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tsoc
openmm
Commits
edfcdec3
Commit
edfcdec3
authored
Feb 07, 2017
by
Peter Eastman
Browse files
Bug fixes
parent
8647eaad
Changes
2
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2 changed files
with
7 additions
and
3 deletions
+7
-3
platforms/cuda/src/CudaKernels.cpp
platforms/cuda/src/CudaKernels.cpp
+6
-2
platforms/cuda/src/kernels/pme.cu
platforms/cuda/src/kernels/pme.cu
+1
-1
No files found.
platforms/cuda/src/CudaKernels.cpp
View file @
edfcdec3
...
...
@@ -1623,6 +1623,8 @@ CudaCalcNonbondedForceKernel::~CudaCalcNonbondedForceKernel() {
delete
sort
;
if
(
fft
!=
NULL
)
delete
fft
;
if
(
dispersionFft
!=
NULL
)
delete
dispersionFft
;
if
(
pmeio
!=
NULL
)
delete
pmeio
;
if
(
hasInitializedFFT
)
{
...
...
@@ -1915,6 +1917,8 @@ void CudaCalcNonbondedForceKernel::initialize(const System& system, const Nonbon
if
(
useCudaFFT
)
{
cufftSetStream
(
fftForward
,
pmeStream
);
cufftSetStream
(
fftBackward
,
pmeStream
);
cufftSetStream
(
dispersionFftForward
,
pmeStream
);
cufftSetStream
(
dispersionFftBackward
,
pmeStream
);
}
CHECK_RESULT
(
cuEventCreate
(
&
pmeSyncEvent
,
CU_EVENT_DISABLE_TIMING
),
"Error creating event for NonbondedForce"
);
int
recipForceGroup
=
force
.
getReciprocalSpaceForceGroup
();
...
...
@@ -2174,7 +2178,7 @@ double CudaCalcNonbondedForceKernel::execute(ContextImpl& context, bool includeF
cufftExecR2C
(
dispersionFftForward
,
(
float
*
)
directPmeGrid
->
getDevicePointer
(),
(
float2
*
)
reciprocalPmeGrid
->
getDevicePointer
());
}
else
{
f
ft->execFFT(*directPmeGrid, *reciprocalPmeGrid, true);
dispersionF
ft
->
execFFT
(
*
directPmeGrid
,
*
reciprocalPmeGrid
,
true
);
}
if
(
includeEnergy
)
{
...
...
@@ -2196,7 +2200,7 @@ double CudaCalcNonbondedForceKernel::execute(ContextImpl& context, bool includeF
cufftExecC2R
(
dispersionFftBackward
,
(
float2
*
)
reciprocalPmeGrid
->
getDevicePointer
(),
(
float
*
)
directPmeGrid
->
getDevicePointer
());
}
else
{
f
ft->execFFT(*reciprocalPmeGrid, *directPmeGrid, false);
dispersionF
ft
->
execFFT
(
*
reciprocalPmeGrid
,
*
directPmeGrid
,
false
);
}
void
*
interpolateArgs
[]
=
{
&
cu
.
getPosq
().
getDevicePointer
(),
&
cu
.
getForce
().
getDevicePointer
(),
&
directPmeGrid
->
getDevicePointer
(),
cu
.
getPeriodicBoxSizePointer
(),
...
...
platforms/cuda/src/kernels/pme.cu
View file @
edfcdec3
...
...
@@ -238,7 +238,7 @@ gridEvaluateEnergy(real2* __restrict__ halfcomplex_pmeGrid, mixed* __restrict__
#endif
energy
+=
eterm
*
(
grid
.
x
*
grid
.
x
+
grid
.
y
*
grid
.
y
);
}
#ifdef
USE_PME_STREAM
#if
def
ined(
USE_PME_STREAM
) && !defined(USE_LJPME)
energyBuffer
[
blockIdx
.
x
*
blockDim
.
x
+
threadIdx
.
x
]
=
0.5
f
*
energy
;
#else
energyBuffer
[
blockIdx
.
x
*
blockDim
.
x
+
threadIdx
.
x
]
+=
0.5
f
*
energy
;
...
...
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