Check in makefile for examples (not functional yet).

examples/Makefile

+# Uncomment DEBUG to use OpenMM libraries instead of release libraries
+# DEBUG=_d
+
+# Default install directory
+#
+# Linux
+# CFLAGS = -g -m32
+#
+# Mac
+# CFLAGS = -g -m32 -bind_at_load
+
+# Check whether this is the right capitalization for your install directory.
+OpenMM_INSTALL_DIR=/usr/local/OpenMM
+CFLAGS = -g 
+
+LIB_DIR=$(OpenMM_INSTALL_DIR)/lib
+INCLUDE_DIR=$(OpenMM_INSTALL_DIR)/include
+LIBS= -lOpenMM$(DEBUG)
+
+ALL_CPP_EXAMPLES = HelloArgon HelloSodiumChloride HelloEthane HelloWaterBox
+ALL_C_EXAMPLES   = HelloArgonInC HelloSodiumChlorideInC
+ALL_F95_EXAMPLES = HelloArgonInFortran HelloSodiumChlorideInFortran
+
+default: HelloArgon
+
+all : $(ALL_PROGS)
+
+# Treat all .cpp source files the same way
+.cpp : 
+	g++ $(CFLAGS) $< -I$(INCLUDE_DIR) -L$(LIB_DIR) $(LIBS) -o $*
+
+.c : OpenMM_CWrapper
+	g++ $(CFLAGS) $< OpenMM_CWrapper.o -L$(LIB_DIR) $(LIBS) -o $*
+
+OpenMM_CWrapper: OpenMM_CWrapper.cpp
+	g++ -c $(CFLAGS) $< -I$(INCLUDE_DIR) -o OpenMM_CWrapper.o
+
+clean : 
+	rm $(ALL_PROGS)
+