#ifndef OPENMM_BROOK_FLOAT_STREAM_INTERNAL_H_
#define OPENMM_BROOK_FLOAT_STREAM_INTERNAL_H_
/* -------------------------------------------------------------------------- *
* OpenMM *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Biological Structures at Stanford, funded under the NIH Roadmap for *
* Medical Research, grant U54 GM072970. See https://simtk.org. *
* *
* Portions copyright (c) 2009 Stanford University and the Authors. *
* Authors: Mark Friedrichs, Mike Houston *
* Contributors: *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU Lesser General Public License as published *
* by the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU Lesser General Public License for more details. *
* *
* You should have received a copy of the GNU Lesser General Public License *
* along with this program. If not, see . *
* -------------------------------------------------------------------------- */
#include "BrookPlatform.h"
#include "BrookStreamInternal.h"
#include "../../reference/src/SimTKUtilities/SimTKOpenMMRealType.h"
namespace OpenMM {
/**
* This is the implementation of Float and Double streams in the Brook Platform.
*/
class BrookFloatStreamInternal : public BrookStreamInternal {
public:
/**
* BrookFloatStreamInternal constructor
*
* @param name stream name
* @param size size of array
* @param streamWidth stream width
* @param type stream type (float, float2, ...)
* @param inputDefaultDangleValue default dangle value
*
*/
BrookFloatStreamInternal( const std::string& name, int size, int inputStreamWidth, BrookStreamInternal::DataType type, double defaultDangleValue = 0.0 );
/**
* BrookFloatStreamInternal destructor
*
*/
~BrookFloatStreamInternal( );
/**
* Load data from input array
*
* @param array a pointer to the start of the array. The array is assumed to have the same length as this stream,
* and to contain elements of the correct _data type for this stream. If the stream has a compound _data type, all
* the values should be packed into a single array: all the values for the first element, followed by all the values
* for the next element, etc.
*
* @throw exception if baseType not float or double
*
*/
void loadFromArray( const void* array );
/**
* Copy the contents of an array into this stream.
*
* @param array a pointer to the start of the array. The array is assumed to have the same length as this stream,
* and to contain elements of the correct data type for this stream. If the stream has a compound data type, all
* the values should be packed into a single array: all the values for the first element, followed by all the values
* for the next element, etc.
*/
void loadFromArray( const void* array, BrookStreamInternal::DataType baseType );
/**
* Save data to input array
*
* @param array a pointer to the start of the array. The array is assumed to have the same length as this stream,
* and to contain elements of the correct _data type for this stream. If the stream has a compound _data type, all
* the values should be packed into a single array: all the values for the first element, followed by all the values
* for the next element, etc.
*
* @throw exception if baseType not float or double
*
*/
void saveToArray( void* array );
/**
* Fill data w/ input value
*
* @param value to set array to
*
*
*/
void fillWithValue( void* value );
/**
* Get data array -- no read from board!
*
* @return data array
*/
void* getData( void );
/**
* Get data array
*
* @param readFromBoard if set, read values on board
*
* @return data array
*/
void* getData( int readFromBoard );
/**
* Get array of appropritate size for loading data
*
* @return data array -- user's responsibility to free
*/
void* getDataArray( void );
/**
* Get dangle value
*
* @return dangle value
*/
double getDangleValue( void ) const;
/*
* Get contents of object
*
*
* @param level level of dump
*
* @return string containing contents
*
* */
const std::string getContentsString( int level = 0 ) const;
/**
* Sum over stream dimensions
*
* @param stopIndex index to stop sum
* @param sum array of size=getWidth()
*
* @return DefaultReturnValue
*
* @throw exception if stopIndex is too large
*/
int sumByDimension( int stopIndex, double* sum );
/*
* Get stats
*
* @return statistics vector
*
* */
int getStatistics( std::vector>&, int maxScan );
private:
BrookOpenMMFloat _defaultDangleValue;
float* _data;
RealOpenMM* _realOpenMMData;
void _loadDanglingValues( void );
void _loadDanglingValues( float );
/*
* Print array to file
*
* @param log log file
*
* @return DefaultReturnValue
*
* */
int _bodyPrintToFile( FILE* log, int maxPrint );
};
} // namespace OpenMM
#endif /* OPENMM_BROOK_FLOAT_STREAM_INTERNAL_H_ */