*guz19 +2.0f*(atomI.labFrameQuadrupole_XY*guz14+atomI.labFrameQuadrupole_XZ*guz15+atomI.labFrameQuadrupole_YZ*guz18)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx12+atomJ.labFrameQuadrupole_YY*gqyy12+atomJ.labFrameQuadrupole_ZZ*gqzz12 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy12+atomJ.labFrameQuadrupole_XZ*gqxz12+atomJ.labFrameQuadrupole_YZ*gqyz12)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqxx17+atomJ.labFrameQuadrupole_YY*gqyy17+atomJ.labFrameQuadrupole_ZZ*gqzz17 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy17+atomJ.labFrameQuadrupole_XZ*gqxz17+atomJ.labFrameQuadrupole_YZ*gqyz17)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqxx19+atomJ.labFrameQuadrupole_YY*gqyy19+atomJ.labFrameQuadrupole_ZZ*gqzz19 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy19+atomJ.labFrameQuadrupole_XZ*gqxz19+atomJ.labFrameQuadrupole_YZ*gqyz19)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxx14+atomJ.labFrameQuadrupole_YY*gqyy14+atomJ.labFrameQuadrupole_ZZ*gqzz14 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy14+atomJ.labFrameQuadrupole_XZ*gqxz14+atomJ.labFrameQuadrupole_YZ*gqyz14)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxx15+atomJ.labFrameQuadrupole_YY*gqyy15+atomJ.labFrameQuadrupole_ZZ*gqzz15 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy15+atomJ.labFrameQuadrupole_XZ*gqxz15+atomJ.labFrameQuadrupole_YZ*gqyz15)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqxx18+atomJ.labFrameQuadrupole_YY*gqyy18+atomJ.labFrameQuadrupole_ZZ*gqzz18 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy18+atomJ.labFrameQuadrupole_XZ*gqxz18+atomJ.labFrameQuadrupole_YZ*gqyz18))); dedy = desymdy + 0.5f*(dewidy + dewkdy); desymdz = atomI.q * atomJ.q * gc4 - (atomI.labFrameDipole[0]*(atomJ.labFrameDipole[0]*gux7+atomJ.labFrameDipole[1]*guy7+atomJ.labFrameDipole[2]*guz7) +atomI.labFrameDipole[1]*(atomJ.labFrameDipole[0]*gux9+atomJ.labFrameDipole[1]*guy9+atomJ.labFrameDipole[2]*guz9) +atomI.labFrameDipole[2]*(atomJ.labFrameDipole[0]*gux10+atomJ.labFrameDipole[1]*guy10+atomJ.labFrameDipole[2]*guz10)); dewidz = atomI.q*(atomJ.labFrameDipole[0]*gc7+atomJ.labFrameDipole[1]*gc9+atomJ.labFrameDipole[2]*gc10) -atomJ.q*(atomI.labFrameDipole[0]*gux4+atomI.labFrameDipole[1]*guy4+atomI.labFrameDipole[2]*guz4) +atomI.q*(atomJ.labFrameQuadrupole_XX*gc13+atomJ.labFrameQuadrupole_YY*gc18+atomJ.labFrameQuadrupole_ZZ*gc20 +2.0f*(atomJ.labFrameQuadrupole_XY*gc15+atomJ.labFrameQuadrupole_XZ*gc16+atomJ.labFrameQuadrupole_YZ*gc19)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gqxx4+atomI.labFrameQuadrupole_YY*gqyy4+atomI.labFrameQuadrupole_ZZ*gqzz4 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy4+atomI.labFrameQuadrupole_XZ*gqxz4+atomI.labFrameQuadrupole_YZ*gqyz4)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gux13+atomJ.labFrameQuadrupole_YY*gux18+atomJ.labFrameQuadrupole_ZZ*gux20 +2.0f*(atomJ.labFrameQuadrupole_XY*gux15+atomJ.labFrameQuadrupole_XZ*gux16+atomJ.labFrameQuadrupole_YZ*gux19)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*guy13+atomJ.labFrameQuadrupole_YY*guy18+atomJ.labFrameQuadrupole_ZZ*guy20 +2.0f*(atomJ.labFrameQuadrupole_XY*guy15+atomJ.labFrameQuadrupole_XZ*guy16+atomJ.labFrameQuadrupole_YZ*guy19)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*guz13+atomJ.labFrameQuadrupole_YY*guz18+atomJ.labFrameQuadrupole_ZZ*guz20 +2.0f*(atomJ.labFrameQuadrupole_XY*guz15+atomJ.labFrameQuadrupole_XZ*guz16+atomJ.labFrameQuadrupole_YZ*guz19)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gqxx7+atomI.labFrameQuadrupole_YY*gqyy7+atomI.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy7+atomI.labFrameQuadrupole_XZ*gqxz7+atomI.labFrameQuadrupole_YZ*gqyz7)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*gqxx9+atomI.labFrameQuadrupole_YY*gqyy9+atomI.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy9+atomI.labFrameQuadrupole_XZ*gqxz9+atomI.labFrameQuadrupole_YZ*gqyz9)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*gqxx10+atomI.labFrameQuadrupole_YY*gqyy10+atomI.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy10+atomI.labFrameQuadrupole_XZ*gqxz10+atomI.labFrameQuadrupole_YZ*gqyz10)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx13+atomJ.labFrameQuadrupole_YY*gqxx18+atomJ.labFrameQuadrupole_ZZ*gqxx20 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxx15+atomJ.labFrameQuadrupole_XZ*gqxx16+atomJ.labFrameQuadrupole_YZ*gqxx19)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqyy13+atomJ.labFrameQuadrupole_YY*gqyy18+atomJ.labFrameQuadrupole_ZZ*gqyy20 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyy15+atomJ.labFrameQuadrupole_XZ*gqyy16+atomJ.labFrameQuadrupole_YZ*gqyy19)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqzz13+atomJ.labFrameQuadrupole_YY*gqzz18+atomJ.labFrameQuadrupole_ZZ*gqzz20 +2.0f*(atomJ.labFrameQuadrupole_XY*gqzz15+atomJ.labFrameQuadrupole_XZ*gqzz16+atomJ.labFrameQuadrupole_YZ*gqzz19)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxy13+atomJ.labFrameQuadrupole_YY*gqxy18+atomJ.labFrameQuadrupole_ZZ*gqxy20 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy15+atomJ.labFrameQuadrupole_XZ*gqxy16+atomJ.labFrameQuadrupole_YZ*gqxy19)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxz13+atomJ.labFrameQuadrupole_YY*gqxz18+atomJ.labFrameQuadrupole_ZZ*gqxz20 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxz15+atomJ.labFrameQuadrupole_XZ*gqxz16+atomJ.labFrameQuadrupole_YZ*gqxz19)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqyz13+atomJ.labFrameQuadrupole_YY*gqyz18+atomJ.labFrameQuadrupole_ZZ*gqyz20 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyz15+atomJ.labFrameQuadrupole_XZ*gqyz16+atomJ.labFrameQuadrupole_YZ*gqyz19))); dewkdz = atomI.q*(atomJ.labFrameDipole[0]*gux4+atomJ.labFrameDipole[1]*guy4+atomJ.labFrameDipole[2]*guz4) -atomJ.q*(atomI.labFrameDipole[0]*gc7+atomI.labFrameDipole[1]*gc9+atomI.labFrameDipole[2]*gc10) +atomI.q*(atomJ.labFrameQuadrupole_XX*gqxx4+atomJ.labFrameQuadrupole_YY*gqyy4+atomJ.labFrameQuadrupole_ZZ*gqzz4 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy4+atomJ.labFrameQuadrupole_XZ*gqxz4+atomJ.labFrameQuadrupole_YZ*gqyz4)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gc13+atomI.labFrameQuadrupole_YY*gc18+atomI.labFrameQuadrupole_ZZ*gc20 +2.0f*(atomI.labFrameQuadrupole_XY*gc15+atomI.labFrameQuadrupole_XZ*gc16+atomI.labFrameQuadrupole_YZ*gc19)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gqxx7+atomJ.labFrameQuadrupole_YY*gqyy7+atomJ.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy7+atomJ.labFrameQuadrupole_XZ*gqxz7+atomJ.labFrameQuadrupole_YZ*gqyz7)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*gqxx9+atomJ.labFrameQuadrupole_YY*gqyy9+atomJ.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy9+atomJ.labFrameQuadrupole_XZ*gqxz9+atomJ.labFrameQuadrupole_YZ*gqyz9)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*gqxx10+atomJ.labFrameQuadrupole_YY*gqyy10+atomJ.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy10+atomJ.labFrameQuadrupole_XZ*gqxz10+atomJ.labFrameQuadrupole_YZ*gqyz10)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gux13+atomI.labFrameQuadrupole_YY*gux18+atomI.labFrameQuadrupole_ZZ*gux20 +2.0f*(atomI.labFrameQuadrupole_XY*gux15+atomI.labFrameQuadrupole_XZ*gux16+atomI.labFrameQuadrupole_YZ*gux19)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*guy13+atomI.labFrameQuadrupole_YY*guy18+atomI.labFrameQuadrupole_ZZ*guy20 +2.0f*(atomI.labFrameQuadrupole_XY*guy15+atomI.labFrameQuadrupole_XZ*guy16+atomI.labFrameQuadrupole_YZ*guy19)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*guz13+atomI.labFrameQuadrupole_YY*guz18+atomI.labFrameQuadrupole_ZZ*guz20 +2.0f*(atomI.labFrameQuadrupole_XY*guz15+atomI.labFrameQuadrupole_XZ*guz16+atomI.labFrameQuadrupole_YZ*guz19)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx13+atomJ.labFrameQuadrupole_YY*gqyy13+atomJ.labFrameQuadrupole_ZZ*gqzz13 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy13+atomJ.labFrameQuadrupole_XZ*gqxz13+atomJ.labFrameQuadrupole_YZ*gqyz13)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqxx18+atomJ.labFrameQuadrupole_YY*gqyy18+atomJ.labFrameQuadrupole_ZZ*gqzz18 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy18+atomJ.labFrameQuadrupole_XZ*gqxz18+atomJ.labFrameQuadrupole_YZ*gqyz18)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqxx20+atomJ.labFrameQuadrupole_YY*gqyy20+atomJ.labFrameQuadrupole_ZZ*gqzz20 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy20+atomJ.labFrameQuadrupole_XZ*gqxz20+atomJ.labFrameQuadrupole_YZ*gqyz20)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxx15+atomJ.labFrameQuadrupole_YY*gqyy15+atomJ.labFrameQuadrupole_ZZ*gqzz15 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy15+atomJ.labFrameQuadrupole_XZ*gqxz15+atomJ.labFrameQuadrupole_YZ*gqyz15)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxx16+atomJ.labFrameQuadrupole_YY*gqyy16+atomJ.labFrameQuadrupole_ZZ*gqzz16 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy16+atomJ.labFrameQuadrupole_XZ*gqxz16+atomJ.labFrameQuadrupole_YZ*gqyz16)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqxx19+atomJ.labFrameQuadrupole_YY*gqyy19+atomJ.labFrameQuadrupole_ZZ*gqzz19 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy19+atomJ.labFrameQuadrupole_XZ*gqxz19+atomJ.labFrameQuadrupole_YZ*gqyz19))); dedz = desymdz + 0.5f*(dewidz + dewkdz); desymdr = atomI.q * atomJ.q * gc21 - (atomI.labFrameDipole[0]*(atomJ.labFrameDipole[0]*gux22+atomJ.labFrameDipole[1]*guy22+atomJ.labFrameDipole[2]*guz22) +atomI.labFrameDipole[1]*(atomJ.labFrameDipole[0]*gux23+atomJ.labFrameDipole[1]*guy23+atomJ.labFrameDipole[2]*guz23) +atomI.labFrameDipole[2]*(atomJ.labFrameDipole[0]*gux24+atomJ.labFrameDipole[1]*guy24+atomJ.labFrameDipole[2]*guz24)); dewidr = atomI.q*(atomJ.labFrameDipole[0]*gc22+atomJ.labFrameDipole[1]*gc23+atomJ.labFrameDipole[2]*gc24) -atomJ.q*(atomI.labFrameDipole[0]*gux21+atomI.labFrameDipole[1]*guy21+atomI.labFrameDipole[2]*guz21) +atomI.q*(atomJ.labFrameQuadrupole_XX*gc25+atomJ.labFrameQuadrupole_YY*gc28+atomJ.labFrameQuadrupole_ZZ*gc30 +2.0f*(atomJ.labFrameQuadrupole_XY*gc26+atomJ.labFrameQuadrupole_XZ*gc27+atomJ.labFrameQuadrupole_YZ*gc29)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gqxx21+atomI.labFrameQuadrupole_YY*gqyy21+atomI.labFrameQuadrupole_ZZ*gqzz21 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy21+atomI.labFrameQuadrupole_XZ*gqxz21+atomI.labFrameQuadrupole_YZ*gqyz21)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gux25+atomJ.labFrameQuadrupole_YY*gux28+atomJ.labFrameQuadrupole_ZZ*gux30 +2.0f*(atomJ.labFrameQuadrupole_XY*gux26+atomJ.labFrameQuadrupole_XZ*gux27+atomJ.labFrameQuadrupole_YZ*gux29)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*guy25+atomJ.labFrameQuadrupole_YY*guy28+atomJ.labFrameQuadrupole_ZZ*guy30 +2.0f*(atomJ.labFrameQuadrupole_XY*guy26+atomJ.labFrameQuadrupole_XZ*guy27+atomJ.labFrameQuadrupole_YZ*guy29)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*guz25+atomJ.labFrameQuadrupole_YY*guz28+atomJ.labFrameQuadrupole_ZZ*guz30 +2.0f*(atomJ.labFrameQuadrupole_XY*guz26+atomJ.labFrameQuadrupole_XZ*guz27+atomJ.labFrameQuadrupole_YZ*guz29)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gqxx22+atomI.labFrameQuadrupole_YY*gqyy22+atomI.labFrameQuadrupole_ZZ*gqzz22 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy22+atomI.labFrameQuadrupole_XZ*gqxz22+atomI.labFrameQuadrupole_YZ*gqyz22)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*gqxx23+atomI.labFrameQuadrupole_YY*gqyy23+atomI.labFrameQuadrupole_ZZ*gqzz23 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy23+atomI.labFrameQuadrupole_XZ*gqxz23+atomI.labFrameQuadrupole_YZ*gqyz23)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*gqxx24+atomI.labFrameQuadrupole_YY*gqyy24+atomI.labFrameQuadrupole_ZZ*gqzz24 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy24+atomI.labFrameQuadrupole_XZ*gqxz24+atomI.labFrameQuadrupole_YZ*gqyz24)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx25+atomJ.labFrameQuadrupole_YY*gqxx28+atomJ.labFrameQuadrupole_ZZ*gqxx30 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxx26+atomJ.labFrameQuadrupole_XZ*gqxx27+atomJ.labFrameQuadrupole_YZ*gqxx29)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqyy25+atomJ.labFrameQuadrupole_YY*gqyy28+atomJ.labFrameQuadrupole_ZZ*gqyy30 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyy26+atomJ.labFrameQuadrupole_XZ*gqyy27+atomJ.labFrameQuadrupole_YZ*gqyy29)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqzz25+atomJ.labFrameQuadrupole_YY*gqzz28+atomJ.labFrameQuadrupole_ZZ*gqzz30 +2.0f*(atomJ.labFrameQuadrupole_XY*gqzz26+atomJ.labFrameQuadrupole_XZ*gqzz27+atomJ.labFrameQuadrupole_YZ*gqzz29)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxy25+atomJ.labFrameQuadrupole_YY*gqxy28+atomJ.labFrameQuadrupole_ZZ*gqxy30 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy26+atomJ.labFrameQuadrupole_XZ*gqxy27+atomJ.labFrameQuadrupole_YZ*gqxy29)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxz25+atomJ.labFrameQuadrupole_YY*gqxz28+atomJ.labFrameQuadrupole_ZZ*gqxz30 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxz26+atomJ.labFrameQuadrupole_XZ*gqxz27+atomJ.labFrameQuadrupole_YZ*gqxz29)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqyz25+atomJ.labFrameQuadrupole_YY*gqyz28+atomJ.labFrameQuadrupole_ZZ*gqyz30 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyz26+atomJ.labFrameQuadrupole_XZ*gqyz27+atomJ.labFrameQuadrupole_YZ*gqyz29))); dewkdr = atomI.q*(atomJ.labFrameDipole[0]*gux21+atomJ.labFrameDipole[1]*guy21+atomJ.labFrameDipole[2]*guz21) -atomJ.q*(atomI.labFrameDipole[0]*gc22+atomI.labFrameDipole[1]*gc23+atomI.labFrameDipole[2]*gc24) +atomI.q*(atomJ.labFrameQuadrupole_XX*gqxx21+atomJ.labFrameQuadrupole_YY*gqyy21+atomJ.labFrameQuadrupole_ZZ*gqzz21 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy21+atomJ.labFrameQuadrupole_XZ*gqxz21+atomJ.labFrameQuadrupole_YZ*gqyz21)) +atomJ.q*(atomI.labFrameQuadrupole_XX*gc25+atomI.labFrameQuadrupole_YY*gc28+atomI.labFrameQuadrupole_ZZ*gc30 +2.0f*(atomI.labFrameQuadrupole_XY*gc26+atomI.labFrameQuadrupole_XZ*gc27+atomI.labFrameQuadrupole_YZ*gc29)) - atomI.labFrameDipole[0]*(atomJ.labFrameQuadrupole_XX*gqxx22+atomJ.labFrameQuadrupole_YY*gqyy22+atomJ.labFrameQuadrupole_ZZ*gqzz22 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy22+atomJ.labFrameQuadrupole_XZ*gqxz22+atomJ.labFrameQuadrupole_YZ*gqyz22)) - atomI.labFrameDipole[1]*(atomJ.labFrameQuadrupole_XX*gqxx23+atomJ.labFrameQuadrupole_YY*gqyy23+atomJ.labFrameQuadrupole_ZZ*gqzz23 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy23+atomJ.labFrameQuadrupole_XZ*gqxz23+atomJ.labFrameQuadrupole_YZ*gqyz23)) - atomI.labFrameDipole[2]*(atomJ.labFrameQuadrupole_XX*gqxx24+atomJ.labFrameQuadrupole_YY*gqyy24+atomJ.labFrameQuadrupole_ZZ*gqzz24 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy24+atomJ.labFrameQuadrupole_XZ*gqxz24+atomJ.labFrameQuadrupole_YZ*gqyz24)) + atomJ.labFrameDipole[0]*(atomI.labFrameQuadrupole_XX*gux25+atomI.labFrameQuadrupole_YY*gux28+atomI.labFrameQuadrupole_ZZ*gux30 +2.0f*(atomI.labFrameQuadrupole_XY*gux26+atomI.labFrameQuadrupole_XZ*gux27+atomI.labFrameQuadrupole_YZ*gux29)) + atomJ.labFrameDipole[1]*(atomI.labFrameQuadrupole_XX*guy25+atomI.labFrameQuadrupole_YY*guy28+atomI.labFrameQuadrupole_ZZ*guy30 +2.0f*(atomI.labFrameQuadrupole_XY*guy26+atomI.labFrameQuadrupole_XZ*guy27+atomI.labFrameQuadrupole_YZ*guy29)) + atomJ.labFrameDipole[2]*(atomI.labFrameQuadrupole_XX*guz25+atomI.labFrameQuadrupole_YY*guz28+atomI.labFrameQuadrupole_ZZ*guz30 +2.0f*(atomI.labFrameQuadrupole_XY*guz26+atomI.labFrameQuadrupole_XZ*guz27+atomI.labFrameQuadrupole_YZ*guz29)) + atomI.labFrameQuadrupole_XX*(atomJ.labFrameQuadrupole_XX*gqxx25+atomJ.labFrameQuadrupole_YY*gqyy25+atomJ.labFrameQuadrupole_ZZ*gqzz25 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy25+atomJ.labFrameQuadrupole_XZ*gqxz25+atomJ.labFrameQuadrupole_YZ*gqyz25)) + atomI.labFrameQuadrupole_YY*(atomJ.labFrameQuadrupole_XX*gqxx28+atomJ.labFrameQuadrupole_YY*gqyy28+atomJ.labFrameQuadrupole_ZZ*gqzz28 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy28+atomJ.labFrameQuadrupole_XZ*gqxz28+atomJ.labFrameQuadrupole_YZ*gqyz28)) + atomI.labFrameQuadrupole_ZZ*(atomJ.labFrameQuadrupole_XX*gqxx30+atomJ.labFrameQuadrupole_YY*gqyy30+atomJ.labFrameQuadrupole_ZZ*gqzz30 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy30+atomJ.labFrameQuadrupole_XZ*gqxz30+atomJ.labFrameQuadrupole_YZ*gqyz30)) + 2.0f*(atomI.labFrameQuadrupole_XY*(atomJ.labFrameQuadrupole_XX*gqxx26+atomJ.labFrameQuadrupole_YY*gqyy26+atomJ.labFrameQuadrupole_ZZ*gqzz26 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy26+atomJ.labFrameQuadrupole_XZ*gqxz26+atomJ.labFrameQuadrupole_YZ*gqyz26)) + atomI.labFrameQuadrupole_XZ*(atomJ.labFrameQuadrupole_XX*gqxx27+atomJ.labFrameQuadrupole_YY*gqyy27+atomJ.labFrameQuadrupole_ZZ*gqzz27 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy27+atomJ.labFrameQuadrupole_XZ*gqxz27+atomJ.labFrameQuadrupole_YZ*gqyz27)) + atomI.labFrameQuadrupole_YZ*(atomJ.labFrameQuadrupole_XX*gqxx29+atomJ.labFrameQuadrupole_YY*gqyy29+atomJ.labFrameQuadrupole_ZZ*gqzz29 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy29+atomJ.labFrameQuadrupole_XZ*gqxz29+atomJ.labFrameQuadrupole_YZ*gqyz29))); dsumdr = desymdr + 0.5f*(dewidr + dewkdr); drbi = atomJ.bornRadius*dsumdr; drbk = atomI.bornRadius*dsumdr; // torque on permanent dipoles due to permanent reaction field float trq1 = 0.0f; float trq2 = 0.0f; float trq3 = 0.0f; float trq_k1 = 0.0f; float trq_k2 = 0.0f; float trq_k3 = 0.0f; if ( xr != 0.0f || yr != 0.0f || zr != 0.0f ) { float fid1 = atomJ.labFrameDipole[0]*gux2 + atomJ.labFrameDipole[1]*gux3 + atomJ.labFrameDipole[2]*gux4 + 0.5f*(atomJ.q*gux1+atomJ.labFrameQuadrupole_XX*gux5+atomJ.labFrameQuadrupole_YY*gux8+atomJ.labFrameQuadrupole_ZZ*gux10 +2.0f*(atomJ.labFrameQuadrupole_XY*gux6+atomJ.labFrameQuadrupole_XZ*gux7+atomJ.labFrameQuadrupole_YZ*gux9) +atomJ.q*gc2+atomJ.labFrameQuadrupole_XX*gqxx2+atomJ.labFrameQuadrupole_YY*gqyy2+atomJ.labFrameQuadrupole_ZZ*gqzz2 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy2+atomJ.labFrameQuadrupole_XZ*gqxz2+atomJ.labFrameQuadrupole_YZ*gqyz2)); float fid2 = atomJ.labFrameDipole[0]*guy2 + atomJ.labFrameDipole[1]*guy3 + atomJ.labFrameDipole[2]*guy4 + 0.5f*(atomJ.q*guy1+atomJ.labFrameQuadrupole_XX*guy5+atomJ.labFrameQuadrupole_YY*guy8+atomJ.labFrameQuadrupole_ZZ*guy10 +2.0f*(atomJ.labFrameQuadrupole_XY*guy6+atomJ.labFrameQuadrupole_XZ*guy7+atomJ.labFrameQuadrupole_YZ*guy9) +atomJ.q*gc3+atomJ.labFrameQuadrupole_XX*gqxx3+atomJ.labFrameQuadrupole_YY*gqyy3+atomJ.labFrameQuadrupole_ZZ*gqzz3 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy3+atomJ.labFrameQuadrupole_XZ*gqxz3+atomJ.labFrameQuadrupole_YZ*gqyz3)); float fid3 = atomJ.labFrameDipole[0]*guz2 + atomJ.labFrameDipole[1]*guz3 + atomJ.labFrameDipole[2]*guz4 + 0.5f*(atomJ.q*guz1+atomJ.labFrameQuadrupole_XX*guz5+atomJ.labFrameQuadrupole_YY*guz8+atomJ.labFrameQuadrupole_ZZ*guz10 +2.0f*(atomJ.labFrameQuadrupole_XY*guz6+atomJ.labFrameQuadrupole_XZ*guz7+atomJ.labFrameQuadrupole_YZ*guz9) +atomJ.q*gc4+atomJ.labFrameQuadrupole_XX*gqxx4+atomJ.labFrameQuadrupole_YY*gqyy4+atomJ.labFrameQuadrupole_ZZ*gqzz4 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy4+atomJ.labFrameQuadrupole_XZ*gqxz4+atomJ.labFrameQuadrupole_YZ*gqyz4)); float fkd1 = atomI.labFrameDipole[0]*gux2 + atomI.labFrameDipole[1]*gux3 + atomI.labFrameDipole[2]*gux4 - 0.5f*(atomI.q*gux1+atomI.labFrameQuadrupole_XX*gux5+atomI.labFrameQuadrupole_YY*gux8+atomI.labFrameQuadrupole_ZZ*gux10 +2.0f*(atomI.labFrameQuadrupole_XY*gux6+atomI.labFrameQuadrupole_XZ*gux7+atomI.labFrameQuadrupole_YZ*gux9) +atomI.q*gc2+atomI.labFrameQuadrupole_XX*gqxx2+atomI.labFrameQuadrupole_YY*gqyy2+atomI.labFrameQuadrupole_ZZ*gqzz2 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy2+atomI.labFrameQuadrupole_XZ*gqxz2+atomI.labFrameQuadrupole_YZ*gqyz2)); float fkd2 = atomI.labFrameDipole[0]*guy2 + atomI.labFrameDipole[1]*guy3 + atomI.labFrameDipole[2]*guy4 - 0.5f*(atomI.q*guy1+atomI.labFrameQuadrupole_XX*guy5+atomI.labFrameQuadrupole_YY*guy8+atomI.labFrameQuadrupole_ZZ*guy10 +2.0f*(atomI.labFrameQuadrupole_XY*guy6+atomI.labFrameQuadrupole_XZ*guy7+atomI.labFrameQuadrupole_YZ*guy9) +atomI.q*gc3+atomI.labFrameQuadrupole_XX*gqxx3+atomI.labFrameQuadrupole_YY*gqyy3+atomI.labFrameQuadrupole_ZZ*gqzz3 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy3+atomI.labFrameQuadrupole_XZ*gqxz3+atomI.labFrameQuadrupole_YZ*gqyz3)); float fkd3 = atomI.labFrameDipole[0]*guz2 + atomI.labFrameDipole[1]*guz3 + atomI.labFrameDipole[2]*guz4 - 0.5f*(atomI.q*guz1+atomI.labFrameQuadrupole_XX*guz5+atomI.labFrameQuadrupole_YY*guz8+atomI.labFrameQuadrupole_ZZ*guz10 +2.0f*(atomI.labFrameQuadrupole_XY*guz6+atomI.labFrameQuadrupole_XZ*guz7+atomI.labFrameQuadrupole_YZ*guz9) +atomI.q*gc4+atomI.labFrameQuadrupole_XX*gqxx4+atomI.labFrameQuadrupole_YY*gqyy4+atomI.labFrameQuadrupole_ZZ*gqzz4 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy4+atomI.labFrameQuadrupole_XZ*gqxz4+atomI.labFrameQuadrupole_YZ*gqyz4)); trq1 = atomI.labFrameDipole[1]*fid3 - atomI.labFrameDipole[2]*fid2; trq2 = atomI.labFrameDipole[2]*fid1 - atomI.labFrameDipole[0]*fid3; trq3 = atomI.labFrameDipole[0]*fid2 - atomI.labFrameDipole[1]*fid1; trq_k1 = atomJ.labFrameDipole[1]*fkd3 - atomJ.labFrameDipole[2]*fkd2; trq_k2 = atomJ.labFrameDipole[2]*fkd1 - atomJ.labFrameDipole[0]*fkd3; trq_k3 = atomJ.labFrameDipole[0]*fkd2 - atomJ.labFrameDipole[1]*fkd1; // torque on quadrupoles due to permanent reaction field gradient float fidg11 = - 0.5f*(atomJ.q*gqxx1+atomJ.labFrameDipole[0]*gqxx2+atomJ.labFrameDipole[1]*gqxx3+atomJ.labFrameDipole[2]*gqxx4 +atomJ.labFrameQuadrupole_XX*gqxx5+atomJ.labFrameQuadrupole_YY*gqxx8+atomJ.labFrameQuadrupole_ZZ*gqxx10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxx6+atomJ.labFrameQuadrupole_XZ*gqxx7+atomJ.labFrameQuadrupole_YZ*gqxx9) +atomJ.q*gc5+atomJ.labFrameDipole[0]*gux5+atomJ.labFrameDipole[1]*guy5+atomJ.labFrameDipole[2]*guz5 +atomJ.labFrameQuadrupole_XX*gqxx5+atomJ.labFrameQuadrupole_YY*gqyy5+atomJ.labFrameQuadrupole_ZZ*gqzz5 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy5+atomJ.labFrameQuadrupole_XZ*gqxz5+atomJ.labFrameQuadrupole_YZ*gqyz5)); float fidg12 = - 0.5f*(atomJ.q*gqxy1+atomJ.labFrameDipole[0]*gqxy2+atomJ.labFrameDipole[1]*gqxy3+atomJ.labFrameDipole[2]*gqxy4 +atomJ.labFrameQuadrupole_XX*gqxy5+atomJ.labFrameQuadrupole_YY*gqxy8+atomJ.labFrameQuadrupole_ZZ*gqxy10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy6+atomJ.labFrameQuadrupole_XZ*gqxy7+atomJ.labFrameQuadrupole_YZ*gqxy9) +atomJ.q*gc6+atomJ.labFrameDipole[0]*gux6+atomJ.labFrameDipole[1]*guy6+atomJ.labFrameDipole[2]*guz6 +atomJ.labFrameQuadrupole_XX*gqxx6+atomJ.labFrameQuadrupole_YY*gqyy6+atomJ.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy6+atomJ.labFrameQuadrupole_XZ*gqxz6+atomJ.labFrameQuadrupole_YZ*gqyz6)); float fidg13 = - 0.5f*(atomJ.q*gqxz1+atomJ.labFrameDipole[0]*gqxz2+atomJ.labFrameDipole[1]*gqxz3+atomJ.labFrameDipole[2]*gqxz4 +atomJ.labFrameQuadrupole_XX*gqxz5+atomJ.labFrameQuadrupole_YY*gqxz8+atomJ.labFrameQuadrupole_ZZ*gqxz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxz6+atomJ.labFrameQuadrupole_XZ*gqxz7+atomJ.labFrameQuadrupole_YZ*gqxz9) +atomJ.q*gc7+atomJ.labFrameDipole[0]*gux7+atomJ.labFrameDipole[1]*guy7+atomJ.labFrameDipole[2]*guz7 +atomJ.labFrameQuadrupole_XX*gqxx7+atomJ.labFrameQuadrupole_YY*gqyy7+atomJ.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy7+atomJ.labFrameQuadrupole_XZ*gqxz7+atomJ.labFrameQuadrupole_YZ*gqyz7)); float fidg22 = - 0.5f*(atomJ.q*gqyy1+atomJ.labFrameDipole[0]*gqyy2+atomJ.labFrameDipole[1]*gqyy3+atomJ.labFrameDipole[2]*gqyy4 +atomJ.labFrameQuadrupole_XX*gqyy5+atomJ.labFrameQuadrupole_YY*gqyy8+atomJ.labFrameQuadrupole_ZZ*gqyy10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyy6+atomJ.labFrameQuadrupole_XZ*gqyy7+atomJ.labFrameQuadrupole_YZ*gqyy9) +atomJ.q*gc8+atomJ.labFrameDipole[0]*gux8+atomJ.labFrameDipole[1]*guy8+atomJ.labFrameDipole[2]*guz8 +atomJ.labFrameQuadrupole_XX*gqxx8+atomJ.labFrameQuadrupole_YY*gqyy8+atomJ.labFrameQuadrupole_ZZ*gqzz8 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy8+atomJ.labFrameQuadrupole_XZ*gqxz8+atomJ.labFrameQuadrupole_YZ*gqyz8)); float fidg23 = - 0.5f*(atomJ.q*gqyz1+atomJ.labFrameDipole[0]*gqyz2+atomJ.labFrameDipole[1]*gqyz3+atomJ.labFrameDipole[2]*gqyz4 +atomJ.labFrameQuadrupole_XX*gqyz5+atomJ.labFrameQuadrupole_YY*gqyz8+atomJ.labFrameQuadrupole_ZZ*gqyz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqyz6+atomJ.labFrameQuadrupole_XZ*gqyz7+atomJ.labFrameQuadrupole_YZ*gqyz9) +atomJ.q*gc9+atomJ.labFrameDipole[0]*gux9+atomJ.labFrameDipole[1]*guy9+atomJ.labFrameDipole[2]*guz9 +atomJ.labFrameQuadrupole_XX*gqxx9+atomJ.labFrameQuadrupole_YY*gqyy9+atomJ.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy9+atomJ.labFrameQuadrupole_XZ*gqxz9+atomJ.labFrameQuadrupole_YZ*gqyz9)); float fidg33 = - 0.5f*(atomJ.q*gqzz1+atomJ.labFrameDipole[0]*gqzz2+atomJ.labFrameDipole[1]*gqzz3+atomJ.labFrameDipole[2]*gqzz4 +atomJ.labFrameQuadrupole_XX*gqzz5+atomJ.labFrameQuadrupole_YY*gqzz8+atomJ.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqzz6+atomJ.labFrameQuadrupole_XZ*gqzz7+atomJ.labFrameQuadrupole_YZ*gqzz9) +atomJ.q*gc10+atomJ.labFrameDipole[0]*gux10+atomJ.labFrameDipole[1]*guy10+atomJ.labFrameDipole[2]*guz10 +atomJ.labFrameQuadrupole_XX*gqxx10+atomJ.labFrameQuadrupole_YY*gqyy10+atomJ.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy10+atomJ.labFrameQuadrupole_XZ*gqxz10+atomJ.labFrameQuadrupole_YZ*gqyz10)); float fidg21 = fidg12; float fidg31 = fidg13; float fidg32 = fidg23; float fkdg11 = - 0.5f*(atomI.q*gqxx1-atomI.labFrameDipole[0]*gqxx2-atomI.labFrameDipole[1]*gqxx3-atomI.labFrameDipole[2] *gqxx4 +atomI.labFrameQuadrupole_XX*gqxx5+atomI.labFrameQuadrupole_YY*gqxx8+atomI.labFrameQuadrupole_ZZ*gqxx10 +2.0f*(atomI.labFrameQuadrupole_XY*gqxx6+atomI.labFrameQuadrupole_XZ*gqxx7+atomI.labFrameQuadrupole_YZ*gqxx9) +atomI.q*gc5-atomI.labFrameDipole[0]*gux5-atomI.labFrameDipole[1]*guy5-atomI.labFrameDipole[2]*guz5 +atomI.labFrameQuadrupole_XX*gqxx5+atomI.labFrameQuadrupole_YY*gqyy5+atomI.labFrameQuadrupole_ZZ*gqzz5 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy5+atomI.labFrameQuadrupole_XZ*gqxz5+atomI.labFrameQuadrupole_YZ*gqyz5)); float fkdg12 = - 0.5f*(atomI.q*gqxy1-atomI.labFrameDipole[0]*gqxy2-atomI.labFrameDipole[1]*gqxy3-atomI.labFrameDipole[2]*gqxy4 +atomI.labFrameQuadrupole_XX*gqxy5+atomI.labFrameQuadrupole_YY*gqxy8+atomI.labFrameQuadrupole_ZZ*gqxy10 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy6+atomI.labFrameQuadrupole_XZ*gqxy7+atomI.labFrameQuadrupole_YZ*gqxy9) +atomI.q*gc6-atomI.labFrameDipole[0]*gux6-atomI.labFrameDipole[1]*guy6-atomI.labFrameDipole[2]*guz6 +atomI.labFrameQuadrupole_XX*gqxx6+atomI.labFrameQuadrupole_YY*gqyy6+atomI.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy6+atomI.labFrameQuadrupole_XZ*gqxz6+atomI.labFrameQuadrupole_YZ*gqyz6)); float fkdg13 = - 0.5f*(atomI.q*gqxz1-atomI.labFrameDipole[0]*gqxz2-atomI.labFrameDipole[1]*gqxz3-atomI.labFrameDipole[2]*gqxz4 +atomI.labFrameQuadrupole_XX*gqxz5+atomI.labFrameQuadrupole_YY*gqxz8+atomI.labFrameQuadrupole_ZZ*gqxz10 +2.0f*(atomI.labFrameQuadrupole_XY*gqxz6+atomI.labFrameQuadrupole_XZ*gqxz7+atomI.labFrameQuadrupole_YZ*gqxz9) +atomI.q*gc7-atomI.labFrameDipole[0]*gux7-atomI.labFrameDipole[1]*guy7-atomI.labFrameDipole[2]*guz7 +atomI.labFrameQuadrupole_XX*gqxx7+atomI.labFrameQuadrupole_YY*gqyy7+atomI.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy7+atomI.labFrameQuadrupole_XZ*gqxz7+atomI.labFrameQuadrupole_YZ*gqyz7)); float fkdg22 = - 0.5f*(atomI.q*gqyy1-atomI.labFrameDipole[0]*gqyy2-atomI.labFrameDipole[1]*gqyy3-atomI.labFrameDipole[2]*gqyy4 +atomI.labFrameQuadrupole_XX*gqyy5+atomI.labFrameQuadrupole_YY*gqyy8+atomI.labFrameQuadrupole_ZZ*gqyy10 +2.0f*(atomI.labFrameQuadrupole_XY*gqyy6+atomI.labFrameQuadrupole_XZ*gqyy7+atomI.labFrameQuadrupole_YZ*gqyy9) +atomI.q*gc8-atomI.labFrameDipole[0]*gux8-atomI.labFrameDipole[1]*guy8-atomI.labFrameDipole[2]*guz8 +atomI.labFrameQuadrupole_XX*gqxx8+atomI.labFrameQuadrupole_YY*gqyy8+atomI.labFrameQuadrupole_ZZ*gqzz8 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy8+atomI.labFrameQuadrupole_XZ*gqxz8+atomI.labFrameQuadrupole_YZ*gqyz8)); float fkdg23 = - 0.5f*(atomI.q*gqyz1-atomI.labFrameDipole[0]*gqyz2-atomI.labFrameDipole[1]*gqyz3-atomI.labFrameDipole[2]*gqyz4 +atomI.labFrameQuadrupole_XX*gqyz5+atomI.labFrameQuadrupole_YY*gqyz8+atomI.labFrameQuadrupole_ZZ*gqyz10 +2.0f*(atomI.labFrameQuadrupole_XY*gqyz6+atomI.labFrameQuadrupole_XZ*gqyz7+atomI.labFrameQuadrupole_YZ*gqyz9) +atomI.q*gc9-atomI.labFrameDipole[0]*gux9-atomI.labFrameDipole[1]*guy9-atomI.labFrameDipole[2]*guz9 +atomI.labFrameQuadrupole_XX*gqxx9+atomI.labFrameQuadrupole_YY*gqyy9+atomI.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy9+atomI.labFrameQuadrupole_XZ*gqxz9+atomI.labFrameQuadrupole_YZ*gqyz9)); float fkdg33 = - 0.5f*(atomI.q*gqzz1-atomI.labFrameDipole[0]*gqzz2-atomI.labFrameDipole[1]*gqzz3-atomI.labFrameDipole[2]*gqzz4 +atomI.labFrameQuadrupole_XX*gqzz5+atomI.labFrameQuadrupole_YY*gqzz8+atomI.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomI.labFrameQuadrupole_XY*gqzz6+atomI.labFrameQuadrupole_XZ*gqzz7+atomI.labFrameQuadrupole_YZ*gqzz9) +atomI.q*gc10-atomI.labFrameDipole[0]*gux10-atomI.labFrameDipole[1]*guy10-atomI.labFrameDipole[2]*guz10 +atomI.labFrameQuadrupole_XX*gqxx10+atomI.labFrameQuadrupole_YY*gqyy10+atomI.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy10+atomI.labFrameQuadrupole_XZ*gqxz10+atomI.labFrameQuadrupole_YZ*gqyz10)); float fkdg21 = fkdg12; float fkdg31 = fkdg13; float fkdg32 = fkdg23; trq1 += 2.0f* (atomI.labFrameQuadrupole_XY*fidg13+atomI.labFrameQuadrupole_YY*fidg23+atomI.labFrameQuadrupole_YZ*fidg33 -atomI.labFrameQuadrupole_XZ*fidg12-atomI.labFrameQuadrupole_YZ*fidg22-atomI.labFrameQuadrupole_ZZ*fidg32); trq2 += 2.0f*(atomI.labFrameQuadrupole_XZ*fidg11+atomI.labFrameQuadrupole_YZ*fidg21+atomI.labFrameQuadrupole_ZZ*fidg31 -atomI.labFrameQuadrupole_XX*fidg13-atomI.labFrameQuadrupole_XY*fidg23-atomI.labFrameQuadrupole_XZ*fidg33); trq3 += 2.0f*(atomI.labFrameQuadrupole_XX*fidg12+atomI.labFrameQuadrupole_XY*fidg22+atomI.labFrameQuadrupole_XZ*fidg32 -atomI.labFrameQuadrupole_XY*fidg11-atomI.labFrameQuadrupole_YY*fidg21-atomI.labFrameQuadrupole_YZ*fidg31); trq_k1 += 2.0f* (atomJ.labFrameQuadrupole_XY*fkdg13+atomJ.labFrameQuadrupole_YY*fkdg23+atomJ.labFrameQuadrupole_YZ*fkdg33 -atomJ.labFrameQuadrupole_XZ*fkdg12-atomJ.labFrameQuadrupole_YZ*fkdg22-atomJ.labFrameQuadrupole_ZZ*fkdg32); trq_k2 += 2.0f* (atomJ.labFrameQuadrupole_XZ*fkdg11+atomJ.labFrameQuadrupole_YZ*fkdg21+atomJ.labFrameQuadrupole_ZZ*fkdg31 -atomJ.labFrameQuadrupole_XX*fkdg13-atomJ.labFrameQuadrupole_XY*fkdg23-atomJ.labFrameQuadrupole_XZ*fkdg33); trq_k3 += 2.0f* (atomJ.labFrameQuadrupole_XX*fkdg12+atomJ.labFrameQuadrupole_XY*fkdg22+atomJ.labFrameQuadrupole_XZ*fkdg32 -atomJ.labFrameQuadrupole_XY*fkdg11-atomJ.labFrameQuadrupole_YY*fkdg21-atomJ.labFrameQuadrupole_YZ*fkdg31); } // electrostatic solvation energy of the permanent multipoles in // the GK reaction potential of the induced dipoles esymi = -atomI.labFrameDipole[0]*(atomJ.inducedDipole[0]*gux2+atomJ.inducedDipole[1]*guy2+atomJ.inducedDipole[2]*guz2) - atomI.labFrameDipole[1]*(atomJ.inducedDipole[0]*gux3+atomJ.inducedDipole[1]*guy3+atomJ.inducedDipole[2]*guz3) - atomI.labFrameDipole[2]*(atomJ.inducedDipole[0]*gux4+atomJ.inducedDipole[1]*guy4+atomJ.inducedDipole[2]*guz4) - atomJ.labFrameDipole[0]*(atomI.inducedDipole[0]*gux2+atomI.inducedDipole[1]*guy2+atomI.inducedDipole[2]*guz2) - atomJ.labFrameDipole[1]*(atomI.inducedDipole[0]*gux3+atomI.inducedDipole[1]*guy3+atomI.inducedDipole[2]*guz3) - atomJ.labFrameDipole[2]*(atomI.inducedDipole[0]*gux4+atomI.inducedDipole[1]*guy4+atomI.inducedDipole[2]*guz4); ewii = atomI.q*(atomJ.inducedDipole[0]*gc2+atomJ.inducedDipole[1]*gc3+atomJ.inducedDipole[2]*gc4) - atomJ.q*(atomI.inducedDipole[0]*gux1+atomI.inducedDipole[1]*guy1+atomI.inducedDipole[2]*guz1) - atomI.inducedDipole[0]*(atomJ.labFrameQuadrupole_XX*gux5+atomJ.labFrameQuadrupole_YY*gux8+atomJ.labFrameQuadrupole_ZZ*gux10 +2.0f*(atomJ.labFrameQuadrupole_XY*gux6+atomJ.labFrameQuadrupole_XZ*gux7+atomJ.labFrameQuadrupole_YZ*gux9)) - atomI.inducedDipole[1]*(atomJ.labFrameQuadrupole_XX*guy5+atomJ.labFrameQuadrupole_YY*guy8+atomJ.labFrameQuadrupole_ZZ*guy10 +2.0f*(atomJ.labFrameQuadrupole_XY*guy6+atomJ.labFrameQuadrupole_XZ*guy7+atomJ.labFrameQuadrupole_YZ*guy9)) - atomI.inducedDipole[2]*(atomJ.labFrameQuadrupole_XX*guz5+atomJ.labFrameQuadrupole_YY*guz8+atomJ.labFrameQuadrupole_ZZ*guz10 +2.0f*(atomJ.labFrameQuadrupole_XY*guz6+atomJ.labFrameQuadrupole_XZ*guz7+atomJ.labFrameQuadrupole_YZ*guz9)) + atomJ.inducedDipole[0]*(atomI.labFrameQuadrupole_XX*gqxx2+atomI.labFrameQuadrupole_YY*gqyy2+atomI.labFrameQuadrupole_ZZ*gqzz2 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy2+atomI.labFrameQuadrupole_XZ*gqxz2+atomI.labFrameQuadrupole_YZ*gqyz2)) + atomJ.inducedDipole[1]*(atomI.labFrameQuadrupole_XX*gqxx3+atomI.labFrameQuadrupole_YY*gqyy3+atomI.labFrameQuadrupole_ZZ*gqzz3 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy3+atomI.labFrameQuadrupole_XZ*gqxz3+atomI.labFrameQuadrupole_YZ*gqyz3)) + atomJ.inducedDipole[2]*(atomI.labFrameQuadrupole_XX*gqxx4+atomI.labFrameQuadrupole_YY*gqyy4+atomI.labFrameQuadrupole_ZZ*gqzz4 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy4+atomI.labFrameQuadrupole_XZ*gqxz4+atomI.labFrameQuadrupole_YZ*gqyz4)); ewki = atomI.q*(atomJ.inducedDipole[0]*gux1+atomJ.inducedDipole[1]*guy1+atomJ.inducedDipole[2]*guz1) - atomJ.q*(atomI.inducedDipole[0]*gc2+atomI.inducedDipole[1]*gc3+atomI.inducedDipole[2]*gc4) - atomI.inducedDipole[0]*(atomJ.labFrameQuadrupole_XX*gqxx2+atomJ.labFrameQuadrupole_YY*gqyy2+atomJ.labFrameQuadrupole_ZZ*gqzz2 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy2+atomJ.labFrameQuadrupole_XZ*gqxz2+atomJ.labFrameQuadrupole_YZ*gqyz2)) - atomI.inducedDipole[1]*(atomJ.labFrameQuadrupole_XX*gqxx3+atomJ.labFrameQuadrupole_YY*gqyy3+atomJ.labFrameQuadrupole_ZZ*gqzz3 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy3+atomJ.labFrameQuadrupole_XZ*gqxz3+atomJ.labFrameQuadrupole_YZ*gqyz3)) - atomI.inducedDipole[2]*(atomJ.labFrameQuadrupole_XX*gqxx4+atomJ.labFrameQuadrupole_YY*gqyy4+atomJ.labFrameQuadrupole_ZZ*gqzz4 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy4+atomJ.labFrameQuadrupole_XZ*gqxz4+atomJ.labFrameQuadrupole_YZ*gqyz4)) + atomJ.inducedDipole[0]*(atomI.labFrameQuadrupole_XX*gux5+atomI.labFrameQuadrupole_YY*gux8+atomI.labFrameQuadrupole_ZZ*gux10 +2.0f*(atomI.labFrameQuadrupole_XY*gux6+atomI.labFrameQuadrupole_XZ*gux7+atomI.labFrameQuadrupole_YZ*gux9)) + atomJ.inducedDipole[1]*(atomI.labFrameQuadrupole_XX*guy5+atomI.labFrameQuadrupole_YY*guy8+atomI.labFrameQuadrupole_ZZ*guy10 +2.0f*(atomI.labFrameQuadrupole_XY*guy6+atomI.labFrameQuadrupole_XZ*guy7+atomI.labFrameQuadrupole_YZ*guy9)) + atomJ.inducedDipole[2]*(atomI.labFrameQuadrupole_XX*guz5+atomI.labFrameQuadrupole_YY*guz8+atomI.labFrameQuadrupole_ZZ*guz10 +2.0f*(atomI.labFrameQuadrupole_XY*guz6+atomI.labFrameQuadrupole_XZ*guz7+atomI.labFrameQuadrupole_YZ*guz9)); // electrostatic solvation free energy gradient of the permanent // multipoles in the reaction potential of the induced dipoles float dpsymdx = - atomI.labFrameDipole[0]*(sxk*gux5+syk*guy5+szk*guz5) - atomI.labFrameDipole[1]*(sxk*gux6+syk*guy6+szk*guz6) - atomI.labFrameDipole[2]*(sxk*gux7+syk*guy7+szk*guz7) - atomJ.labFrameDipole[0]*(sxi*gux5+syi*guy5+szi*guz5) - atomJ.labFrameDipole[1]*(sxi*gux6+syi*guy6+szi*guz6) - atomJ.labFrameDipole[2]*(sxi*gux7+syi*guy7+szi*guz7); dpwidx = atomI.q*(sxk*gc5+syk*gc6+szk*gc7) - atomJ.q*(sxi*gux2+syi*guy2+szi*guz2) - sxi*(atomJ.labFrameQuadrupole_XX*gux11+atomJ.labFrameQuadrupole_YY*gux14+atomJ.labFrameQuadrupole_ZZ*gux16 +2.0f*(atomJ.labFrameQuadrupole_XY*gux12+atomJ.labFrameQuadrupole_XZ*gux13+atomJ.labFrameQuadrupole_YZ*gux15)) - syi*(atomJ.labFrameQuadrupole_XX*guy11+atomJ.labFrameQuadrupole_YY*guy14+atomJ.labFrameQuadrupole_ZZ*guy16 +2.0f*(atomJ.labFrameQuadrupole_XY*guy12+atomJ.labFrameQuadrupole_XZ*guy13+atomJ.labFrameQuadrupole_YZ*guy15)) - szi*(atomJ.labFrameQuadrupole_XX*guz11+atomJ.labFrameQuadrupole_YY*guz14+atomJ.labFrameQuadrupole_ZZ*guz16 +2.0f*(atomJ.labFrameQuadrupole_XY*guz12+atomJ.labFrameQuadrupole_XZ*guz13+atomJ.labFrameQuadrupole_YZ*guz15)) + sxk*(atomI.labFrameQuadrupole_XX*gqxx5+atomI.labFrameQuadrupole_YY*gqyy5+atomI.labFrameQuadrupole_ZZ*gqzz5 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy5+atomI.labFrameQuadrupole_XZ*gqxz5+atomI.labFrameQuadrupole_YZ*gqyz5)) + syk*(atomI.labFrameQuadrupole_XX*gqxx6+atomI.labFrameQuadrupole_YY*gqyy6+atomI.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy6+atomI.labFrameQuadrupole_XZ*gqxz6+atomI.labFrameQuadrupole_YZ*gqyz6)) + szk*(atomI.labFrameQuadrupole_XX*gqxx7+atomI.labFrameQuadrupole_YY*gqyy7+atomI.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy7+atomI.labFrameQuadrupole_XZ*gqxz7+atomI.labFrameQuadrupole_YZ*gqyz7)); dpwkdx = atomI.q*(sxk*gux2+syk*guy2+szk*guz2) - atomJ.q*(sxi*gc5+syi*gc6+szi*gc7) - sxi*(atomJ.labFrameQuadrupole_XX*gqxx5+atomJ.labFrameQuadrupole_YY*gqyy5+atomJ.labFrameQuadrupole_ZZ*gqzz5 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy5+atomJ.labFrameQuadrupole_XZ*gqxz5+atomJ.labFrameQuadrupole_YZ*gqyz5)) - syi*(atomJ.labFrameQuadrupole_XX*gqxx6+atomJ.labFrameQuadrupole_YY*gqyy6+atomJ.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy6+atomJ.labFrameQuadrupole_XZ*gqxz6+atomJ.labFrameQuadrupole_YZ*gqyz6)) - szi*(atomJ.labFrameQuadrupole_XX*gqxx7+atomJ.labFrameQuadrupole_YY*gqyy7+atomJ.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy7+atomJ.labFrameQuadrupole_XZ*gqxz7+atomJ.labFrameQuadrupole_YZ*gqyz7)) + sxk*(atomI.labFrameQuadrupole_XX*gux11+atomI.labFrameQuadrupole_YY*gux14+atomI.labFrameQuadrupole_ZZ*gux16 +2.0f*(atomI.labFrameQuadrupole_XY*gux12+atomI.labFrameQuadrupole_XZ*gux13+atomI.labFrameQuadrupole_YZ*gux15)) + syk*(atomI.labFrameQuadrupole_XX*guy11+atomI.labFrameQuadrupole_YY*guy14+atomI.labFrameQuadrupole_ZZ*guy16 +2.0f*(atomI.labFrameQuadrupole_XY*guy12+atomI.labFrameQuadrupole_XZ*guy13+atomI.labFrameQuadrupole_YZ*guy15)) + szk*(atomI.labFrameQuadrupole_XX*guz11+atomI.labFrameQuadrupole_YY*guz14+atomI.labFrameQuadrupole_ZZ*guz16 +2.0f*(atomI.labFrameQuadrupole_XY*guz12+atomI.labFrameQuadrupole_XZ*guz13+atomI.labFrameQuadrupole_YZ*guz15)); dpdx = 0.5f * (dpsymdx + 0.5f*(dpwidx + dpwkdx)); dpsymdy = -atomI.labFrameDipole[0]*(sxk*gux6+syk*guy6+szk*guz6) - atomI.labFrameDipole[1]*(sxk*gux8+syk*guy8+szk*guz8) - atomI.labFrameDipole[2]*(sxk*gux9+syk*guy9+szk*guz9) - atomJ.labFrameDipole[0]*(sxi*gux6+syi*guy6+szi*guz6) - atomJ.labFrameDipole[1]*(sxi*gux8+syi*guy8+szi*guz8) - atomJ.labFrameDipole[2]*(sxi*gux9+syi*guy9+szi*guz9); dpwidy = atomI.q*(sxk*gc6+syk*gc8+szk*gc9) - atomJ.q*(sxi*gux3+syi*guy3+szi*guz3) - sxi*(atomJ.labFrameQuadrupole_XX*gux12+atomJ.labFrameQuadrupole_YY*gux17+atomJ.labFrameQuadrupole_ZZ*gux19 +2.0f*(atomJ.labFrameQuadrupole_XY*gux14+atomJ.labFrameQuadrupole_XZ*gux15+atomJ.labFrameQuadrupole_YZ*gux18)) - syi*(atomJ.labFrameQuadrupole_XX*guy12+atomJ.labFrameQuadrupole_YY*guy17+atomJ.labFrameQuadrupole_ZZ*guy19 +2.0f*(atomJ.labFrameQuadrupole_XY*guy14+atomJ.labFrameQuadrupole_XZ*guy15+atomJ.labFrameQuadrupole_YZ*guy18)) - szi*(atomJ.labFrameQuadrupole_XX*guz12+atomJ.labFrameQuadrupole_YY*guz17+atomJ.labFrameQuadrupole_ZZ*guz19 +2.0f*(atomJ.labFrameQuadrupole_XY*guz14+atomJ.labFrameQuadrupole_XZ*guz15+atomJ.labFrameQuadrupole_YZ*guz18)) + sxk*(atomI.labFrameQuadrupole_XX*gqxx6+atomI.labFrameQuadrupole_YY*gqyy6+atomI.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy6+atomI.labFrameQuadrupole_XZ*gqxz6+atomI.labFrameQuadrupole_YZ*gqyz6)) + syk*(atomI.labFrameQuadrupole_XX*gqxx8+atomI.labFrameQuadrupole_YY*gqyy8+atomI.labFrameQuadrupole_ZZ*gqzz8 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy8+atomI.labFrameQuadrupole_XZ*gqxz8+atomI.labFrameQuadrupole_YZ*gqyz8)) + szk*(atomI.labFrameQuadrupole_XX*gqxx9+atomI.labFrameQuadrupole_YY*gqyy9+atomI.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy9+atomI.labFrameQuadrupole_XZ*gqxz9+atomI.labFrameQuadrupole_YZ*gqyz9)); dpwkdy = atomI.q*(sxk*gux3+syk*guy3+szk*guz3) - atomJ.q*(sxi*gc6+syi*gc8+szi*gc9) - sxi*(atomJ.labFrameQuadrupole_XX*gqxx6+atomJ.labFrameQuadrupole_YY*gqyy6+atomJ.labFrameQuadrupole_ZZ*gqzz6 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy6+atomJ.labFrameQuadrupole_XZ*gqxz6+atomJ.labFrameQuadrupole_YZ*gqyz6)) - syi*(atomJ.labFrameQuadrupole_XX*gqxx8+atomJ.labFrameQuadrupole_YY*gqyy8+atomJ.labFrameQuadrupole_ZZ*gqzz8 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy8+atomJ.labFrameQuadrupole_XZ*gqxz8+atomJ.labFrameQuadrupole_YZ*gqyz8)) - szi*(atomJ.labFrameQuadrupole_XX*gqxx9+atomJ.labFrameQuadrupole_YY*gqyy9+atomJ.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy9+atomJ.labFrameQuadrupole_XZ*gqxz9+atomJ.labFrameQuadrupole_YZ*gqyz9)) + sxk*(atomI.labFrameQuadrupole_XX*gux12+atomI.labFrameQuadrupole_YY*gux17+atomI.labFrameQuadrupole_ZZ*gux19 +2.0f*(atomI.labFrameQuadrupole_XY*gux14+atomI.labFrameQuadrupole_XZ*gux15+atomI.labFrameQuadrupole_YZ*gux18)) + syk*(atomI.labFrameQuadrupole_XX*guy12+atomI.labFrameQuadrupole_YY*guy17+atomI.labFrameQuadrupole_ZZ*guy19 +2.0f*(atomI.labFrameQuadrupole_XY*guy14+atomI.labFrameQuadrupole_XZ*guy15+atomI.labFrameQuadrupole_YZ*guy18)) + szk*(atomI.labFrameQuadrupole_XX*guz12+atomI.labFrameQuadrupole_YY*guz17+atomI.labFrameQuadrupole_ZZ*guz19 +2.0f*(atomI.labFrameQuadrupole_XY*guz14+atomI.labFrameQuadrupole_XZ*guz15+atomI.labFrameQuadrupole_YZ*guz18)); dpdy = 0.5f * (dpsymdy + 0.5f*(dpwidy + dpwkdy)); dpsymdz = -atomI.labFrameDipole[0]*(sxk*gux7+syk*guy7+szk*guz7) - atomI.labFrameDipole[1]*(sxk*gux9+syk*guy9+szk*guz9) - atomI.labFrameDipole[2]*(sxk*gux10+syk*guy10+szk*guz10) - atomJ.labFrameDipole[0]*(sxi*gux7+syi*guy7+szi*guz7) - atomJ.labFrameDipole[1]*(sxi*gux9+syi*guy9+szi*guz9) - atomJ.labFrameDipole[2]*(sxi*gux10+syi*guy10+szi*guz10); dpwidz = atomI.q*(sxk*gc7+syk*gc9+szk*gc10) - atomJ.q*(sxi*gux4+syi*guy4+szi*guz4) - sxi*(atomJ.labFrameQuadrupole_XX*gux13+atomJ.labFrameQuadrupole_YY*gux18+atomJ.labFrameQuadrupole_ZZ*gux20 +2.0f*(atomJ.labFrameQuadrupole_XY*gux15+atomJ.labFrameQuadrupole_XZ*gux16+atomJ.labFrameQuadrupole_YZ*gux19)) - syi*(atomJ.labFrameQuadrupole_XX*guy13+atomJ.labFrameQuadrupole_YY*guy18+atomJ.labFrameQuadrupole_ZZ*guy20 +2.0f*(atomJ.labFrameQuadrupole_XY*guy15+atomJ.labFrameQuadrupole_XZ*guy16+atomJ.labFrameQuadrupole_YZ*guy19)) - szi*(atomJ.labFrameQuadrupole_XX*guz13+atomJ.labFrameQuadrupole_YY*guz18+atomJ.labFrameQuadrupole_ZZ*guz20 +2.0f*(atomJ.labFrameQuadrupole_XY*guz15+atomJ.labFrameQuadrupole_XZ*guz16+atomJ.labFrameQuadrupole_YZ*guz19)) + sxk*(atomI.labFrameQuadrupole_XX*gqxx7+atomI.labFrameQuadrupole_YY*gqyy7+atomI.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy7+atomI.labFrameQuadrupole_XZ*gqxz7+atomI.labFrameQuadrupole_YZ*gqyz7)) + syk*(atomI.labFrameQuadrupole_XX*gqxx9+atomI.labFrameQuadrupole_YY*gqyy9+atomI.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy9+atomI.labFrameQuadrupole_XZ*gqxz9+atomI.labFrameQuadrupole_YZ*gqyz9)) + szk*(atomI.labFrameQuadrupole_XX*gqxx10+atomI.labFrameQuadrupole_YY*gqyy10+atomI.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy10+atomI.labFrameQuadrupole_XZ*gqxz10+atomI.labFrameQuadrupole_YZ*gqyz10)); dpwkdz = atomI.q*(sxk*gux4+syk*guy4+szk*guz4) - atomJ.q*(sxi*gc7+syi*gc9+szi*gc10) - sxi*(atomJ.labFrameQuadrupole_XX*gqxx7+atomJ.labFrameQuadrupole_YY*gqyy7+atomJ.labFrameQuadrupole_ZZ*gqzz7 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy7+atomJ.labFrameQuadrupole_XZ*gqxz7+atomJ.labFrameQuadrupole_YZ*gqyz7)) - syi*(atomJ.labFrameQuadrupole_XX*gqxx9+atomJ.labFrameQuadrupole_YY*gqyy9+atomJ.labFrameQuadrupole_ZZ*gqzz9 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy9+atomJ.labFrameQuadrupole_XZ*gqxz9+atomJ.labFrameQuadrupole_YZ*gqyz9)) - szi*(atomJ.labFrameQuadrupole_XX*gqxx10+atomJ.labFrameQuadrupole_YY*gqyy10+atomJ.labFrameQuadrupole_ZZ*gqzz10 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy10+atomJ.labFrameQuadrupole_XZ*gqxz10+atomJ.labFrameQuadrupole_YZ*gqyz10)) + sxk*(atomI.labFrameQuadrupole_XX*gux13+atomI.labFrameQuadrupole_YY*gux18+atomI.labFrameQuadrupole_ZZ*gux20 +2.0f*(atomI.labFrameQuadrupole_XY*gux15+atomI.labFrameQuadrupole_XZ*gux16+atomI.labFrameQuadrupole_YZ*gux19)) + syk*(atomI.labFrameQuadrupole_XX*guy13+atomI.labFrameQuadrupole_YY*guy18+atomI.labFrameQuadrupole_ZZ*guy20 +2.0f*(atomI.labFrameQuadrupole_XY*guy15+atomI.labFrameQuadrupole_XZ*guy16+atomI.labFrameQuadrupole_YZ*guy19)) + szk*(atomI.labFrameQuadrupole_XX*guz13+atomI.labFrameQuadrupole_YY*guz18+atomI.labFrameQuadrupole_ZZ*guz20 +2.0f*(atomI.labFrameQuadrupole_XY*guz15+atomI.labFrameQuadrupole_XZ*guz16+atomI.labFrameQuadrupole_YZ*guz19)); dpdz = 0.5f * (dpsymdz + 0.5f*(dpwidz + dpwkdz)); // effective radii chain rule terms for the // electrostatic solvation free energy gradient of the permanent // multipoles in the reaction potential of the induced dipoles dsymdr = -atomI.labFrameDipole[0]*(sxk*gux22+syk*guy22+szk*guz22) - atomI.labFrameDipole[1]*(sxk*gux23+syk*guy23+szk*guz23) - atomI.labFrameDipole[2]*(sxk*gux24+syk*guy24+szk*guz24) - atomJ.labFrameDipole[0]*(sxi*gux22+syi*guy22+szi*guz22) - atomJ.labFrameDipole[1]*(sxi*gux23+syi*guy23+szi*guz23) - atomJ.labFrameDipole[2]*(sxi*gux24+syi*guy24+szi*guz24); dwipdr = atomI.q*(sxk*gc22+syk*gc23+szk*gc24) - atomJ.q*(sxi*gux21+syi*guy21+szi*guz21) - sxi*(atomJ.labFrameQuadrupole_XX*gux25+atomJ.labFrameQuadrupole_YY*gux28+atomJ.labFrameQuadrupole_ZZ*gux30 +2.0f*(atomJ.labFrameQuadrupole_XY*gux26+atomJ.labFrameQuadrupole_XZ*gux27+atomJ.labFrameQuadrupole_YZ*gux29)) - syi*(atomJ.labFrameQuadrupole_XX*guy25+atomJ.labFrameQuadrupole_YY*guy28+atomJ.labFrameQuadrupole_ZZ*guy30 +2.0f*(atomJ.labFrameQuadrupole_XY*guy26+atomJ.labFrameQuadrupole_XZ*guy27+atomJ.labFrameQuadrupole_YZ*guy29)) - szi*(atomJ.labFrameQuadrupole_XX*guz25+atomJ.labFrameQuadrupole_YY*guz28+atomJ.labFrameQuadrupole_ZZ*guz30 +2.0f*(atomJ.labFrameQuadrupole_XY*guz26+atomJ.labFrameQuadrupole_XZ*guz27+atomJ.labFrameQuadrupole_YZ*guz29)) + sxk*(atomI.labFrameQuadrupole_XX*gqxx22+atomI.labFrameQuadrupole_YY*gqyy22+atomI.labFrameQuadrupole_ZZ*gqzz22 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy22+atomI.labFrameQuadrupole_XZ*gqxz22+atomI.labFrameQuadrupole_YZ*gqyz22)) + syk*(atomI.labFrameQuadrupole_XX*gqxx23+atomI.labFrameQuadrupole_YY*gqyy23+atomI.labFrameQuadrupole_ZZ*gqzz23 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy23+atomI.labFrameQuadrupole_XZ*gqxz23+atomI.labFrameQuadrupole_YZ*gqyz23)) + szk*(atomI.labFrameQuadrupole_XX*gqxx24+atomI.labFrameQuadrupole_YY*gqyy24+atomI.labFrameQuadrupole_ZZ*gqzz24 +2.0f*(atomI.labFrameQuadrupole_XY*gqxy24+atomI.labFrameQuadrupole_XZ*gqxz24+atomI.labFrameQuadrupole_YZ*gqyz24)); dwkpdr = atomI.q*(sxk*gux21+syk*guy21+szk*guz21) - atomJ.q*(sxi*gc22+syi*gc23+szi*gc24) - sxi*(atomJ.labFrameQuadrupole_XX*gqxx22+atomJ.labFrameQuadrupole_YY*gqyy22+atomJ.labFrameQuadrupole_ZZ*gqzz22 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy22+atomJ.labFrameQuadrupole_XZ*gqxz22+atomJ.labFrameQuadrupole_YZ*gqyz22)) - syi*(atomJ.labFrameQuadrupole_XX*gqxx23+atomJ.labFrameQuadrupole_YY*gqyy23+atomJ.labFrameQuadrupole_ZZ*gqzz23 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy23+atomJ.labFrameQuadrupole_XZ*gqxz23+atomJ.labFrameQuadrupole_YZ*gqyz23)) - szi*(atomJ.labFrameQuadrupole_XX*gqxx24+atomJ.labFrameQuadrupole_YY*gqyy24+atomJ.labFrameQuadrupole_ZZ*gqzz24 +2.0f*(atomJ.labFrameQuadrupole_XY*gqxy24+atomJ.labFrameQuadrupole_XZ*gqxz24+atomJ.labFrameQuadrupole_YZ*gqyz24)) + sxk*(atomI.labFrameQuadrupole_XX*gux25+atomI.labFrameQuadrupole_YY*gux28+atomI.labFrameQuadrupole_ZZ*gux30 +2.0f*(atomI.labFrameQuadrupole_XY*gux26+atomI.labFrameQuadrupole_XZ*gux27+atomI.labFrameQuadrupole_YZ*gux29)) + syk*(atomI.labFrameQuadrupole_XX*guy25+atomI.labFrameQuadrupole_YY*guy28+atomI.labFrameQuadrupole_ZZ*guy30 +2.0f*(atomI.labFrameQuadrupole_XY*guy26+atomI.labFrameQuadrupole_XZ*guy27+atomI.labFrameQuadrupole_YZ*guy29)) + szk*(atomI.labFrameQuadrupole_XX*guz25+atomI.labFrameQuadrupole_YY*guz28+atomI.labFrameQuadrupole_ZZ*guz30 +2.0f*(atomI.labFrameQuadrupole_XY*guz26+atomI.labFrameQuadrupole_XZ*guz27+atomI.labFrameQuadrupole_YZ*guz29)); dsumdr = dsymdr + 0.5f*(dwipdr + dwkpdr); dpbi = 0.5f*atomJ.bornRadius*dsumdr; dpbk = 0.5f*atomI.bornRadius*dsumdr; // mutual polarization electrostatic solvation free energy gradient if( cAmoebaSim.polarizationType == 0 ){ dpdx = dpdx - 0.5f * (atomI.inducedDipole[0]*(atomJ.inducedDipoleP[0]*gux5+atomJ.inducedDipoleP[1]*gux6+atomJ.inducedDipoleP[2]*gux7) +atomI.inducedDipole[1]*(atomJ.inducedDipoleP[0]*guy5+atomJ.inducedDipoleP[1]*guy6+atomJ.inducedDipoleP[2]*guy7) +atomI.inducedDipole[2]*(atomJ.inducedDipoleP[0]*guz5+atomJ.inducedDipoleP[1]*guz6+atomJ.inducedDipoleP[2]*guz7) +atomJ.inducedDipole[0]*(atomI.inducedDipoleP[0]*gux5+atomI.inducedDipoleP[1]*gux6+atomI.inducedDipoleP[2]*gux7) +atomJ.inducedDipole[1]*(atomI.inducedDipoleP[0]*guy5+atomI.inducedDipoleP[1]*guy6+atomI.inducedDipoleP[2]*guy7) +atomJ.inducedDipole[2]*(atomI.inducedDipoleP[0]*guz5+atomI.inducedDipoleP[1]*guz6+atomI.inducedDipoleP[2]*guz7)); dpdy = dpdy - 0.5f * (atomI.inducedDipole[0]*(atomJ.inducedDipoleP[0]*gux6+atomJ.inducedDipoleP[1]*gux8+atomJ.inducedDipoleP[2]*gux9) +atomI.inducedDipole[1]*(atomJ.inducedDipoleP[0]*guy6+atomJ.inducedDipoleP[1]*guy8+atomJ.inducedDipoleP[2]*guy9) +atomI.inducedDipole[2]*(atomJ.inducedDipoleP[0]*guz6+atomJ.inducedDipoleP[1]*guz8+atomJ.inducedDipoleP[2]*guz9) +atomJ.inducedDipole[0]*(atomI.inducedDipoleP[0]*gux6+atomI.inducedDipoleP[1]*gux8+atomI.inducedDipoleP[2]*gux9) +atomJ.inducedDipole[1]*(atomI.inducedDipoleP[0]*guy6+atomI.inducedDipoleP[1]*guy8+atomI.inducedDipoleP[2]*guy9) +atomJ.inducedDipole[2]*(atomI.inducedDipoleP[0]*guz6+atomI.inducedDipoleP[1]*guz8+atomI.inducedDipoleP[2]*guz9)); dpdz = dpdz - 0.5f * (atomI.inducedDipole[0]*(atomJ.inducedDipoleP[0]*gux7+atomJ.inducedDipoleP[1]*gux9+atomJ.inducedDipoleP[2]*gux10) +atomI.inducedDipole[1]*(atomJ.inducedDipoleP[0]*guy7+atomJ.inducedDipoleP[1]*guy9+atomJ.inducedDipoleP[2]*guy10) +atomI.inducedDipole[2]*(atomJ.inducedDipoleP[0]*guz7+atomJ.inducedDipoleP[1]*guz9+atomJ.inducedDipoleP[2]*guz10) +atomJ.inducedDipole[0]*(atomI.inducedDipoleP[0]*gux7+atomI.inducedDipoleP[1]*gux9+atomI.inducedDipoleP[2]*gux10) +atomJ.inducedDipole[1]*(atomI.inducedDipoleP[0]*guy7+atomI.inducedDipoleP[1]*guy9+atomI.inducedDipoleP[2]*guy10) +atomJ.inducedDipole[2]*(atomI.inducedDipoleP[0]*guz7+atomI.inducedDipoleP[1]*guz9+atomI.inducedDipoleP[2]*guz10)); duvdr = atomI.inducedDipole[0]*(atomJ.inducedDipoleP[0]*gux22+atomJ.inducedDipoleP[1]*gux23+atomJ.inducedDipoleP[2]*gux24) + atomI.inducedDipole[1]*(atomJ.inducedDipoleP[0]*guy22+atomJ.inducedDipoleP[1]*guy23+atomJ.inducedDipoleP[2]*guy24) + atomI.inducedDipole[2]*(atomJ.inducedDipoleP[0]*guz22+atomJ.inducedDipoleP[1]*guz23+atomJ.inducedDipoleP[2]*guz24) + atomJ.inducedDipole[0]*(atomI.inducedDipoleP[0]*gux22+atomI.inducedDipoleP[1]*gux23+atomI.inducedDipoleP[2]*gux24) + atomJ.inducedDipole[1]*(atomI.inducedDipoleP[0]*guy22+atomI.inducedDipoleP[1]*guy23+atomI.inducedDipoleP[2]*guy24) + atomJ.inducedDipole[2]*(atomI.inducedDipoleP[0]*guz22+atomI.inducedDipoleP[1]*guz23+atomI.inducedDipoleP[2]*guz24); dpbi = dpbi - 0.5f*atomJ.bornRadius*duvdr; dpbk = dpbk - 0.5f*atomI.bornRadius*duvdr; } // torque due to induced reaction field on permanent dipoles float fid1 = 0.5f * (sxk*gux2+syk*guy2+szk*guz2); float fid2 = 0.5f * (sxk*gux3+syk*guy3+szk*guz3); float fid3 = 0.5f * (sxk*gux4+syk*guy4+szk*guz4); float fkd1 = 0.5f * (sxi*gux2+syi*guy2+szi*guz2); float fkd2 = 0.5f * (sxi*gux3+syi*guy3+szi*guz3); float fkd3 = 0.5f * (sxi*gux4+syi*guy4+szi*guz4); float trqi1 = atomI.labFrameDipole[1]*fid3 - atomI.labFrameDipole[2]*fid2; float trqi2 = atomI.labFrameDipole[2]*fid1 - atomI.labFrameDipole[0]*fid3; float trqi3 = atomI.labFrameDipole[0]*fid2 - atomI.labFrameDipole[1]*fid1; float trqi_k1 = atomJ.labFrameDipole[1]*fkd3 - atomJ.labFrameDipole[2]*fkd2; float trqi_k2 = atomJ.labFrameDipole[2]*fkd1 - atomJ.labFrameDipole[0]*fkd3; float trqi_k3 = atomJ.labFrameDipole[0]*fkd2 - atomJ.labFrameDipole[1]*fkd1; // torque due to induced reaction field gradient on quadrupoles; float fidg11 = -0.25f * ( (sxk*gqxx2+syk*gqxx3+szk*gqxx4) + (sxk*gux5+syk*guy5+szk*guz5)); float fidg12 = -0.25f * ( (sxk*gqxy2+syk*gqxy3+szk*gqxy4) + (sxk*gux6+syk*guy6+szk*guz6)); float fidg13 = -0.25f * ( (sxk*gqxz2+syk*gqxz3+szk*gqxz4) + (sxk*gux7+syk*guy7+szk*guz7)); float fidg22 = -0.25f * ( (sxk*gqyy2+syk*gqyy3+szk*gqyy4) + (sxk*gux8+syk*guy8+szk*guz8)); float fidg23 = -0.25f * ( (sxk*gqyz2+syk*gqyz3+szk*gqyz4) + (sxk*gux9+syk*guy9+szk*guz9)); float fidg33 = -0.25f * ( (sxk*gqzz2+syk*gqzz3+szk*gqzz4) + (sxk*gux10+syk*guy10+szk*guz10)); float fidg21 = fidg12; float fidg31 = fidg13; float fidg32 = fidg23; float fkdg11 = 0.25f * ( (sxi*gqxx2+syi*gqxx3+szi*gqxx4) + (sxi*gux5+syi*guy5+szi*guz5)); float fkdg12 = 0.25f * ( (sxi*gqxy2+syi*gqxy3+szi*gqxy4) + (sxi*gux6+syi*guy6+szi*guz6)); float fkdg13 = 0.25f * ( (sxi*gqxz2+syi*gqxz3+szi*gqxz4) + (sxi*gux7+syi*guy7+szi*guz7)); float fkdg22 = 0.25f * ( (sxi*gqyy2+syi*gqyy3+szi*gqyy4) + (sxi*gux8+syi*guy8+szi*guz8)); float fkdg23 = 0.25f * ( (sxi*gqyz2+syi*gqyz3+szi*gqyz4) + (sxi*gux9+syi*guy9+szi*guz9)); float fkdg33 = 0.25f * ( (sxi*gqzz2+syi*gqzz3+szi*gqzz4) + (sxi*gux10+syi*guy10+szi*guz10)); float fkdg21 = fkdg12; float fkdg31 = fkdg13; float fkdg32 = fkdg23; trqi1 += 2.0f*(atomI.labFrameQuadrupole_XY*fidg13+atomI.labFrameQuadrupole_YY*fidg23+atomI.labFrameQuadrupole_YZ*fidg33 -atomI.labFrameQuadrupole_XZ*fidg12-atomI.labFrameQuadrupole_YZ*fidg22-atomI.labFrameQuadrupole_ZZ*fidg32); trqi2 += 2.0f*(atomI.labFrameQuadrupole_XZ*fidg11+atomI.labFrameQuadrupole_YZ*fidg21+atomI.labFrameQuadrupole_ZZ*fidg31 -atomI.labFrameQuadrupole_XX*fidg13-atomI.labFrameQuadrupole_XY*fidg23-atomI.labFrameQuadrupole_XZ*fidg33); trqi3 += 2.0f*(atomI.labFrameQuadrupole_XX*fidg12+atomI.labFrameQuadrupole_XY*fidg22+atomI.labFrameQuadrupole_XZ*fidg32 -atomI.labFrameQuadrupole_XY*fidg11-atomI.labFrameQuadrupole_YY*fidg21-atomI.labFrameQuadrupole_YZ*fidg31); trqi_k1 += 2.0f* (atomJ.labFrameQuadrupole_XY*fkdg13+atomJ.labFrameQuadrupole_YY*fkdg23+atomJ.labFrameQuadrupole_YZ*fkdg33 -atomJ.labFrameQuadrupole_XZ*fkdg12-atomJ.labFrameQuadrupole_YZ*fkdg22-atomJ.labFrameQuadrupole_ZZ*fkdg32); trqi_k2 += 2.0f* (atomJ.labFrameQuadrupole_XZ*fkdg11+atomJ.labFrameQuadrupole_YZ*fkdg21+atomJ.labFrameQuadrupole_ZZ*fkdg31 -atomJ.labFrameQuadrupole_XX*fkdg13-atomJ.labFrameQuadrupole_XY*fkdg23-atomJ.labFrameQuadrupole_XZ*fkdg33); trqi_k3 += 2.0f* (atomJ.labFrameQuadrupole_XX*fkdg12+atomJ.labFrameQuadrupole_XY*fkdg22+atomJ.labFrameQuadrupole_XZ*fkdg32 -atomJ.labFrameQuadrupole_XY*fkdg11-atomJ.labFrameQuadrupole_YY*fkdg21-atomJ.labFrameQuadrupole_YZ*fkdg31); // total permanent and induced energies for this interaction e = esym + 0.5f*(ewi+ewk); ei = 0.5f * (esymi + 0.5f*(ewii+ewki)); outputForce[0] = (dedx + dpdx); outputForce[1] = (dedy + dpdy); outputForce[2] = (dedz + dpdz); outputTorque[0][0] = (trq1 + trqi1); outputTorque[0][1] = (trq2 + trqi2); outputTorque[0][2] = (trq3 + trqi3); outputTorque[1][0] = (trq_k1 + trqi_k1); outputTorque[1][1] = (trq_k2 + trqi_k2); outputTorque[1][2] = (trq_k3 + trqi_k3); outputBorn[0] = drbi; outputBorn[1] = drbk; outputBornPolar[0] = dpbi; outputBornPolar[1] = dpbk; *outputEnergy = (e + ei); } #undef SUB_METHOD_NAME #undef F1 #define SUB_METHOD_NAME(a, b) a##F1##b #define F1 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef F1 #undef SUB_METHOD_NAME #undef F2 #define SUB_METHOD_NAME(a, b) a##F2##b #define F2 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef F2 #undef SUB_METHOD_NAME /* #undef F1 #undef F2 #define SUB_METHOD_NAME(a, b) a##F1F2##b #define F1 #define F2 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef F1 #undef F2 #undef SUB_METHOD_NAME */ #undef SUB_METHOD_NAME #undef T1 #define SUB_METHOD_NAME(a, b) a##T1##b #define T1 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef T1 #undef SUB_METHOD_NAME #undef T2 #define SUB_METHOD_NAME(a, b) a##T2##b #define T2 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef T2 #undef SUB_METHOD_NAME #undef T1 #undef T2 #define SUB_METHOD_NAME(a, b) a##T1T2##b #define T1 #define T2 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef T1 #undef T2 #undef SUB_METHOD_NAME #undef SUB_METHOD_NAME #undef B1 #define SUB_METHOD_NAME(a, b) a##B1##b #define B1 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef B1 #undef SUB_METHOD_NAME #undef B2 #define SUB_METHOD_NAME(a, b) a##B2##b #define B2 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef B2 #undef SUB_METHOD_NAME #undef B2 #define SUB_METHOD_NAME(a, b) a##B1B2##b #define B1 #define B2 #include "kCalculateAmoebaCudaKirkwood_b.h" #undef B1 #undef B2 #undef SUB_METHOD_NAME #ifdef INCLUDE_TORQUE __device__ void calculateKirkwoodPairIxn_kernel( KirkwoodParticle& atomI, KirkwoodParticle& atomJ, float forceFactor, float* outputEnergy ){ //#define Original #define New #ifdef Original float outputBornPolar[2]; return calculateKirkwoodPairIxnOrig_kernel( atomI, atomJ, outputForce, outputTorque, outputBornPolar, outputEnergy ); #endif #ifdef New float force[3]; float energy; calculateKirkwoodPairIxnF1_kernel( atomI, atomJ, &energy, force); calculateKirkwoodPairIxnF2_kernel( atomI, atomJ, &energy, force); force[0] *= 0.5f; force[1] *= 0.5f; force[2] *= 0.5f; atomI.force[0] += force[0]; atomI.force[1] += force[1]; atomI.force[2] += force[2]; *outputEnergy += 0.5f*forceFactor*energy; if( forceFactor == 1.0f ){ atomJ.force[0] -= force[0]; atomJ.force[1] -= force[1]; atomJ.force[2] -= force[2]; } calculateKirkwoodPairIxnT1_kernel( atomI, atomJ ); calculateKirkwoodPairIxnT2_kernel( atomI, atomJ ); //calculateKirkwoodPairIxnT1T2_kernel( atomI, atomJ ); if( forceFactor == 1.0f ){ calculateKirkwoodPairIxnT1_kernel( atomJ, atomI ); calculateKirkwoodPairIxnT2_kernel( atomJ, atomI ); //calculateKirkwoodPairIxnT1T2_kernel( atomJ, atomI ); } calculateKirkwoodPairIxnB1B2_kernel( atomI, atomJ ); return; #endif } #endif __device__ void zeroKirkwoodParticleSharedField( struct KirkwoodParticle* sA ) { // zero shared fields sA->force[0] = 0.0f; sA->force[1] = 0.0f; sA->force[2] = 0.0f; #ifdef INCLUDE_TORQUE sA->torque[0] = 0.0f; sA->torque[1] = 0.0f; sA->torque[2] = 0.0f; #endif sA->dBornRadius = 0.0f; sA->dBornRadiusPolar = 0.0f; } // Include versions of the kernels for N^2 calculations. #undef USE_OUTPUT_BUFFER_PER_WARP #define METHOD_NAME(a, b) a##N2##b #include "kCalculateAmoebaCudaKirkwood.h" #define USE_OUTPUT_BUFFER_PER_WARP #undef METHOD_NAME #define METHOD_NAME(a, b) a##N2ByWarp##b #include "kCalculateAmoebaCudaKirkwood.h" // reduce psWorkArray_1_1 -> dBorn // reduce psWorkArray_1_2 -> dBornPolar __global__ #if (__CUDA_ARCH__ >= 200) __launch_bounds__(GF1XX_THREADS_PER_BLOCK, 1) #elif (__CUDA_ARCH__ >= 120) __launch_bounds__(GT2XX_THREADS_PER_BLOCK, 1) #else __launch_bounds__(G8X_THREADS_PER_BLOCK, 1) #endif void kReduceToObcBornForcePrefactor_kernel( unsigned int fieldComponents, unsigned int outputBuffers, float* fieldIn1, float* fieldIn2, float* fieldOut ) { unsigned int pos = blockIdx.x * blockDim.x + threadIdx.x; // Reduce field while (pos < fieldComponents) { float totalField = 0.0f; float* pFt1 = fieldIn1 + pos; float* pFt2 = fieldIn2 + pos; float bornRadius = cSim.pBornRadii[pos]; float obcChain = cSim.pObcChain[pos]; unsigned int i = outputBuffers; while (i >= 4) { totalField += pFt1[0] + pFt1[fieldComponents] + pFt1[2*fieldComponents] + pFt1[3*fieldComponents]; totalField += pFt2[0] + pFt2[fieldComponents] + pFt2[2*fieldComponents] + pFt2[3*fieldComponents]; pFt1 += fieldComponents*4; pFt2 += fieldComponents*4; i -= 4; } if (i >= 2) { totalField += pFt1[0] + pFt1[fieldComponents]; totalField += pFt2[0] + pFt2[fieldComponents]; pFt1 += fieldComponents*2; pFt2 += fieldComponents*2; i -= 2; } if (i > 0) { totalField += pFt1[0]; totalField += pFt2[0]; } fieldOut[pos] = totalField*bornRadius*bornRadius*obcChain; pos += gridDim.x * blockDim.x; } } __global__ #if (__CUDA_ARCH__ >= 200) __launch_bounds__(GF1XX_THREADS_PER_BLOCK, 1) #elif (__CUDA_ARCH__ >= 120) __launch_bounds__(GT2XX_THREADS_PER_BLOCK, 1) #else __launch_bounds__(G8X_THREADS_PER_BLOCK, 1) #endif void kReduceToObcBornForcePrefactorAndSASA_kernel( unsigned int fieldComponents, unsigned int outputBuffers, float* fieldIn1, float* fieldIn2, float* fieldOut ) { unsigned int pos = blockIdx.x * blockDim.x + threadIdx.x; float energy = 0.0f; // Reduce field while (pos < fieldComponents) { float totalForce = 0.0f; float* pFt1 = fieldIn1 + pos; float* pFt2 = fieldIn2 + pos; float bornRadius = cSim.pBornRadii[pos]; float obcChain = cSim.pObcChain[pos]; float2 obcData = cSim.pObcData[pos]; unsigned int i = outputBuffers; while (i >= 4) { totalForce += pFt1[0] + pFt1[fieldComponents] + pFt1[2*fieldComponents] + pFt1[3*fieldComponents]; totalForce += pFt2[0] + pFt2[fieldComponents] + pFt2[2*fieldComponents] + pFt2[3*fieldComponents]; pFt1 += fieldComponents*4; pFt2 += fieldComponents*4; i -= 4; } if (i >= 2) { totalForce += pFt1[0] + pFt1[fieldComponents]; totalForce += pFt2[0] + pFt2[fieldComponents]; pFt1 += fieldComponents*2; pFt2 += fieldComponents*2; i -= 2; } if (i > 0) { totalForce += pFt1[0]; totalForce += pFt2[0]; } float r = (obcData.x + cSim.dielectricOffset + cSim.probeRadius); float ratio6 = ( (obcData.x + cSim.dielectricOffset) / bornRadius); ratio6 = ratio6*ratio6*ratio6; ratio6 = ratio6*ratio6; float saTerm = cSim.surfaceAreaFactor * r * r * ratio6; totalForce += saTerm / bornRadius; totalForce *= bornRadius * bornRadius * obcChain; fieldOut[pos] = totalForce; energy += saTerm; pos += gridDim.x * blockDim.x; } cSim.pEnergy[blockIdx.x * blockDim.x + threadIdx.x] += energy / -6.0f; } __global__ #if (__CUDA_ARCH__ >= 200) __launch_bounds__(GF1XX_THREADS_PER_BLOCK, 1) #elif (__CUDA_ARCH__ >= 120) __launch_bounds__(GT2XX_THREADS_PER_BLOCK, 1) #else __launch_bounds__(G8X_THREADS_PER_BLOCK, 1) #endif void kReduceToBornForcePrefactor_kernel( unsigned int fieldComponents, unsigned int outputBuffers, float* fieldIn1, float* fieldIn2, float* fieldOut ) { unsigned int pos = blockIdx.x * blockDim.x + threadIdx.x; // Reduce field while (pos < fieldComponents) { float totalField = 0.0f; float* pFt1 = fieldIn1 + pos; float* pFt2 = fieldIn2 + pos; //float bornRadius = cSim.pBornRadii[pos]; //float obcChain = cSim.pObcChain[pos]; unsigned int i = outputBuffers; while (i >= 4) { totalField += pFt1[0] + pFt1[fieldComponents] + pFt1[2*fieldComponents] + pFt1[3*fieldComponents]; totalField += pFt2[0] + pFt2[fieldComponents] + pFt2[2*fieldComponents] + pFt2[3*fieldComponents]; pFt1 += fieldComponents*4; pFt2 += fieldComponents*4; i -= 4; } if (i >= 2) { totalField += pFt1[0] + pFt1[fieldComponents]; totalField += pFt2[0] + pFt2[fieldComponents]; pFt1 += fieldComponents*2; pFt2 += fieldComponents*2; i -= 2; } if (i > 0) { totalField += pFt1[0]; totalField += pFt2[0]; } //fieldOut[pos] = totalField*bornRadius*bornRadius*obcChain; fieldOut[pos] = totalField; pos += gridDim.x * blockDim.x; } } __global__ #if (__CUDA_ARCH__ >= 200) __launch_bounds__(GF1XX_THREADS_PER_BLOCK, 1) #elif (__CUDA_ARCH__ >= 120) __launch_bounds__(GT2XX_THREADS_PER_BLOCK, 1) #else __launch_bounds__(G8X_THREADS_PER_BLOCK, 1) #endif void kReduceToBornForcePrefactorAndSASA_kernel( unsigned int fieldComponents, unsigned int outputBuffers, float* fieldIn1, float* fieldIn2, float* fieldOut ) { unsigned int pos = blockIdx.x * blockDim.x + threadIdx.x; float energy = 0.0f; // Reduce field while (pos < fieldComponents) { float totalForce = 0.0f; float* pFt1 = fieldIn1 + pos; float* pFt2 = fieldIn2 + pos; float bornRadius = cSim.pBornRadii[pos]; //float obcChain = cSim.pObcChain[pos]; float2 obcData = cSim.pObcData[pos]; unsigned int i = outputBuffers; while (i >= 4) { totalForce += pFt1[0] + pFt1[fieldComponents] + pFt1[2*fieldComponents] + pFt1[3*fieldComponents]; totalForce += pFt2[0] + pFt2[fieldComponents] + pFt2[2*fieldComponents] + pFt2[3*fieldComponents]; pFt1 += fieldComponents*4; pFt2 += fieldComponents*4; i -= 4; } if (i >= 2) { totalForce += pFt1[0] + pFt1[fieldComponents]; totalForce += pFt2[0] + pFt2[fieldComponents]; pFt1 += fieldComponents*2; pFt2 += fieldComponents*2; i -= 2; } if (i > 0) { totalForce += pFt1[0]; totalForce += pFt2[0]; } float r = (obcData.x + cSim.dielectricOffset + cSim.probeRadius); float ratio6 = ( (obcData.x + cSim.dielectricOffset) / bornRadius); ratio6 = ratio6*ratio6*ratio6; ratio6 = ratio6*ratio6; float saTerm = cSim.surfaceAreaFactor * r * r * ratio6; totalForce += saTerm / bornRadius; //totalForce *= bornRadius * bornRadius * obcChain; fieldOut[pos] = totalForce; energy += saTerm; pos += gridDim.x * blockDim.x; } cSim.pEnergy[blockIdx.x * blockDim.x + threadIdx.x] += energy / -6.0f; } static void kReduceToBornForcePrefactor( amoebaGpuContext amoebaGpu ) { gpuContext gpu = amoebaGpu->gpuContext; if( amoebaGpu->includeObcCavityTerm ){ kReduceToBornForcePrefactorAndSASA_kernel<<sim.nonbond_blocks, gpu->sim.bsf_reduce_threads_per_block>>>( gpu->sim.paddedNumberOfAtoms, gpu->sim.outputBuffers, amoebaGpu->psWorkArray_1_1->_pDevData, amoebaGpu->psWorkArray_1_2->_pDevData, amoebaGpu->gpuContext->psBornForce->_pDevData ); } else { kReduceToBornForcePrefactor_kernel<<sim.nonbond_blocks, gpu->sim.bsf_reduce_threads_per_block>>>( gpu->sim.paddedNumberOfAtoms, gpu->sim.outputBuffers, amoebaGpu->psWorkArray_1_1->_pDevData, amoebaGpu->psWorkArray_1_2->_pDevData, amoebaGpu->gpuContext->psBornForce->_pDevData ); } LAUNCHERROR("kReduceToBornForcePrefactor"); } /**--------------------------------------------------------------------------------------- Compute Amoeba electrostatic force & torque @param amoebaGpu amoebaGpu context @param gpu OpenMM gpu Cuda context --------------------------------------------------------------------------------------- */ void kCalculateAmoebaKirkwood( amoebaGpuContext amoebaGpu ) { // --------------------------------------------------------------------------------------- gpuContext gpu = amoebaGpu->gpuContext; // apparently debug array can take up nontrivial no. registers // on first pass, set threads/block and based on that setting the energy buffer array static unsigned int threadsPerBlock = 0; if( threadsPerBlock == 0 ){ unsigned int maxThreads; if (gpu->sm_version >= SM_20) //maxThreads = 384; maxThreads = 512; else if (gpu->sm_version >= SM_12) maxThreads = 128; else maxThreads = 64; threadsPerBlock = std::min(getThreadsPerBlock(amoebaGpu, sizeof(KirkwoodParticle), gpu->sharedMemoryPerBlock ), maxThreads); } kClearFields_1( amoebaGpu ); if (gpu->bOutputBufferPerWarp){ kCalculateAmoebaCudaKirkwoodN2ByWarpForces_kernel<<sim.nonbond_blocks, threadsPerBlock, sizeof(KirkwoodParticle)*threadsPerBlock>>>( gpu->psWorkUnit->_pDevData); } else { kCalculateAmoebaCudaKirkwoodN2Forces_kernel<<sim.nonbond_blocks, threadsPerBlock, sizeof(KirkwoodParticle)*threadsPerBlock>>>( gpu->psWorkUnit->_pDevData); } LAUNCHERROR("kCalculateAmoebaCudaKirkwoodN2Forces"); if( 0 ){ gpuContext gpu = amoebaGpu->gpuContext; std::vector fileId; fileId.push_back( 0 ); VectorOfDoubleVectors outputVector; //cudaLoadCudaFloat4Array( gpu->natoms, 3, gpu->psPosq4, outputVector, gpu->psAtomIndex->_pSysData, 1.0f ); //cudaLoadCudaFloatArray( gpu->natoms, 3, amoebaGpu->psLabFrameDipole, outputVector, gpu->psAtomIndex->_pSysData, 1.0f ); CUDAStream* temp = new CUDAStream(3*gpu->sim.paddedNumberOfAtoms, 1, "Temp1"); reduceAndCopyCUDAStreamFloat( amoebaGpu->psWorkArray_3_1, temp, 1.0 ); cudaLoadCudaFloatArray( gpu->natoms, 3, temp, outputVector, gpu->psAtomIndex->_pSysData, 1.0f ); cudaWriteVectorOfDoubleVectorsToFile( "Torq", fileId, outputVector ); delete temp; } kReduceToBornForcePrefactor( amoebaGpu ); // Tinker's Born1 && E-diff //kCalculateObcGbsaForces2( amoebaGpu->gpuContext ); kCalculateGrycukGbsaForces2( amoebaGpu ); kCalculateAmoebaKirkwoodEDiff( amoebaGpu ); // --------------------------------------------------------------------------------------- }