Merge branch 'master' of github.com:leeping/openmm

platforms/opencl/src/OpenCLPlatform.cpp

@@ -40,9 +40,15 @@ using std::string;
 using std::stringstream;
 using std::vector;
 
+#ifdef OPENMM_OPENCL_BUILDING_STATIC_LIBRARY
+extern "C" void registerOpenCLPlatform() {
+    Platform::registerPlatform(new OpenCLPlatform());
+}
+#else
 extern "C" OPENMM_EXPORT_OPENCL void registerPlatforms() {
     Platform::registerPlatform(new OpenCLPlatform());
 }
+#endif
 
 OpenCLPlatform::OpenCLPlatform() {
     OpenCLKernelFactory* factory = new OpenCLKernelFactory();

platforms/opencl/staticTarget/CMakeLists.txt

+#
+# Include OpenCL related files.
+#
+# INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/../FindOpenCL.cmake)
+INCLUDE_DIRECTORIES(${OPENCL_INCLUDE_DIR})
+
+FILE(GLOB OPENCL_KERNELS ${CL_SOURCE_DIR}/kernels/*.cl)
+ADD_CUSTOM_COMMAND(OUTPUT ${CL_KERNELS_CPP} ${CL_KERNELS_H}
+    COMMAND ${CMAKE_COMMAND}
+    ARGS -D CL_SOURCE_DIR=${CL_SOURCE_DIR} -D CL_KERNELS_CPP=${CL_KERNELS_CPP} -D CL_KERNELS_H=${CL_KERNELS_H} -D CL_SOURCE_CLASS=${CL_SOURCE_CLASS} -P ${CMAKE_CURRENT_SOURCE_DIR}/../EncodeCLFiles.cmake
+    DEPENDS ${OPENCL_KERNELS}
+)
+SET_SOURCE_FILES_PROPERTIES(${CL_KERNELS_CPP} ${CL_KERNELS_H} PROPERTIES GENERATED TRUE)
+ADD_LIBRARY(${STATIC_TARGET} STATIC ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES})
+
+IF (UNIX AND CMAKE_BUILD_TYPE MATCHES Debug)
+    SET(MAIN_OPENMM_LIB ${OPENMM_LIBRARY_NAME}_d)
+ELSE (UNIX AND CMAKE_BUILD_TYPE MATCHES Debug)
+    SET(MAIN_OPENMM_LIB ${OPENMM_LIBRARY_NAME})
+ENDIF (UNIX AND CMAKE_BUILD_TYPE MATCHES Debug)
+TARGET_LINK_LIBRARIES(${STATIC_TARGET} ${MAIN_OPENMM_LIB}  ${OPENCL_LIBRARIES} ${PTHREADS_LIB_STATIC})
+#-DPTW32_STATIC_LIB only works for the windows pthreads.
+SET_TARGET_PROPERTIES(${STATIC_TARGET} PROPERTIES LINK_FLAGS "${EXTRA_COMPILE_FLAGS}" COMPILE_FLAGS "${EXTRA_COMPILE_FLAGS} -DOPENMM_OPENCL_BUILDING_STATIC_LIBRARY -DPTW32_STATIC_LIB")
+
+INSTALL_TARGETS(/lib/plugins RUNTIME_DIRECTORY /lib/plugins ${STATIC_TARGET})

platforms/opencl/tests/TestOpenCLCustomGBForce.cpp

@@ -277,7 +277,7 @@ void testTabulatedFunction() {
     vector<double> table;
     for (int i = 0; i < 21; i++)
         table.push_back(std::sin(0.25*i));
-    force->addFunction("fn", table, 1.0, 6.0);
+    force->addTabulatedFunction("fn", new Continuous1DFunction(table, 1.0, 6.0));
     system.addForce(force);
     Context context(system, integrator, platform);
     vector<Vec3> positions(2);

platforms/opencl/tests/TestOpenCLCustomHbondForce.cpp

@@ -214,7 +214,7 @@ void testCustomFunctions() {
     vector<double> function(2);
     function[0] = 0;
     function[1] = 1;
-    custom->addFunction("foo", function, 0, 10);
+    custom->addTabulatedFunction("foo", new Continuous1DFunction(function, 0, 10));
     system.addForce(custom);
     Context context(system, integrator, platform);
     vector<Vec3> positions(3);

platforms/reference/include/ReferenceProperDihedralBond.h

@@ -29,7 +29,7 @@
 
 // ---------------------------------------------------------------------------------------
 
-class ReferenceProperDihedralBond : public ReferenceBondIxn {
+class OPENMM_EXPORT ReferenceProperDihedralBond : public ReferenceBondIxn {
 
    private:
 

platforms/reference/include/ReferenceRbDihedralBond.h

@@ -29,7 +29,7 @@
 
 // ---------------------------------------------------------------------------------------
 
-class ReferenceRbDihedralBond : public ReferenceBondIxn {
+class OPENMM_EXPORT ReferenceRbDihedralBond : public ReferenceBondIxn {
 
    private:
 

platforms/reference/tests/TestReferenceCustomGBForce.cpp

@@ -281,7 +281,7 @@ void testTabulatedFunction() {
     vector<double> table;
     for (int i = 0; i < 21; i++)
         table.push_back(std::sin(0.25*i));
-    force->addFunction("fn", table, 1.0, 6.0);
+    force->addTabulatedFunction("fn", new Continuous1DFunction(table, 1.0, 6.0));
     system.addForce(force);
     Context context(system, integrator, platform);
     vector<Vec3> positions(2);