#ifndef OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_ #define OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_ /* -------------------------------------------------------------------------- * * OpenMMAmoeba * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2012 Stanford University and the Authors. * * Authors: Mark Friedrichs, Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/Force.h" #include "openmm/internal/windowsExport.h" #include namespace OpenMM { /** * This class implements the Amoeba out-of-plane bend interaction. * * To use it, create an OutOfPlaneBendForce object then call addOutOfPlaneBend() once for each outOfPlaneBend. After * an out-of-plane bend has been added, you can modify its force field parameters by calling setOutOfPlaneBendParameters(). */ class OPENMM_EXPORT AmoebaOutOfPlaneBendForce : public Force { public: /** * Create an AmoebaOutOfPlaneBendForce. */ AmoebaOutOfPlaneBendForce(); /** * Get the number of out-of-plane bend terms in the potential function */ int getNumOutOfPlaneBends() const { return outOfPlaneBends.size(); } /** * Set the global cubic term * * @param cubicK the cubic force constant for the angle */ void setAmoebaGlobalOutOfPlaneBendCubic(double cubicK); /** * Get the global cubic term * * @return global cubicK term */ double getAmoebaGlobalOutOfPlaneBendCubic(void) const; /** * Set the global cubic term * * @param quarticK the quartic force constant for the angle */ void setAmoebaGlobalOutOfPlaneBendQuartic(double quarticK); /** * Get the global quartic term * * @return global quartic term */ double getAmoebaGlobalOutOfPlaneBendQuartic(void) const; /** * Set the global pentic term * * @param penticK the pentic force constant for the angle */ void setAmoebaGlobalOutOfPlaneBendPentic(double penticK); /** * Get the global pentic term * * @return global penticK term */ double getAmoebaGlobalOutOfPlaneBendPentic(void) const; /** * Set the global sextic term * * @param sexticK the sextic force constant for the angle */ void setAmoebaGlobalOutOfPlaneBendSextic(double sexticK); /** * Get the global sextic term * * @return global sexticK term */ double getAmoebaGlobalOutOfPlaneBendSextic(void) const; /** * Add an out-of-plane bend term to the force field. * * @param particle1 the index of the first particle connected by the outOfPlaneBend * @param particle2 the index of the second particle connected by the outOfPlaneBend * @param particle3 the index of the third particle connected by the outOfPlaneBend * @param particle4 the index of the fourth particle connected by the outOfPlaneBend * @param k the force constant for the out-of-plane bend * @return the index of the out-of-plane bend that was added */ int addOutOfPlaneBend(int particle1, int particle2, int particle3, int particle4, double k); /** * Get the force field parameters for an out-of-plane bend term. * * @param index the index of the outOfPlaneBend for which to get parameters * @param particle1 the index of the first particle connected by the outOfPlaneBend * @param particle2 the index of the second particle connected by the outOfPlaneBend * @param particle3 the index of the third particle connected by the outOfPlaneBend * @param particle4 the index of the fourth particle connected by the outOfPlaneBend * @param k the force constant for the out-of-plane bend */ void getOutOfPlaneBendParameters(int index, int& particle1, int& particle2, int& particle3, int& particle4, double& k) const; /** * Set the force field parameters for an out-of-plane bend term. * * @param index the index of the outOfPlaneBend for which to set parameters * @param particle1 the index of the first particle connected by the outOfPlaneBend * @param particle2 the index of the second particle connected by the outOfPlaneBend * @param particle3 the index of the third particle connected by the outOfPlaneBend * @param particle4 the index of the fourth particle connected by the outOfPlaneBend * @param k the force constant for the out-of-plane bend */ void setOutOfPlaneBendParameters(int index, int particle1, int particle2, int particle3, int particle4, double k); protected: ForceImpl* createImpl(); double _globalCubicK, _globalQuarticK, _globalPenticK, _globalSexticK; private: class OutOfPlaneBendInfo; std::vector outOfPlaneBends; }; class AmoebaOutOfPlaneBendForce::OutOfPlaneBendInfo { public: int particle1, particle2, particle3, particle4; double k; OutOfPlaneBendInfo() { particle1 = particle2 = particle3 = particle4 = -1; k = 0.0; } OutOfPlaneBendInfo(int particle1, int particle2, int particle3, int particle4, double k) : particle1(particle1), particle2(particle2), particle3(particle3), particle4(particle4), k(k) { } }; } // namespace OpenMM #endif /*OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_*/