#ifndef OPENMM_BROOK_VELOCITY_CENTER_OF_MASS_REMOVAL_H_ #define OPENMM_BROOK_VELOCITY_CENTER_OF_MASS_REMOVAL_H_ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2009 Stanford University and the Authors. * * Authors: Mark Friedrichs, Mike Houston * * Contributors: * * * * This program is free software: you can redistribute it and/or modify * * it under the terms of the GNU Lesser General Public License as published * * by the Free Software Foundation, either version 3 of the License, or * * (at your option) any later version. * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * * GNU Lesser General Public License for more details. * * * * You should have received a copy of the GNU Lesser General Public License * * along with this program. If not, see . * * -------------------------------------------------------------------------- */ #include #include #include "BrookStreamImpl.h" //#include "BrookFloatStreamInternal.h" #include "BrookPlatform.h" #include "BrookCommon.h" namespace OpenMM { /** * * Encapsulates removal of center of mass * */ class BrookVelocityCenterOfMassRemoval : public BrookCommon { public: /** * Constructor * */ BrookVelocityCenterOfMassRemoval( ); /** * Destructor * */ ~BrookVelocityCenterOfMassRemoval( ); /** * Get particle stream width * * @return particle stream width */ int getComParticleStreamWidth( void ) const; /** * Get particle stream height * * @return particle stream height */ int getComParticleStreamHeight( void ) const; /** * Get particle stream size * * @return particle stream size */ int getComParticleStreamSize( void ) const; /** * Remove velocity center-of-mass * * @param velocities particle velocities * * @return DefaultReturnValue * */ int removeVelocityCenterOfMass( BrookStreamImpl& velocityStream ); /** * Get velocity center-of-mass and kinetic energy (used for diagnostics) * * @param velocities particle velocities * @param velocityCom output velocity com * @param ke output kinetic energy * * @return DefaultReturnValue * */ int getVelocityCenterOfMass( BrookStreamImpl& vStream, BrookOpenMMFloat velocityCom[3], BrookOpenMMFloat* ke ); /* * Setup of parameters * * @param masses particle masses * @param platform Brook platform * * @return ErrorReturnValue value if error, else DefaultReturnValue * * */ int setup( const std::vector& masses, const Platform& platform ); /* * Get contents of object * * @param level of dump * * @return string containing contents * * */ std::string getContentsString( int level = 0 ) const; /** * Get inverse of total mass * * @return inverse of total mass * */ BrookOpenMMFloat getTotalInverseMass( void ) const; /** * Get inverse mass stream * * @return inverse mass stream * */ BrookFloatStreamInternal* getMassStream( void ) const; /** * Get work stream * * @return work stream * */ BrookFloatStreamInternal* getWorkStream( void ) const; /** * Get linear momentum stream * * @return linear momentum stream * */ BrookFloatStreamInternal* getLinearMomentumStream( void ) const; private: // streams indices enum BrookVelocityCenterOfMassRemovalStreams { MassStream, WorkStream, LinearMomentumStream, LastStreamIndex }; BrookOpenMMFloat _totalInverseMass; // Particle stream dimensions int _particleStreamWidth; int _particleStreamHeight; int _particleStreamSize; // internal streams BrookFloatStreamInternal* _streams[LastStreamIndex]; /* * Setup of stream dimensions * * @param particleStreamSize particle stream size * @param particleStreamWidth particle stream width * * @return ErrorReturnValue if error, else DefaultReturnValue * * */ int _initializeStreamSizes( int particleStreamSize, int particleStreamWidth ); /** * Initialize stream dimensions * * @param numberOfParticles number of particles * @param platform platform * * @return ErrorReturnValue if error, else DefaultReturnValue * */ int _initializeStreamSizes( int numberOfParticles, const Platform& platform ); /** * Initialize stream dimensions and streams * * @param platform platform * * @return nonzero value if error * */ int _initializeStreams( const Platform& platform ); /** * Set inverse masses * * @param masses particle masses * */ int _setMasses( const std::vector& masses ); }; } // namespace OpenMM #endif /* OPENMM_BROOK_VELOCITY_CENTER_OF_MASS_REMOVAL_H_ */