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Commit f7c92bbd authored by Christopher Bruns's avatar Christopher Bruns
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Install directory now looks much more like actual OpenMM releases.

parent 1cb9e183
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Showing with 1058 additions and 26 deletions
CMakeLists.txt
View file @ f7c92bbd
...@@ -290,19 +290,26 @@ INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/src) ...@@ -290,19 +290,26 @@ INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/src)
ADD_LIBRARY(${SHARED_TARGET} SHARED ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES}) ADD_LIBRARY(${SHARED_TARGET} SHARED ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES})
SET_TARGET_PROPERTIES(${SHARED_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DOPENMM_VALIDATE_BUILDING_SHARED_LIBRARY") SET_TARGET_PROPERTIES(${SHARED_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DOPENMM_VALIDATE_BUILDING_SHARED_LIBRARY")
ADD_LIBRARY(${STATIC_TARGET} STATIC ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES}) SET(OPENMM_BUILD_STATIC_LIB OFF CACHE BOOL "Whether to build static OpenMM libraries")
SET_TARGET_PROPERTIES(${STATIC_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_USE_STATIC_LIBRARIES -DOPENMM_BUILDING_STATIC_LIBRARY -DLEPTON_USE_STATIC_LIBRARIES -DLEPTON_BUILDING_STATIC_LIBRARY -DOPENMMM_VALIDATE_BUILDING_STATIC_LIBRARY -DOPENMM_VALIDATE_BUILDING_STATIC_LIBRARY") IF(OPENMM_BUILD_STATIC_LIB)
ADD_LIBRARY(${STATIC_TARGET} STATIC ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES})
SET_TARGET_PROPERTIES(${STATIC_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_USE_STATIC_LIBRARIES -DOPENMM_BUILDING_STATIC_LIBRARY -DLEPTON_USE_STATIC_LIBRARIES -DLEPTON_BUILDING_STATIC_LIBRARY -DOPENMMM_VALIDATE_BUILDING_STATIC_LIBRARY -DOPENMM_VALIDATE_BUILDING_STATIC_LIBRARY")
ENDIF(OPENMM_BUILD_STATIC_LIB)
IF(OPENMM_BUILD_API_WRAPPERS) IF(OPENMM_BUILD_API_WRAPPERS)
ADD_DEPENDENCIES(${SHARED_TARGET} ApiWrappers) ADD_DEPENDENCIES(${SHARED_TARGET} ApiWrappers)
ADD_DEPENDENCIES(${STATIC_TARGET} ApiWrappers) IF(OPENMM_BUILD_STATIC_LIB)
ADD_DEPENDENCIES(${STATIC_TARGET} ApiWrappers)
ENDIF(OPENMM_BUILD_STATIC_LIB)
ENDIF(OPENMM_BUILD_API_WRAPPERS) ENDIF(OPENMM_BUILD_API_WRAPPERS)
# On Linux need to link to libdl # On Linux need to link to libdl
FIND_LIBRARY(DL_LIBRARY dl) FIND_LIBRARY(DL_LIBRARY dl)
IF(DL_LIBRARY) IF(DL_LIBRARY)
TARGET_LINK_LIBRARIES(${SHARED_TARGET} ${DL_LIBRARY}) TARGET_LINK_LIBRARIES(${SHARED_TARGET} ${DL_LIBRARY})
TARGET_LINK_LIBRARIES(${STATIC_TARGET} ${DL_LIBRARY}) IF(OPENMM_BUILD_STATIC_LIB)
TARGET_LINK_LIBRARIES(${STATIC_TARGET} ${DL_LIBRARY})
ENDIF(OPENMM_BUILD_STATIC_LIB)
ENDIF(DL_LIBRARY) ENDIF(DL_LIBRARY)
IF(WIN32) IF(WIN32)
MARK_AS_ADVANCED(DL_LIBRARY) MARK_AS_ADVANCED(DL_LIBRARY)
...@@ -391,7 +398,9 @@ IF(OPENMM_BUILD_FREE_ENERGY_PLUGIN) ...@@ -391,7 +398,9 @@ IF(OPENMM_BUILD_FREE_ENERGY_PLUGIN)
ENDIF(OPENMM_BUILD_FREE_ENERGY_PLUGIN) ENDIF(OPENMM_BUILD_FREE_ENERGY_PLUGIN)
INSTALL_TARGETS(/lib RUNTIME_DIRECTORY /lib ${SHARED_TARGET}) INSTALL_TARGETS(/lib RUNTIME_DIRECTORY /lib ${SHARED_TARGET})
INSTALL_TARGETS(/lib RUNTIME_DIRECTORY /lib ${STATIC_TARGET}) IF(OPENMM_BUILD_STATIC_LIB)
INSTALL_TARGETS(/lib RUNTIME_DIRECTORY /lib ${STATIC_TARGET})
ENDIF(OPENMM_BUILD_STATIC_LIB)
FILE(GLOB CORE_HEADERS include/*.h */include/*.h) FILE(GLOB CORE_HEADERS include/*.h */include/*.h)
FILE(GLOB TOP_HEADERS include/openmm/*.h */include/openmm/*.h) FILE(GLOB TOP_HEADERS include/openmm/*.h */include/openmm/*.h)
FILE(GLOB INTERNAL_HEADERS include/openmm/internal/*.h */include/openmm/internal/*.h ) FILE(GLOB INTERNAL_HEADERS include/openmm/internal/*.h */include/openmm/internal/*.h )
...@@ -426,9 +435,54 @@ ELSE (EXECUTABLE_OUTPUT_PATH) ...@@ -426,9 +435,54 @@ ELSE (EXECUTABLE_OUTPUT_PATH)
ENDIF (EXECUTABLE_OUTPUT_PATH) ENDIF (EXECUTABLE_OUTPUT_PATH)
# Build and install documentation # Build and install documentation
INCLUDE(cmake_modules/ApiDoxygen.cmake)
find_package(Doxygen QUIET)
mark_as_advanced(CLEAR DOXYGEN_EXECUTABLE)
IF(DOXYGEN_EXECUTABLE)
SET(DOXY_CONFIG "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile")
CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile.in
${DOXY_CONFIG}
@ONLY )
FILE(GLOB_RECURSE OPENMM_INCLUDES "openmm/include/*.h")
FILE(GLOB_RECURSE OLLA_INCLUDES "olla/include/*.h")
ADD_CUSTOM_COMMAND(
OUTPUT "${CMAKE_CURRENT_BINARY_DIR}/html/index.html"
COMMAND ${DOXYGEN_EXECUTABLE} ${DOXY_CONFIG}
DEPENDS ${OPENMM_INCLUDES} ${OLLA_INCLUDES}
WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}"
COMMENT "Generating API documentation using Doxygen")
ADD_CUSTOM_TARGET(DoxygenApiDocs
DEPENDS "${CMAKE_CURRENT_BINARY_DIR}/html/index.html"
COMMENT "Generating API documentation using Doxygen"
SOURCES
"${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile.in"
${OPENMM_INCLUDES}
${OLLA_INCLUDES}
)
FILE(MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/html/")
INSTALL(DIRECTORY "${PROJECT_BINARY_DIR}/html/"
DESTINATION "docs/api/")
INSTALL(FILES "docs/API Reference.html"
DESTINATION "docs/")
set(OPENMM_GENERATE_API_DOCS OFF CACHE BOOL "Whether to create API documentation using Doxygen")
if(OPENMM_GENERATE_API_DOCS)
ADD_CUSTOM_TARGET(GenerateDoxygenApiDocs ALL
DEPENDS "${CMAKE_CURRENT_BINARY_DIR}/html/index.html"
COMMENT "Generating API documentation using Doxygen"
SOURCES
"${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile.in"
${OPENMM_INCLUDES}
${OLLA_INCLUDES}
)
endif(OPENMM_GENERATE_API_DOCS)
ENDIF(DOXYGEN_EXECUTABLE)
install(FILES docs/UsersGuide/OpenMMUsersGuide.pdf install(FILES docs/UsersGuide/OpenMMUsersGuide.pdf
DESTINATION docs) DESTINATION docs/)
FILE(GLOB LICENSE_FILES "docs/licenses/*.txt")
install(FILES ${LICENSE_FILES}
DESTINATION licenses/)
ADD_SUBDIRECTORY(tests) ADD_SUBDIRECTORY(tests)
ADD_SUBDIRECTORY(examples) ADD_SUBDIRECTORY(examples)
......
cmake_modules/ApiDoxygen.cmake
View file @ f7c92bbd
INCLUDE(FindDoxygen) find_package(Doxygen)
IF(DOXYGEN_EXECUTABLE-NOTFOUND) set(OPENMM_GENERATE_API_DOCS OFF CACHE BOOL "Whether to create API documentation using Doxygen")
ELSE(DOXYGEN_EXECUTABLE-NOTFOUND) IF(DOXYGEN_FOUND)
SET(DOXY_CONFIG "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile") SET(DOXY_CONFIG "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile")
CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.in CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile.in
${DOXY_CONFIG} ${DOXY_CONFIG}
@ONLY ) @ONLY )
ADD_CUSTOM_TARGET(DoxygenApiDocs ${DOXYGEN_EXECUTABLE} ${DOXY_CONFIG}) ADD_CUSTOM_COMMAND(
OUTPUT "${CMAKE_CURRENT_BINARY_DIR}/html/index.html"
COMMAND ${DOXYGEN_EXECUTABLE} ${DOXY_CONFIG}
WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}"
COMMENT "Generating API documentation using Doxygen"
SOURCES "${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile.in")
ADD_CUSTOM_TARGET(DoxygenApiDocs
COMMAND ${DOXYGEN_EXECUTABLE} ${DOXY_CONFIG}
WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}"
COMMENT "Generating API documentation using Doxygen"
SOURCES "${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile.in")
FILE(MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/html/") FILE(MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/html/")
INSTALL(DIRECTORY "${PROJECT_BINARY_DIR}/html/"
DESTINATION "doc/api/" IF(OPENMM_GENERATE_API_DOCS)
) INSTALL(DIRECTORY "${PROJECT_BINARY_DIR}/html/"
ENDIF(DOXYGEN_EXECUTABLE-NOTFOUND) DESTINATION "docs/api/")
ENDIF(OPENMM_GENERATE_API_DOCS)
ELSE(DOXYGEN_FOUND)
ENDIF(DOXYGEN_FOUND)
docs/API Reference.html 0 → 100644
View file @ f7c92bbd
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<html>
<head>
<meta http-equiv="REFRESH" content="0;url=api/index.html"></HEAD>
<BODY>
</BODY>
</HTML>
\ No newline at end of file
docs/licenses/GPL.txt 0 → 100644
View file @ f7c92bbd
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You may not impose any further restrictions on the exercise of the
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A contributor's "essential patent claims" are all patent claims
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Nothing in this License shall be construed as excluding or limiting
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to collect a royalty for further conveying from those to whom you convey
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Foundation. If the Program does not specify a version number of the
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If the Program specifies that a proxy can decide which future
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15. Disclaimer of Warranty.
THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
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WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
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DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
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EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
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17. Interpretation of Sections 15 and 16.
If the disclaimer of warranty and limitation of liability provided
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Program, unless a warranty or assumption of liability accompanies a
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END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
state the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) <year> <name of author>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Also add information on how to contact you by electronic and paper mail.
If the program does terminal interaction, make it output a short
notice like this when it starts in an interactive mode:
<program> Copyright (C) <year> <name of author>
This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, your program's commands
might be different; for a GUI interface, you would use an "about box".
You should also get your employer (if you work as a programmer) or school,
if any, to sign a "copyright disclaimer" for the program, if necessary.
For more information on this, and how to apply and follow the GNU GPL, see
<http://www.gnu.org/licenses/>.
The GNU General Public License does not permit incorporating your program
into proprietary programs. If your program is a subroutine library, you
may consider it more useful to permit linking proprietary applications with
the library. If this is what you want to do, use the GNU Lesser General
Public License instead of this License. But first, please read
<http://www.gnu.org/philosophy/why-not-lgpl.html>.
docs/licenses/LGPL.txt 0 → 100644
View file @ f7c92bbd
GNU LESSER GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
This version of the GNU Lesser General Public License incorporates
the terms and conditions of version 3 of the GNU General Public
License, supplemented by the additional permissions listed below.
0. Additional Definitions.
As used herein, "this License" refers to version 3 of the GNU Lesser
General Public License, and the "GNU GPL" refers to version 3 of the GNU
General Public License.
"The Library" refers to a covered work governed by this License,
other than an Application or a Combined Work as defined below.
An "Application" is any work that makes use of an interface provided
by the Library, but which is not otherwise based on the Library.
Defining a subclass of a class defined by the Library is deemed a mode
of using an interface provided by the Library.
A "Combined Work" is a work produced by combining or linking an
Application with the Library. The particular version of the Library
with which the Combined Work was made is also called the "Linked
Version".
The "Minimal Corresponding Source" for a Combined Work means the
Corresponding Source for the Combined Work, excluding any source code
for portions of the Combined Work that, considered in isolation, are
based on the Application, and not on the Linked Version.
The "Corresponding Application Code" for a Combined Work means the
object code and/or source code for the Application, including any data
and utility programs needed for reproducing the Combined Work from the
Application, but excluding the System Libraries of the Combined Work.
1. Exception to Section 3 of the GNU GPL.
You may convey a covered work under sections 3 and 4 of this License
without being bound by section 3 of the GNU GPL.
2. Conveying Modified Versions.
If you modify a copy of the Library, and, in your modifications, a
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function or data, the facility still operates, and performs
whatever part of its purpose remains meaningful, or
b) under the GNU GPL, with none of the additional permissions of
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The object code form of an Application may incorporate material from
a header file that is part of the Library. You may convey such object
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(ten or fewer lines in length), you do both of the following:
a) Give prominent notice with each copy of the object code that the
Library is used in it and that the Library and its use are
covered by this License.
b) Accompany the object code with a copy of the GNU GPL and this license
document.
4. Combined Works.
You may convey a Combined Work under terms of your choice that,
taken together, effectively do not restrict modification of the
portions of the Library contained in the Combined Work and reverse
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the following:
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b) Accompany the Combined Work with a copy of the GNU GPL and this license
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c) For a Combined Work that displays copyright notices during
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these notices, as well as a reference directing the user to the
copies of the GNU GPL and this license document.
d) Do one of the following:
0) Convey the Minimal Corresponding Source under the terms of this
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Corresponding Source.
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for conveying Corresponding Source.)
5. Combined Libraries.
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Library side by side in a single library together with other library
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choice, if you do both of the following:
a) Accompany the combined library with a copy of the same work based
on the Library, uncombined with any other library facilities,
conveyed under the terms of this License.
b) Give prominent notice with the combined library that part of it
is a work based on the Library, and explaining where to find the
accompanying uncombined form of the same work.
6. Revised Versions of the GNU Lesser General Public License.
The Free Software Foundation may publish revised and/or new versions
of the GNU Lesser General Public License from time to time. Such new
versions will be similar in spirit to the present version, but may
differ in detail to address new problems or concerns.
Each version is given a distinguishing version number. If the
Library as you received it specifies that a certain numbered version
of the GNU Lesser General Public License "or any later version"
applies to it, you have the option of following the terms and
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published by the Free Software Foundation. If the Library as you
received it does not specify a version number of the GNU Lesser
General Public License, you may choose any version of the GNU Lesser
General Public License ever published by the Free Software Foundation.
If the Library as you received it specifies that a proxy can decide
whether future versions of the GNU Lesser General Public License shall
apply, that proxy's public statement of acceptance of any version is
permanent authorization for you to choose that version for the
Library.
docs/licenses/Licenses.txt 0 → 100644
View file @ f7c92bbd
OpenMM was developed by Simbios, the NIH National Center for Physics-Based
Simulation of Biological Structures at Stanford, funded under the NIH Roadmap
for Medical Research, grant U54 GM072970. See https://simtk.org.
Portions copyright © 2008-2009 Stanford University and the Authors.
There are several licenses which cover different parts of OpenMM as described
below.
1. API and Reference Platform
The OpenMM API and the Reference Platform may be used under the terms of the
MIT License:
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject
to the following conditions:
The above copyright notice and this permission notice shall be included
in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE
LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
2. CUDA and OpenCL Platforms
The CUDA Platform and OpenCL Platform may be used under the terms of the GNU
Lesser General Public License. A copy of this license may be found in the
accompanying file "LGPL.txt". It in turn incorporates the terms of the GNU
General Public License, which may be found in the accompanying file "GPL.txt".
3. SIMD-oriented Fast Mersenne Twister (SFMT)
OpenMM uses the SFMT library which is copyright 2006-2007 Mutsuo Saito, Makoto
Matsumoto and Hiroshima University. It may be used under the following terms:
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following
disclaimer in the documentation and/or other materials provided
with the distribution.
* Neither the name of the Hiroshima University nor the names of
its contributors may be used to endorse or promote products
derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
4. Hilbert Curve
OpenMM uses an implementation of Hilbert curves which is copyright 1998-2000
Rice University. It may be used under the following terms:
This software is copyrighted by Rice University. It may be freely copied,
modified, and redistributed, provided that the copyright notice is
preserved on all copies.
There is no warranty or other guarantee of fitness for this software,
it is provided solely "as is". Bug reports or fixes may be sent
to the author, who may or may not act on them as he desires.
You may include this software in a program or other software product,
but must display the notice:
Hilbert Curve implementation copyright 1998, Rice University
in any place where the end-user would see your own copyright.
If you modify this software, you should include a notice giving the
name of the person performing the modification, the date of modification,
and the reason for such modification.
5. GPU-BBSort
The CUDA platform uses the GPU-BBSort library written by Chen Shifu. It
includes the following license statement:
The code is distributed under BSD license, you are allowed to use, modify
or sell this code, but a statement is required if you used this code any where.
\ No newline at end of file
examples/CMakeLists.txt
View file @ f7c92bbd
...@@ -22,8 +22,10 @@ SET(C_EXAMPLES HelloArgonInC HelloSodiumChlorideInC) ...@@ -22,8 +22,10 @@ SET(C_EXAMPLES HelloArgonInC HelloSodiumChlorideInC)
SET(F_EXAMPLES HelloArgonInFortran HelloSodiumChlorideInFortran) SET(F_EXAMPLES HelloArgonInFortran HelloSodiumChlorideInFortran)
SET(BUILD_TESTING_SHARED 1) SET(BUILD_TESTING_SHARED 1)
SET(BUILD_TESTING_STATIC 1) SET(BUILD_TESTING_STATIC OFF)
IF(OPENMM_BUILD_STATIC_LIB)
SET(BUILD_TESTING_STATIC ON)
ENDIF(OPENMM_BUILD_STATIC_LIB)
FOREACH(EX_ROOT ${CPP_EXAMPLES}) FOREACH(EX_ROOT ${CPP_EXAMPLES})
IF (BUILD_TESTING_SHARED) IF (BUILD_TESTING_SHARED)
......
plugins/freeEnergy/CMakeLists.txt
View file @ f7c92bbd
...@@ -127,8 +127,10 @@ INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/src) ...@@ -127,8 +127,10 @@ INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/src)
ADD_LIBRARY(${SHARED_FREE_ENERGY_TARGET} SHARED ${SOURCE_FREE_ENERGY_FILES} ${SOURCE_FREE_ENERGY_INCLUDE_FILES} ${API_FREE_ENERGY_ABS_INCLUDE_FILES}) ADD_LIBRARY(${SHARED_FREE_ENERGY_TARGET} SHARED ${SOURCE_FREE_ENERGY_FILES} ${SOURCE_FREE_ENERGY_INCLUDE_FILES} ${API_FREE_ENERGY_ABS_INCLUDE_FILES})
SET_TARGET_PROPERTIES(${SHARED_FREE_ENERGY_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY") SET_TARGET_PROPERTIES(${SHARED_FREE_ENERGY_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY")
ADD_LIBRARY(${STATIC_FREE_ENERGY_TARGET} STATIC ${SOURCE_FREE_ENERGY_FILES} ${SOURCE_FREE_ENERGY_INCLUDE_FILES} ${API_FREE_ENERGY_ABS_INCLUDE_FILES}) IF(OPENMM_BUILD_STATIC_LIB)
SET_TARGET_PROPERTIES(${STATIC_FREE_ENERGY_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_USE_STATIC_LIBRARIES -DOPENMM_BUILDING_STATIC_LIBRARY -DLEPTON_USE_STATIC_LIBRARIES -DLEPTON_BUILDING_STATIC_LIBRARY") ADD_LIBRARY(${STATIC_FREE_ENERGY_TARGET} STATIC ${SOURCE_FREE_ENERGY_FILES} ${SOURCE_FREE_ENERGY_INCLUDE_FILES} ${API_FREE_ENERGY_ABS_INCLUDE_FILES})
SET_TARGET_PROPERTIES(${STATIC_FREE_ENERGY_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_USE_STATIC_LIBRARIES -DOPENMM_BUILDING_STATIC_LIBRARY -DLEPTON_USE_STATIC_LIBRARIES -DLEPTON_BUILDING_STATIC_LIBRARY")
ENDIF(OPENMM_BUILD_STATIC_LIB)
#IF(OPENMM_BUILD_API_FREE_ENERGY_WRAPPERS) #IF(OPENMM_BUILD_API_FREE_ENERGY_WRAPPERS)
# ADD_DEPENDENCIES(${SHARED_FREE_ENERGY_TARGET} ApiWrappers) # ADD_DEPENDENCIES(${SHARED_FREE_ENERGY_TARGET} ApiWrappers)
...@@ -139,7 +141,9 @@ SET_TARGET_PROPERTIES(${STATIC_FREE_ENERGY_TARGET} PROPERTIES COMPILE_FLAGS "-DO ...@@ -139,7 +141,9 @@ SET_TARGET_PROPERTIES(${STATIC_FREE_ENERGY_TARGET} PROPERTIES COMPILE_FLAGS "-DO
FIND_LIBRARY(DL_LIBRARY dl) FIND_LIBRARY(DL_LIBRARY dl)
IF(DL_LIBRARY) IF(DL_LIBRARY)
TARGET_LINK_LIBRARIES(${SHARED_FREE_ENERGY_TARGET} ${DL_LIBRARY}) TARGET_LINK_LIBRARIES(${SHARED_FREE_ENERGY_TARGET} ${DL_LIBRARY})
TARGET_LINK_LIBRARIES(${STATIC_FREE_ENERGY_TARGET} ${DL_LIBRARY}) IF(OPENMM_BUILD_STATIC_LIB)
TARGET_LINK_LIBRARIES(${STATIC_FREE_ENERGY_TARGET} ${DL_LIBRARY})
ENDIF(OPENMM_BUILD_STATIC_LIB)
ENDIF(DL_LIBRARY) ENDIF(DL_LIBRARY)
SET( OpenMMLib OpenMM ) SET( OpenMMLib OpenMM )
...@@ -148,7 +152,9 @@ IF (UNIX AND CMAKE_BUILD_TYPE MATCHES Debug) ...@@ -148,7 +152,9 @@ IF (UNIX AND CMAKE_BUILD_TYPE MATCHES Debug)
SET(OpenMMLib ${OpenMMLib}_d) SET(OpenMMLib ${OpenMMLib}_d)
ENDIF (UNIX AND CMAKE_BUILD_TYPE MATCHES Debug) ENDIF (UNIX AND CMAKE_BUILD_TYPE MATCHES Debug)
TARGET_LINK_LIBRARIES( ${SHARED_FREE_ENERGY_TARGET} ${SHARED_TARGET} ) TARGET_LINK_LIBRARIES( ${SHARED_FREE_ENERGY_TARGET} ${SHARED_TARGET} )
TARGET_LINK_LIBRARIES( ${STATIC_FREE_ENERGY_TARGET} ${STATIC_TARGET} ) IF(OPENMM_BUILD_STATIC_LIB)
TARGET_LINK_LIBRARIES( ${STATIC_FREE_ENERGY_TARGET} ${STATIC_TARGET} )
ENDIF(OPENMM_BUILD_STATIC_LIB)
ADD_SUBDIRECTORY(platforms/reference/tests) ADD_SUBDIRECTORY(platforms/reference/tests)
...@@ -178,8 +184,10 @@ ENDIF(OPENMM_BUILD_FREE_ENERGY_CUDA_LIB) ...@@ -178,8 +184,10 @@ ENDIF(OPENMM_BUILD_FREE_ENERGY_CUDA_LIB)
# ADD_SUBDIRECTORY(platforms/opencl) # ADD_SUBDIRECTORY(platforms/opencl)
#ENDIF(OPENMM_BUILD_OPENCL_LIB) #ENDIF(OPENMM_BUILD_OPENCL_LIB)
INSTALL_TARGETS(/lib RUNTIME_DIRECTORY /lib ${SHARED_FREE_ENERGY_TARGET}) INSTALL_TARGETS(/lib RUNTIME_DIRECTORY /lib/plugins ${SHARED_FREE_ENERGY_TARGET})
INSTALL_TARGETS(/lib RUNTIME_DIRECTORY /lib ${STATIC_FREE_ENERGY_TARGET}) IF(OPENMM_BUILD_STATIC_LIB)
INSTALL_TARGETS(/lib RUNTIME_DIRECTORY /lib/plugins ${STATIC_FREE_ENERGY_TARGET})
ENDIF(OPENMM_BUILD_STATIC_LIB)
FILE(GLOB CORE_HEADERS include/*.h */include/*.h) FILE(GLOB CORE_HEADERS include/*.h */include/*.h)
FILE(GLOB TOP_HEADERS include/openmm/*.h */include/openmm/*.h) FILE(GLOB TOP_HEADERS include/openmm/*.h */include/openmm/*.h)
FILE(GLOB INTERNAL_HEADERS include/openmm/internal/*.h */include/openmm/internal/*.h ) FILE(GLOB INTERNAL_HEADERS include/openmm/internal/*.h */include/openmm/internal/*.h )
......
plugins/freeEnergy/platforms/cuda/CMakeLists.txt
View file @ f7c92bbd
...@@ -140,4 +140,6 @@ INCLUDE_DIRECTORIES(${CMAKE_CURRENT_SOURCE_DIR}/src) ...@@ -140,4 +140,6 @@ INCLUDE_DIRECTORIES(${CMAKE_CURRENT_SOURCE_DIR}/src)
# SET(FINDCUDA_DIR ${CMAKE_CURRENT_SOURCE_DIR}/cuda-cmake) # SET(FINDCUDA_DIR ${CMAKE_CURRENT_SOURCE_DIR}/cuda-cmake)
SUBDIRS (sharedTarget staticTarget) # SUBDIRS (sharedTarget staticTarget)
SUBDIRS (sharedTarget)
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