Initial Amoeba

f7f79b04 · Mark Friedrichs · 5003591d · f7f79b04 · f7f79b04 · f7f79b04
Commit f7f79b04 authored Jul 22, 2010 by Mark Friedrichs
20 changed files
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaKirkwoodEDiff.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaKirkwoodEDiff.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaKirkwoodParticle.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaKirkwoodParticle.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedAndGkFields.cu
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedAndGkFields.cu
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedAndGkFields.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedAndGkFields.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedField.cu
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedField.cu
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedField.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedField.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedParticle.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaMutualInducedParticle.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaReduce.cu
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaReduce.cu
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaReduce.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaReduce.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaSASA.cu
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaSASA.cu
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaUtilities.cu
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaUtilities.cu
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaUtilities.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaUtilities.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaVdw14_7.cu
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaVdw14_7.cu
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaVdw14_7.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaVdw14_7.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaVdwParticle.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaVdwParticle.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaWcaDispersion.cu
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaWcaDispersion.cu
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaWcaDispersion.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaWcaDispersion.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaWcaDispersionParticle.h
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaCudaWcaDispersionParticle.h
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaLocalForces.cu
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaLocalForces.cu
--- a/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaLocalForces.cu1
+++ b/plugins/amoeba/platforms/cuda/src/kernels/kCalculateAmoebaLocalForces.cu1