#ifndef OPENMM_OPENMMCONTEXTIMPL_H_ #define OPENMM_OPENMMCONTEXTIMPL_H_ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "Kernel.h" #include "Platform.h" #include "Stream.h" #include #include namespace OpenMM { class ForceImpl; class Integrator; class OpenMMContext; class System; /** * This is the internal implementation of an OpenMMContext. */ class OpenMMContextImpl { public: /** * Create an OpenMMContextImpl for an OpenMMContext; */ OpenMMContextImpl(OpenMMContext& owner, System& system, Integrator& integrator, Platform* platform); ~OpenMMContextImpl(); /** * Get the OpenMMContext for which this is the implementation. */ OpenMMContext& getOwner() { return owner; } /** * Get System being simulated in this context. */ System& getSystem() { return system; } /** * Get Integrator being used to by this context. */ Integrator& getIntegrator() { return integrator; } /** * Get the Platform implementation being used for computations. */ Platform& getPlatform() { return *platform; } /** * Get the Stream containing the current position of each atom. */ Stream& getPositions() { return positions; } /** * Get the Stream containing the current velocity of each atom. */ Stream& getVelocities() { return velocities; } /** * Get the Stream containing the force on each atom that was calculated by * the most recent call to calcForces(). */ Stream& getForces() { return forces; } /** * Get the current time (in picoseconds). */ double getTime() const { return time; } /** * Set the current time (in picoseconds). */ void setTime(double t) { time = t; } /** * Get the value of an adjustable parameter. If there is no parameter with the specified name, this * throws an exception. * * @param name the name of the parameter to get */ double getParameter(std::string name); /** * Set the value of an adjustable parameter. If there is no parameter with the specified name, this * throws an exception. * * @param name the name of the parameter to set * @param value the value of the parameter */ void setParameter(std::string name, double value); /** * Recalculate all of the forces in the system. After calling this, use getForces() to retrieve * the forces that were calculated. */ void calcForces(); /** * Calculate the kinetic energy of the system (in kJ/mol). */ double calcKineticEnergy(); /** * Calculate the potential energy of the system (in kJ/mol). */ double calcPotentialEnergy(); /** * This should be called at the start of each time step. It calls updateContextState() on each * ForceImpl in the system, allowing them to modify the values of state variables. */ void updateContextState(); /** * Delete all ForceImpl objects that have been created and create new ones. */ void reinitialize(); private: friend class OpenMMContext; OpenMMContext& owner; System& system; Integrator& integrator; std::vector forceImpls; double time; std::map parameters; Platform* platform; Stream positions, velocities, forces; Kernel kineticEnergyKernel; }; } // namespace OpenMM #endif /*OPENMM_OPENMMCONTEXTIMPL_H_*/