/* Portions copyright (c) 2006 Stanford University and Simbios. * Contributors: Pande Group * * Permission is hereby granted, free of charge, to any person obtaining * a copy of this software and associated documentation files (the * "Software"), to deal in the Software without restriction, including * without limitation the rights to use, copy, modify, merge, publish, * distribute, sublicense, and/or sell copies of the Software, and to * permit persons to whom the Software is furnished to do so, subject * to the following conditions: * * The above copyright notice and this permission notice shall be included * in all copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS * OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. * IN NO EVENT SHALL THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE * LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION * OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION * WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ #ifndef __ReferenceAngleBondIxn_H__ #define __ReferenceAngleBondIxn_H__ #include "ReferenceBondIxn.h" namespace OpenMM { class ReferenceAngleBondIxn : public ReferenceBondIxn { private: public: /**--------------------------------------------------------------------------------------- Constructor --------------------------------------------------------------------------------------- */ ReferenceAngleBondIxn( ); /**--------------------------------------------------------------------------------------- Destructor --------------------------------------------------------------------------------------- */ ~ReferenceAngleBondIxn( ); /**--------------------------------------------------------------------------------------- Get dEdR and energy term for angle bond @param cosine cosine of angle @param angleParameters angleParameters: angleParameters[0] = angle in radians angleParameters[1] = k (force constant) @param dEdR output dEdR @param energyTerm output energyTerm --------------------------------------------------------------------------------------- */ void getPrefactorsGivenAngleCosine( RealOpenMM cosine, RealOpenMM* angleParameters, RealOpenMM* dEdR, RealOpenMM* energyTerm ) const; /**--------------------------------------------------------------------------------------- Calculate Angle Bond ixn @param atomIndices two bond indices @param atomCoordinates atom coordinates @param parameters parameters: parameters[0] = ideal bond length parameters[1] = bond k (includes factor of 2) @param forces force array (forces added) @param totalEnergy if not null, the energy will be added to this --------------------------------------------------------------------------------------- */ void calculateBondIxn( int* atomIndices, std::vector& atomCoordinates, RealOpenMM* parameters, std::vector& forces, RealOpenMM* totalEnergy ) const; }; } // namespace OpenMM #endif // __ReferenceAngleBondIxn_H__