/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008 Stanford University and the Authors. * * Authors: Mark Friedrichs * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ /** * This tests the Brook harmonic angle bond force/energy */ #include #include "../../../tests/AssertionUtilities.h" #include "BrookPlatform.h" #include "OpenMMContext.h" #include "HarmonicAngleForce.h" #include "System.h" #include "LangevinIntegrator.h" #define PI_M 3.141592653589 using namespace OpenMM; using namespace std; const double TOL = 1e-5; void testBrookAngles( FILE* log ){ // --------------------------------------------------------------------------------------- static const std::string methodName = "testBrookAngles"; static const int debug = 1; int PrintOn = 0; int numberOfParticles = 4; double mass = 2.0; // --------------------------------------------------------------------------------------- PrintOn = log ? PrintOn : 0; if( PrintOn ){ (void) fprintf( log, "%s\n", methodName.c_str() ); (void) fflush( log ); } BrookPlatform platform( 32, "cal", log ); System system( numberOfParticles, 0 ); LangevinIntegrator integrator( 0, 0.1, 0.01 ); // int numParticles, int numBonds, int numAngles, int numPeriodicTorsions, int numRBTorsions HarmonicAngleForce* forceField = new HarmonicAngleForce(2); // int index, int atom1, int atom2, int atom3, double angle, double k forceField->setAngleParameters(0, 0, 1, 2, PI_M/3, 1.1); forceField->setAngleParameters(1, 1, 2, 3, PI_M/2, 1.2); system.addForce(forceField); OpenMMContext context(system, integrator, platform); vector positions(numberOfParticles); positions[0] = Vec3(0, 1, 0); positions[1] = Vec3(0, 0, 0); positions[2] = Vec3(1, 0, 0); positions[3] = Vec3(2, 1, 0); context.setPositions(positions); State state = context.getState( State::Forces | State::Energy ); const vector& forces = state.getForces(); if( PrintOn ){ (void) fprintf( log, "Angle bond forces\n"); for( int ii = 0; ii < numberOfParticles; ii++ ){ (void) fprintf( log, "%d [%.5e %.5e %.5e]\n", ii, forces[ii][0], forces[ii][1], forces[ii][2] ); } (void) fflush( log ); } double tolerance = 1.0e-03; double torque1 = 1.1*PI_M/6; double torque2 = 1.2*PI_M/4; ASSERT_EQUAL_VEC(Vec3(torque1, 0, 0), forces[0], tolerance); ASSERT_EQUAL_VEC(Vec3(-0.5*torque2, 0.5*torque2, 0), forces[3], tolerance); // reduced by sqrt(2) due to the bond length, another sqrt(2) due to the angle ASSERT_EQUAL_VEC(Vec3(forces[0][0]+forces[1][0]+forces[2][0]+forces[3][0], forces[0][1]+forces[1][1]+forces[2][1]+forces[3][1], forces[0][2]+forces[1][2]+forces[2][2]+forces[3][2]), Vec3(0, 0, 0), tolerance); ASSERT_EQUAL_TOL(0.5*1.1*(PI_M/6)*(PI_M/6) + 0.5*1.2*(PI_M/4)*(PI_M/4), state.getPotentialEnergy(), tolerance); if( PrintOn ){ (void) fprintf( log, "Angle bond forces ok tolerance=%.2e\n", tolerance ); (void) fflush( log ); } } int main( ){ // --------------------------------------------------------------------------------------- static const std::string methodName = "testBrookAngles"; FILE* log = stdout; // --------------------------------------------------------------------------------------- (void) fflush( stdout ); (void) fflush( stderr ); try { testBrookAngles( log ); } catch( const exception& e ){ (void) fprintf( log, "Exception %s %.s\n", methodName.c_str(), e.what() ); (void) fflush( log ); return 1; } (void) fprintf( log, "\n%s done\n", methodName.c_str() ); (void) fflush( log ); return 0; }