Merge github.com:leeping/openmm

e3b25204 · leeping · 41e9a095 · 74415dd9 · e3b25204 · e3b25204
Commit e3b25204 authored Jul 15, 2013 by leeping
20 changed files
--- a/platforms/reference/tests/TestReferenceHarmonicAngleForce.cpp
+++ b/platforms/reference/tests/TestReferenceHarmonicAngleForce.cpp
--- a/platforms/reference/tests/TestReferenceHarmonicBondForce.cpp
+++ b/platforms/reference/tests/TestReferenceHarmonicBondForce.cpp
--- a/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp
+++ b/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp
--- a/platforms/reference/tests/TestReferenceMonteCarloBarostat.cpp
+++ b/platforms/reference/tests/TestReferenceMonteCarloBarostat.cpp
--- a/platforms/reference/tests/TestReferenceNeighborList.cpp
+++ b/platforms/reference/tests/TestReferenceNeighborList.cpp
--- a/platforms/reference/tests/TestReferenceNonbondedForce.cpp
+++ b/platforms/reference/tests/TestReferenceNonbondedForce.cpp
--- a/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp
+++ b/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp
--- a/platforms/reference/tests/TestReferenceRBTorsionForce.cpp
+++ b/platforms/reference/tests/TestReferenceRBTorsionForce.cpp
--- a/platforms/reference/tests/TestReferenceRandom.cpp
+++ b/platforms/reference/tests/TestReferenceRandom.cpp
--- a/platforms/reference/tests/TestReferenceVariableLangevinIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceVariableLangevinIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceVariableVerletIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceVariableVerletIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceVerletIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceVerletIntegrator.cpp
--- a/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp
+++ b/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp
--- a/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.h
+++ b/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceAngleForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceAngleForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.h