/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2010-2014 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/serialization/XmlSerializer.h" #include "tinyxml.h" using namespace OpenMM; using namespace std; void XmlSerializer::serialize(const SerializationNode& node, std::ostream& stream) { stream << "\n"; encodeNode(node, stream, 0); } void XmlSerializer::encodeNode(const SerializationNode& node, std::ostream& stream, int depth) { for (int i = 0; i < depth; i++) stream << '\t'; stream << '<' << node.getName(); const map& properties = node.getProperties(); for (map::const_iterator iter = properties.begin(); iter != properties.end(); ++iter) { string name, value; TiXmlBase::EncodeString(iter->first, &name); TiXmlBase::EncodeString(iter->second, &value); stream << ' ' << name << "=\"" << value << '\"'; } const vector& children = node.getChildren(); if (children.size() == 0) stream << "/>\n"; else { stream << ">\n"; for (int i = 0; i < (int) children.size(); i++) encodeNode(children[i], stream, depth+1); for (int i = 0; i < depth; i++) stream << '\t'; stream << "\n"; } } void* XmlSerializer::deserializeStream(std::istream& stream) { TiXmlDocument doc; stream >> doc; SerializationNode root; decodeNode(root, *doc.FirstChildElement()); const SerializationProxy& proxy = SerializationProxy::getProxy(root.getStringProperty("type")); return proxy.deserialize(root); } void XmlSerializer::decodeNode(SerializationNode& node, const TiXmlElement& element) { for (const TiXmlAttribute* attribute = element.FirstAttribute(); attribute != NULL; attribute = attribute->Next()) node.setStringProperty(attribute->NameTStr(), attribute->ValueStr()); for (const TiXmlElement* child = element.FirstChildElement(); child != NULL; child = child->NextSiblingElement()) { SerializationNode& childNode = node.createChildNode(child->ValueTStr()); decodeNode(childNode, *child); } }