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Commit e07b8c94 authored by Peter Eastman's avatar Peter Eastman
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Created CMake script for generating API wrappers. Also updated the wrapper... 

Created CMake script for generating API wrappers.  Also updated the wrapper scripts to handle vector<double>.
parent 24977299
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CMakeLists.txt
View file @ e07b8c94
......@@ -239,6 +239,12 @@ FOREACH(subdir ${OPENMM_SOURCE_SUBDIRS})
INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/${subdir}/include)
ENDFOREACH(subdir)
# If API wrappers are being generated, and add them to the build.
SET(OPENMM_BUILD_API_WRAPPERS OFF CACHE BOOL "Build wrappers for C and Fortran")
IF(OPENMM_BUILD_API_WRAPPERS)
SET(SOURCE_FILES ${SOURCE_FILES} wrappers/OpenMMCWrapper.cpp wrappersOpenMMFortranWrapper.cpp/)
ENDIF(OPENMM_BUILD_API_WRAPPERS)
INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/src)
ADD_LIBRARY(${SHARED_TARGET} SHARED ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES})
......@@ -306,3 +312,10 @@ ENDIF (EXECUTABLE_OUTPUT_PATH)
INCLUDE(ApiDoxygen.cmake)
#
# Generate API wrappers if requested.
#
IF(OPENMM_BUILD_API_WRAPPERS)
ADD_SUBDIRECTORY(wrappers)
ENDIF(OPENMM_BUILD_API_WRAPPERS)
wrappers/CMakeLists.txt 0 → 100644
View file @ e07b8c94
INCLUDE(FindJava)
SET(GCCXML_ARGS) # start empty
FOREACH(subdir ${API_INCLUDE_DIRS})
SET(GCCXML_ARGS ${GCCXML_ARGS} -I${subdir})
ENDFOREACH(subdir)
SET(GCCXML_PATH "/usr/local/bin/gccxml" CACHE PATH "Path to the gccxml executable")
ADD_CUSTOM_COMMAND(OUTPUT OpenMMApi.xml COMMAND ${GCCXML_PATH} ${GCCXML_ARGS} ${CMAKE_SOURCE_DIR}/openmmapi/include/OpenMM.h -fxml=OpenMMApi.xml)
ADD_CUSTOM_COMMAND(OUTPUT OpenMMCWrapper.h COMMAND ${JAVA_RUNTIME} -jar ${CMAKE_SOURCE_DIR}/wrappers/saxonb9-1-0-7j/saxon9.jar -t -s:OPENMMAPI.xml
-xsl:${CMAKE_SOURCE_DIR}/wrappers/CWrapper_Header.xslt -o:OpenMMCWrapper.h DEPENDS OpenMMApi.xml)
ADD_CUSTOM_COMMAND(OUTPUT OpenMMCWrapper.cpp COMMAND ${JAVA_RUNTIME} -jar ${CMAKE_SOURCE_DIR}/wrappers/saxonb9-1-0-7j/saxon9.jar -t -s:OPENMMAPI.xml
-xsl:${CMAKE_SOURCE_DIR}/wrappers/CWrapper_Source.xslt -o:OpenMMCWrapper.cpp DEPENDS OpenMMApi.xml)
ADD_CUSTOM_COMMAND(OUTPUT OpenMMFortranModule.f90 COMMAND ${JAVA_RUNTIME} -jar ${CMAKE_SOURCE_DIR}/wrappers/saxonb9-1-0-7j/saxon9.jar -t -s:OPENMMAPI.xml
-xsl:${CMAKE_SOURCE_DIR}/wrappers/FortranWrapper_Header.xslt -o:OpenMMFortranModule.f90 DEPENDS OpenMMApi.xml)
ADD_CUSTOM_COMMAND(OUTPUT OpenMMFortranWrapper.cpp COMMAND ${JAVA_RUNTIME} -jar ${CMAKE_SOURCE_DIR}/wrappers/saxonb9-1-0-7j/saxon9.jar -t -s:OPENMMAPI.xml
-xsl:${CMAKE_SOURCE_DIR}/wrappers/FortranWrapper_Source.xslt -o:OpenMMFortranWrapper.cpp DEPENDS OpenMMApi.xml)
ADD_CUSTOM_TARGET(ApiWrappers DEPENDS OpenMMCWrapper.h OpenMMCWrapper.cpp OpenMMFortranModule.f90 OpenMMFortranWrapper.cpp)
ADD_DEPENDENCIES(${SHARED_TARGET} ApiWrappers)
ADD_DEPENDENCIES(${STATIC_TARGET} ApiWrappers)
INSTALL_FILES(/include FILES OpenMMCWrapper.h OpenMMFortranModule.f90)
wrappers/CWrapper_Header.xslt
View file @ e07b8c94
......@@ -6,6 +6,7 @@
<xsl:variable name="std_namespace_id" select="/GCC_XML/Namespace[@name='std']/@id"/>
<xsl:variable name="openmm_namespace_id" select="/GCC_XML/Namespace[@name='OpenMM']/@id"/>
<xsl:variable name="bool_type_id" select="/GCC_XML/FundamentalType[@name='bool']/@id"/>
<xsl:variable name="double_type_id" select="/GCC_XML/FundamentalType[@name='double']/@id"/>
<xsl:variable name="string_type_id" select="/GCC_XML/*[@name='string' and @context=$std_namespace_id]/@id"/>
<xsl:variable name="const_string_type_id" select="/GCC_XML/CvQualifiedType[@type=$string_type_id]/@id"/>
<xsl:variable name="const_ref_string_type_id" select="/GCC_XML/ReferenceType[@type=$const_string_type_id]/@id"/>
......@@ -13,6 +14,7 @@
<xsl:variable name="vector_vec3_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;OpenMM::Vec3')]/@id"/>
<xsl:variable name="vector_bond_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;std::pair&lt;int, int')]/@id"/>
<xsl:variable name="map_parameter_type_id" select="/GCC_XML/Class[starts-with(@name, 'map&lt;std::basic_string')]/@id"/>
<xsl:variable name="vector_double_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;double')]/@id"/>
<!-- Do not generate functions for the following classes -->
<xsl:variable name="skip_classes" select="('Vec3', 'Kernel', 'Stream', 'KernelImpl', 'StreamImpl', 'KernelFactory', 'StreamFactory')"/>
......@@ -39,6 +41,7 @@ typedef struct OpenMM_Vec3Array_struct OpenMM_Vec3Array;
typedef struct OpenMM_StringArray_struct OpenMM_StringArray;
typedef struct OpenMM_BondArray_struct OpenMM_BondArray;
typedef struct OpenMM_ParameterArray_struct OpenMM_ParameterArray;
typedef struct OpenMM_DoubleArray_struct OpenMM_DoubleArray;
typedef struct {double x, y, z;} OpenMM_Vec3;
typedef enum {OpenMM_False = 0, OpenMM_True = 1} OpenMM_Boolean;
......@@ -80,6 +83,10 @@ extern void OpenMM_BondArray_get(const OpenMM_BondArray* array, int index, int*
/* OpenMM_ParameterArray */
extern int OpenMM_ParameterArray_getSize(const OpenMM_ParameterArray* array);
extern double OpenMM_ParameterArray_get(const OpenMM_ParameterArray* array, const char* name);
<xsl:call-template name="primitive_array">
<xsl:with-param name="element_type" select="'double'"/>
<xsl:with-param name="name" select="'OpenMM_DoubleArray'"/>
</xsl:call-template>
/* These methods need to be handled specially, since their C++ APIs cannot be directly translated to C.
Unlike the C++ versions, the return value is allocated on the heap, and you must delete it yourself. */
......@@ -98,6 +105,20 @@ extern OpenMM_StringArray* OpenMM_Platform_loadPluginsFromDirectory(const char*
#endif /*OPENMM_CWRAPPER_H_*/
</xsl:template>
<!-- Print out the declarations for a (Primitive)Array type -->
<xsl:template name="primitive_array">
<xsl:param name="element_type"/>
<xsl:param name="name"/>
/* <xsl:value-of select="$name"/> */
extern <xsl:value-of select="$name"/>* <xsl:value-of select="$name"/>_create(int size);
extern void <xsl:value-of select="$name"/>_destroy(<xsl:value-of select="$name"/>* array);
extern int <xsl:value-of select="$name"/>_getSize(const <xsl:value-of select="$name"/>* array);
extern void <xsl:value-of select="$name"/>_resize(<xsl:value-of select="$name"/>* array, int size);
extern void <xsl:value-of select="$name"/>_append(<xsl:value-of select="$name"/>* array, <xsl:value-of select="$element_type"/> value);
extern void <xsl:value-of select="$name"/>_set(<xsl:value-of select="$name"/>* array, int index, <xsl:value-of select="$element_type"/> value);
extern <xsl:value-of select="concat($element_type, ' ', $name)"/>_get(const <xsl:value-of select="$name"/>* array, int index);
</xsl:template>
<!-- Print out information for a class -->
<xsl:template name="class">
<xsl:variable name="class_name" select="@name"/>
......@@ -206,6 +227,9 @@ extern <xsl:call-template name="wrap_type"><xsl:with-param name="type_id" select
<xsl:when test="$type_id=$map_parameter_type_id">
<xsl:value-of select="'OpenMM_ParameterArray'"/>
</xsl:when>
<xsl:when test="$type_id=$vector_double_type_id">
<xsl:value-of select="'OpenMM_DoubleArray'"/>
</xsl:when>
<xsl:when test="local-name($node)='ReferenceType' or local-name($node)='PointerType'">
<xsl:call-template name="wrap_type">
<xsl:with-param name="type_id" select="$node/@type"/>
......
wrappers/CWrapper_Source.xslt
View file @ e07b8c94
......@@ -7,6 +7,7 @@
<xsl:variable name="openmm_namespace_id" select="/GCC_XML/Namespace[@name='OpenMM']/@id"/>
<xsl:variable name="void_type_id" select="/GCC_XML/FundamentalType[@name='void']/@id"/>
<xsl:variable name="bool_type_id" select="/GCC_XML/FundamentalType[@name='bool']/@id"/>
<xsl:variable name="double_type_id" select="/GCC_XML/FundamentalType[@name='double']/@id"/>
<xsl:variable name="string_type_id" select="/GCC_XML/*[@name='string' and @context=$std_namespace_id]/@id"/>
<xsl:variable name="const_string_type_id" select="/GCC_XML/CvQualifiedType[@type=$string_type_id]/@id"/>
<xsl:variable name="const_ref_string_type_id" select="/GCC_XML/ReferenceType[@type=$const_string_type_id]/@id"/>
......@@ -15,6 +16,7 @@
<xsl:variable name="vector_vec3_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;OpenMM::Vec3')]/@id"/>
<xsl:variable name="vector_bond_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;std::pair&lt;int, int')]/@id"/>
<xsl:variable name="map_parameter_type_id" select="/GCC_XML/Class[starts-with(@name, 'map&lt;std::basic_string')]/@id"/>
<xsl:variable name="vector_double_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;double')]/@id"/>
<xsl:variable name="newline">
<xsl:text>
</xsl:text>
......@@ -130,6 +132,10 @@ double OpenMM_ParameterArray_get(const OpenMM_ParameterArray* array, const char*
throw OpenMMException("OpenMM_ParameterArray_get: No such parameter");
return iter->second;
}
<xsl:call-template name="primitive_array">
<xsl:with-param name="element_type" select="'double'"/>
<xsl:with-param name="name" select="'OpenMM_DoubleArray'"/>
</xsl:call-template>
/* These methods need to be handled specially, since their C++ APIs cannot be directly translated to C.
Unlike the C++ versions, the return value is allocated on the heap, and you must delete it yourself. */
......@@ -152,6 +158,34 @@ OpenMM_StringArray* OpenMM_Platform_loadPluginsFromDirectory(const char* directo
#endif
</xsl:template>
<!-- Print out the definitions for a (Primitive)Array type -->
<xsl:template name="primitive_array">
<xsl:param name="element_type"/>
<xsl:param name="name"/>
/* <xsl:value-of select="$name"/> */
<xsl:value-of select="$name"/>* <xsl:value-of select="$name"/>_create(int size) {
return reinterpret_cast&lt;<xsl:value-of select="$name"/>*&gt;(new vector&lt;<xsl:value-of select="$element_type"/>&gt;(size));
}
void <xsl:value-of select="$name"/>_destroy(<xsl:value-of select="$name"/>* array) {
delete reinterpret_cast&lt;vector&lt;<xsl:value-of select="$element_type"/>&gt;*&gt;(array);
}
int <xsl:value-of select="$name"/>_getSize(const <xsl:value-of select="$name"/>* array) {
return reinterpret_cast&lt;const vector&lt;<xsl:value-of select="$element_type"/>&gt;*&gt;(array)->size();
}
void <xsl:value-of select="$name"/>_resize(<xsl:value-of select="$name"/>* array, int size) {
reinterpret_cast&lt;vector&lt;<xsl:value-of select="$element_type"/>&gt;*&gt;(array)->resize(size);
}
void <xsl:value-of select="$name"/>_append(<xsl:value-of select="$name"/>* array, <xsl:value-of select="$element_type"/> value) {
reinterpret_cast&lt;vector&lt;<xsl:value-of select="$element_type"/>&gt;*&gt;(array)->push_back(value);
}
void <xsl:value-of select="$name"/>_set(<xsl:value-of select="$name"/>* array, int index, <xsl:value-of select="$element_type"/> value) {
(*reinterpret_cast&lt;vector&lt;<xsl:value-of select="$element_type"/>&gt;*&gt;(array))[index] = value;
}
double <xsl:value-of select="$name"/>_get(const <xsl:value-of select="$name"/>* array, int index) {
return (*reinterpret_cast&lt;const vector&lt;<xsl:value-of select="$element_type"/>&gt;*&gt;(array))[index];
}
</xsl:template>
<!-- Print out information for a class -->
<xsl:template name="class">
<xsl:variable name="class_name" select="@name"/>
......@@ -298,6 +332,9 @@ OpenMM_<xsl:value-of select="concat(@name, '* OpenMM_', @name, '_create', $suffi
<xsl:when test="$type_id=$map_parameter_type_id">
<xsl:value-of select="'OpenMM_ParameterArray'"/>
</xsl:when>
<xsl:when test="$type_id=$vector_double_type_id">
<xsl:value-of select="'OpenMM_DoubleArray'"/>
</xsl:when>
<xsl:when test="local-name($node)='ReferenceType' or local-name($node)='PointerType'">
<xsl:call-template name="wrap_type">
<xsl:with-param name="type_id" select="$node/@type"/>
......@@ -342,6 +379,9 @@ OpenMM_<xsl:value-of select="concat(@name, '* OpenMM_', @name, '_create', $suffi
<xsl:when test="$type_id=$map_parameter_type_id">
<xsl:value-of select="'map&lt;string, double&gt;'"/>
</xsl:when>
<xsl:when test="$type_id=$vector_double_type_id">
<xsl:value-of select="'vector&lt;double&gt;'"/>
</xsl:when>
<xsl:when test="local-name($node)='ReferenceType' or local-name($node)='PointerType'">
<xsl:call-template name="unwrap_type">
<xsl:with-param name="type_id" select="$node/@type"/>
......
wrappers/FortranWrapper_Header.xslt
View file @ e07b8c94
......@@ -18,6 +18,7 @@
<xsl:variable name="vector_vec3_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;OpenMM::Vec3')]/@id"/>
<xsl:variable name="vector_bond_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;std::pair&lt;int, int')]/@id"/>
<xsl:variable name="map_parameter_type_id" select="/GCC_XML/Class[starts-with(@name, 'map&lt;std::basic_string')]/@id"/>
<xsl:variable name="vector_double_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;double')]/@id"/>
<xsl:variable name="newline">
<xsl:text>
</xsl:text>
......@@ -63,6 +64,10 @@ MODULE OpenMM_Types
integer*8 :: handle = 0
end type
type OpenMM_DoubleArray
integer*8 :: handle = 0
end type
! Enumerations
integer*4 OpenMM_False
......@@ -221,6 +226,10 @@ MODULE OpenMM
character(*) name
character(*) result
end
<xsl:call-template name="primitive_array">
<xsl:with-param name="element_type" select="'real*8'"/>
<xsl:with-param name="name" select="'OpenMM_DoubleArray'"/>
</xsl:call-template>
<!-- Class members -->
<xsl:for-each select="Class[@context=$openmm_namespace_id and empty(index-of($skip_classes, @name))]">
......@@ -230,6 +239,49 @@ MODULE OpenMM
END MODULE OpenMM
</xsl:template>
<!-- Print out the declarations for a (Primitive)Array type -->
<xsl:template name="primitive_array">
<xsl:param name="element_type"/>
<xsl:param name="name"/>
! <xsl:value-of select="$name"/>
subroutine <xsl:value-of select="$name"/>_create(result, size)
use OpenMM_Types; implicit none
integer*4 size
type (<xsl:value-of select="$name"/>) result
end
subroutine <xsl:value-of select="$name"/>_destroy(destroy)
use OpenMM_Types; implicit none
type (<xsl:value-of select="$name"/>) destroy
end
function <xsl:value-of select="$name"/>_getSize(target)
use OpenMM_Types; implicit none
type (<xsl:value-of select="$name"/>) target
integer*4 <xsl:value-of select="$name"/>_getSize
end
subroutine <xsl:value-of select="$name"/>_resize(target, size)
use OpenMM_Types; implicit none
type (<xsl:value-of select="$name"/>) target
integer*4 size
end
subroutine <xsl:value-of select="$name"/>_append(target, value
use OpenMM_Types; implicit none
type (<xsl:value-of select="$name"/>) target
<xsl:value-of select="$element_type"/> value
end
subroutine <xsl:value-of select="$name"/>_set(target, index, value)
use OpenMM_Types; implicit none
type (<xsl:value-of select="$name"/>) target
integer*4 index
<xsl:value-of select="$element_type"/> value
end
subroutine <xsl:value-of select="$name"/>_get(target, index, result)
use OpenMM_Types; implicit none
type (<xsl:value-of select="$name"/>) target
integer*4 index
<xsl:value-of select="$element_type"/> result
end
</xsl:template>
<!-- Print out information for a class -->
<xsl:template name="class">
<xsl:variable name="class_name" select="@name"/>
......@@ -401,6 +453,9 @@ END MODULE OpenMM
<xsl:when test="$type_id=$map_parameter_type_id">
<xsl:value-of select="concat('type (OpenMM_ParameterArray) ', $value)"/>
</xsl:when>
<xsl:when test="$type_id=$vector_double_type_id">
<xsl:value-of select="concat('type (OpenMM_DoubleArray) ', $value)"/>
</xsl:when>
<xsl:when test="local-name($node)='ReferenceType' or local-name($node)='PointerType'">
<xsl:call-template name="declare_argument">
<xsl:with-param name="type_id" select="$node/@type"/>
......
wrappers/FortranWrapper_Source.xslt
View file @ e07b8c94
......@@ -20,6 +20,7 @@
<xsl:variable name="vector_vec3_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;OpenMM::Vec3')]/@id"/>
<xsl:variable name="vector_bond_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;std::pair&lt;int, int')]/@id"/>
<xsl:variable name="map_parameter_type_id" select="/GCC_XML/Class[starts-with(@name, 'map&lt;std::basic_string')]/@id"/>
<xsl:variable name="vector_double_type_id" select="/GCC_XML/Class[starts-with(@name, 'vector&lt;double')]/@id"/>
<xsl:variable name="newline">
<xsl:text>
</xsl:text>
......@@ -214,6 +215,10 @@ double openmm_parameterarray_get_(const OpenMM_ParameterArray* const&amp; array,
double OPENMM_PARAMETERARRAY_GET(const OpenMM_ParameterArray* const&amp; array, const char* name, int length) {
return OpenMM_ParameterArray_get(array, string(name, length).c_str());
}
<xsl:call-template name="primitive_array">
<xsl:with-param name="element_type" select="'double'"/>
<xsl:with-param name="name" select="'OpenMM_DoubleArray'"/>
</xsl:call-template>
/* These methods need to be handled specially, since their C++ APIs cannot be directly translated to C.
Unlike the C++ versions, the return value is allocated on the heap, and you must delete it yourself. */
......@@ -238,6 +243,59 @@ void OPENMM_PLATFORM_LOADPLUGINSFROMDIRECTORY(const char* directory, OpenMM_Stri
}
</xsl:template>
<!-- Print out the definitions for a (Primitive)Array type -->
<xsl:template name="primitive_array">
<xsl:param name="element_type"/>
<xsl:param name="name"/>
<xsl:variable name="name_lower" select="lower-case($name)"/>
<xsl:variable name="name_upper" select="upper-case($name)"/>
/* <xsl:value-of select="$name"/> */
void <xsl:value-of select="$name_lower"/>_create_(<xsl:value-of select="$name"/>*&amp; result, const int&amp; size) {
result = <xsl:value-of select="$name"/>_create(size);
}
void <xsl:value-of select="$name_upper"/>_CREATE(<xsl:value-of select="$name"/>*&amp; result, const int&amp; size) {
result = <xsl:value-of select="$name"/>_create(size);
}
void <xsl:value-of select="$name_lower"/>_destroy_(<xsl:value-of select="$name"/>*&amp; array) {
<xsl:value-of select="$name"/>_destroy(array);
array = 0;
}
void <xsl:value-of select="$name_upper"/>_DESTROY(<xsl:value-of select="$name"/>*&amp; array) {
<xsl:value-of select="$name"/>_destroy(array);
array = 0;
}
int <xsl:value-of select="$name_lower"/>_getsize_(const <xsl:value-of select="$name"/>* const&amp; array) {
return <xsl:value-of select="$name"/>_getSize(array);
}
int <xsl:value-of select="$name_upper"/>_GETSIZE(const <xsl:value-of select="$name"/>* const&amp; array) {
return <xsl:value-of select="$name"/>_getSize(array);
}
void <xsl:value-of select="$name_lower"/>_resize_(<xsl:value-of select="$name"/>* const&amp; array, const int&amp; size) {
<xsl:value-of select="$name"/>_resize(array, size);
}
void <xsl:value-of select="$name_upper"/>_RESIZE(<xsl:value-of select="$name"/>* const&amp; array, const int&amp; size) {
<xsl:value-of select="$name"/>_resize(array, size);
}
void <xsl:value-of select="$name_lower"/>_append_(<xsl:value-of select="$name"/>* const&amp; array, <xsl:value-of select="$element_type"/> value) {
<xsl:value-of select="$name"/>_append(array, value);
}
void <xsl:value-of select="$name_upper"/>_APPEND(<xsl:value-of select="$name"/>* const&amp; array, <xsl:value-of select="$element_type"/> value) {
<xsl:value-of select="$name"/>_append(array, value);
}
void <xsl:value-of select="$name_lower"/>_set_(<xsl:value-of select="$name"/>* const&amp; array, const int&amp; index, <xsl:value-of select="$element_type"/> value) {
<xsl:value-of select="$name"/>_set(array, index-1, value);
}
void <xsl:value-of select="$name_upper"/>_SET(<xsl:value-of select="$name"/>* const&amp; array, const int&amp; index, <xsl:value-of select="$element_type"/> value) {
<xsl:value-of select="$name"/>_set(array, index-1, value);
}
void <xsl:value-of select="$name_lower"/>_get_(const <xsl:value-of select="$name"/>* const&amp; array, const int&amp; index, <xsl:value-of select="$element_type"/> value&amp; result) {
result = <xsl:value-of select="$name"/>_get(array, index-1);
}
void <xsl:value-of select="$name_upper"/>_GET(const <xsl:value-of select="$name"/>* const&amp; array, const int&amp; index, <xsl:value-of select="$element_type"/> value&amp; result) {
result = <xsl:value-of select="$name"/>_get(array, index-1);
}
</xsl:template>
<!-- Print out information for a class -->
<xsl:template name="class">
<xsl:variable name="class_name" select="@name"/>
......@@ -469,6 +527,9 @@ void OPENMM_PLATFORM_LOADPLUGINSFROMDIRECTORY(const char* directory, OpenMM_Stri
<xsl:when test="$type_id=$map_parameter_type_id">
<xsl:value-of select="'OpenMM_ParameterArray'"/>
</xsl:when>
<xsl:when test="$type_id=$vector_double_type_id">
<xsl:value-of select="'OpenMM_DoubleArray'"/>
</xsl:when>
<xsl:when test="local-name($node)='ReferenceType' or local-name($node)='PointerType'">
<xsl:call-template name="wrap_type">
<xsl:with-param name="type_id" select="$node/@type"/>
......@@ -505,6 +566,7 @@ void OPENMM_PLATFORM_LOADPLUGINSFROMDIRECTORY(const char* directory, OpenMM_Stri
<xsl:when test="$type_id=$vector_vec3_type_id">1</xsl:when>
<xsl:when test="$type_id=$vector_bond_type_id">1</xsl:when>
<xsl:when test="$type_id=$map_parameter_type_id">1</xsl:when>
<xsl:when test="$type_id=$vector_double_type_id">1</xsl:when>
<xsl:when test="$type_id=$vector_string_type_id">1</xsl:when>
<xsl:when test="local-name($node)='Class' and $node/@context=$openmm_namespace_id">1</xsl:when>
<xsl:when test="local-name($node)='ReferenceType' or local-name($node)='PointerType'">
......
wrappers/saxonb9-1-0-7j/doc/index.html 0 → 100644
View file @ e07b8c94
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<div id="LogoArea" style="position:absolute; width:340px; height:72px; z-index:3; right: 0px; top: 0px; border: 1px none #000000; visibility: visible;"><a href="http://www.saxonica.com/"><img src="img/saxonica_logo.gif" width="340" height="72" border="0" alt="Saxonica.com"></a></div>
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<h1>Welcome to Saxon</h1>
<p class="subhead">Online Documentation</p>
<p>Saxon documentation for the current release is available online:</p>
<ul>
<li><p><a href="http://www.saxonica.com/documentation/documentation.html" class="bodylink">Saxon Documentation</a></p></li>
<li><p><a href="http://www.saxonica.com/documentation/javadoc/index.html" class="bodylink">Javadoc API Documentation</a></p></li>
<li><p><a href="http://www.saxonica.com/documentation/dotnetdoc/index.html" class="bodylink">.NET API Documentation</a></p></li>
</ul>
<p class="subhead">Downloads</p>
<p>Saxon documentation, together with source code and sample applications
can also be downloaded, both for the current release and for earlier releases.
</p>
<p>The same file <code>saxon-resources8-N.zip</code> covers both Saxon products
(Saxon-B and Saxon-SA), and both platforms (Java and .NET).</p>
<p>The file also contains sample applications and Saxon-B source code.</p>
<ul>
<li><p><a class="bodylink" href="http://sourceforge.net/project/showfiles.php?group_id=29872">Saxon-B downloads at SourceForge</a></li>
<li><p><a class="bodylink" href="http://www.saxonica.com/">Saxon-SA downloads at www.saxonica.com</a></li>
</ul>
</div>
</body>
</html>
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Apache Ant
Copyright 1999-2006 The Apache Software Foundation
This product includes software developed by
The Apache Software Foundation (http://www.apache.org/).
This product includes also software developed by :
- the W3C consortium (http://www.w3c.org) ,
- the SAX project (http://www.saxproject.org)
The <sync> task is based on code Copyright (c) 2002, Landmark
Graphics Corp that has been kindly donated to the Apache Software
Foundation.
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Copyright © 1999 CERN - European Organization for Nuclear Research.<br/><br/>
Permission to use, copy, modify, distribute and sell this software and its documentation for any purpose
is hereby granted without fee, provided that the above copyright notice appear in all copies and
that both that copyright notice and this permission notice appear in supporting documentation.
CERN makes no representations about the suitability of this software for any purpose.
It is provided "as is" without expressed or implied warranty.
\ No newline at end of file
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Copyright (C) 2002-2007 Jeroen Frijters
This software is provided 'as-is', without any express or implied
warranty. In no event will the authors be held liable for any damages
arising from the use of this software.
Permission is granted to anyone to use this software for any purpose,
including commercial applications, and to alter it and redistribute it
freely, subject to the following restrictions:
1. The origin of this software must not be misrepresented; you must not
claim that you wrote the original software. If you use this software
in a product, an acknowledgment in the product documentation would be
appreciated but is not required.
2. Altered source versions must be plainly marked as such, and must not be
misrepresented as being the original software.
3. This notice may not be removed or altered from any source distribution.
Jeroen Frijters
jeroen@frijters.net
wrappers/saxonb9-1-0-7j/notices/GPL+CLASSPATH.txt 0 → 100644
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The GNU General Public License (GPL)
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies of this license
document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your freedom to share
and change it. By contrast, the GNU General Public License is intended to
guarantee your freedom to share and change free software--to make sure the
software is free for all its users. This General Public License applies to
most of the Free Software Foundation's software and to any other program whose
authors commit to using it. (Some other Free Software Foundation software is
covered by the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not price. Our
General Public Licenses are designed to make sure that you have the freedom to
distribute copies of free software (and charge for this service if you wish),
that you receive source code or can get it if you want it, that you can change
the software or use pieces of it in new free programs; and that you know you
can do these things.
To protect your rights, we need to make restrictions that forbid anyone to deny
you these rights or to ask you to surrender the rights. These restrictions
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For example, if you distribute copies of such a program, whether gratis or for
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make sure that they, too, receive or can get the source code. And you must
show them these terms so they know their rights.
We protect your rights with two steps: (1) copyright the software, and (2)
offer you this license which gives you legal permission to copy, distribute
and/or modify the software.
Also, for each author's protection and ours, we want to make certain that
everyone understands that there is no warranty for this free software. If the
software is modified by someone else and passed on, we want its recipients to
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Finally, any free program is threatened constantly by software patents. We
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To prevent this, we have made it clear that any patent must be licensed for
everyone's free use or not licensed at all.
The precise terms and conditions for copying, distribution and modification
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TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains a notice
placed by the copyright holder saying it may be distributed under the terms of
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Activities other than copying, distribution and modification are not covered by
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not restricted, and the output from the Program is covered only if its contents
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1. You may copy and distribute verbatim copies of the Program's source code as
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appropriately publish on each copy an appropriate copyright notice and
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and to the absence of any warranty; and give any other recipients of the
Program a copy of this License along with the Program.
You may charge a fee for the physical act of transferring a copy, and you may
at your option offer warranty protection in exchange for a fee.
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c) If the modified program normally reads commands interactively when run,
you must cause it, when started running for such interactive use in the
most ordinary way, to print or display an announcement including an
appropriate copyright notice and a notice that there is no warranty (or
else, saying that you provide a warranty) and that users may redistribute
the program under these conditions, and telling the user how to view a copy
of this License. (Exception: if the Program itself is interactive but does
not normally print such an announcement, your work based on the Program is
not required to print an announcement.)
These requirements apply to the modified work as a whole. If identifiable
sections of that work are not derived from the Program, and can be reasonably
considered independent and separate works in themselves, then this License, and
its terms, do not apply to those sections when you distribute them as separate
works. But when you distribute the same sections as part of a whole which is a
work based on the Program, the distribution of the whole must be on the terms
of this License, whose permissions for other licensees extend to the entire
whole, and thus to each and every part regardless of who wrote it.
Thus, it is not the intent of this section to claim rights or contest your
rights to work written entirely by you; rather, the intent is to exercise the
right to control the distribution of derivative or collective works based on
the Program.
In addition, mere aggregation of another work not based on the Program with the
Program (or with a work based on the Program) on a volume of a storage or
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3. You may copy and distribute the Program (or a work based on it, under
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This section is intended to make thoroughly clear what is believed to be a
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8. If the distribution and/or use of the Program is restricted in certain
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General Public License from time to time. Such new versions will be similar in
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NO WARRANTY
11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR
THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE
STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE
PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED,
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ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE
PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR
INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA
BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A
FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER
OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest possible
use to the public, the best way to achieve this is to make it free software
which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest to attach
them to the start of each source file to most effectively convey the exclusion
of warranty; and each file should have at least the "copyright" line and a
pointer to where the full notice is found.
One line to give the program's name and a brief idea of what it does.
Copyright (C) <year> <name of author>
This program is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the Free
Software Foundation; either version 2 of the License, or (at your option)
any later version.
This program is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc., 59
Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this when it
starts in an interactive mode:
Gnomovision version 69, Copyright (C) year name of author Gnomovision comes
with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free
software, and you are welcome to redistribute it under certain conditions;
type 'show c' for details.
The hypothetical commands 'show w' and 'show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may be
called something other than 'show w' and 'show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your school,
if any, to sign a "copyright disclaimer" for the program, if necessary. Here
is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
'Gnomovision' (which makes passes at compilers) written by James Hacker.
signature of Ty Coon, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General Public
License instead of this License.
"CLASSPATH" EXCEPTION TO THE GPL
Certain source files distributed by Sun Microsystems, Inc. are subject to
the following clarification and special exception to the GPL, but only where
Sun has expressly included in the particular source file's header the words
"Sun designates this particular file as subject to the "Classpath" exception
as provided by Sun in the LICENSE file that accompanied this code."
Linking this library statically or dynamically with other modules is making
a combined work based on this library. Thus, the terms and conditions of
the GNU General Public License cover the whole combination.
As a special exception, the copyright holders of this library give you
permission to link this library with independent modules to produce an
executable, regardless of the license terms of these independent modules,
and to copy and distribute the resulting executable under terms of your
choice, provided that you also meet, for each linked independent module,
the terms and conditions of the license of that module. An independent
module is a module which is not derived from or based on this library. If
you modify this library, you may extend this exception to your version of
the library, but you are not obligated to do so. If you do not wish to do
so, delete this exception statement from your version.
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Copyright (c) 1998, 1999 James Clark
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
The above copyright notice and this permission notice shall be included
in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED ``AS IS'', WITHOUT WARRANTY OF ANY KIND, EXPRESS
OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL JAMES CLARK BE LIABLE FOR ANY CLAIM, DAMAGES OR
OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
Except as contained in this notice, the name of James Clark shall
not be used in advertising or otherwise to promote the sale, use or
other dealings in this Software without prior written authorization
from James Clark.
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LEGAL NOTICE
This notice is issued to fulfil the requirements of the Mozilla Public License version 1.0 ("MPL 1.0")
sections 3.4(a) and 3.6. MPL 1.0 can be found at http://www.mozilla.org/MPL/MPL-1.0.html.
Section 3.4(a) of MPL 1.0 states that any third party intellectual property rights in particular
functionality or code must be notified in a text file named LEGAL that is issued with the source code. Saxon
includes a number of such third party components, and the relevant claims are included in notices included
in the same directory as this notice. Although MPL 1.0 requires this notice to be included only with source
code, some of the third parties may also require notices to be included with executable code. Therefore, Saxon
executable code must not be distributed separately from this notice and all the accompanying third
party notices. The term "Distribution" here includes making the code available for download, and its
inclusion in download repositories such as Maven.
Section 3.6 of MPL 1.0 states:
You may distribute Covered Code in Executable form only if the requirements of Section 3.1-3.5 have
been met for that Covered Code, and if You include a notice stating that the Source Code version of
the Covered Code is available under the terms of this License, including a description of how and
where You have fulfilled the obligations of Section 3.2.
Section 3.2 requires the Source Code of Covered Code to be made available via an accepted Electronic
Distribution Mechanism.
The Source Code version of the Covered Code (that is, the source code of Saxon-B) is available under the
terms of the Mozilla Public License version 1.0, and may be obtained from the Subversion repository
for the Saxon project on SourceForge, at https://sourceforge.net/svn/?group_id=29872.
The precise version of the Subversion source for a particular Saxon maintenance release can be
determined by referring to the release notes for the particular release in the SourceForge download area.
Note that MPL 1.0 requires that any modifications to this source code must be made available under the terms
of the MPL "to anyone to whom you made an executable version available". As a courtesy, it is also requested
that you make such modifications available to Saxonica Limited.
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The contents of these file are subject to the Mozilla Public License Version 1.0 (the "License");
you may not use these files except in compliance with the License. You may obtain a copy of the
License at http://www.mozilla.org/MPL/
Software distributed under the License is distributed on an "AS IS" basis,
WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License for the
specific language governing rights and limitations under the License.
The Original Code is all Saxon modules labelled with a notice referring to this license.
The Initial Developer of the Original Code is Michael Kay, except where otherwise specified in an individual module.
Portions created by other named contributors are copyright as identified in the relevant module. All Rights Reserved.
Contributor(s) are listed in the documentation: see notices/contributors.
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Copyright (c) 2001-2003 Thai Open Source Software Center Ltd
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in
the documentation and/or other materials provided with the
distribution.
Neither the name of the Thai Open Source Software Center Ltd nor
the names of its contributors may be used to endorse or promote
products derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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COPYRIGHT AND PERMISSION NOTICE
Copyright © 1991-2007 Unicode, Inc. All rights reserved. Distributed under the Terms of Use
in http://www.unicode.org/copyright.html.
Permission is hereby granted, free of charge, to any person obtaining a copy of the Unicode
data files and any associated documentation (the "Data Files") or Unicode software and any
associated documentation (the "Software") to deal in the Data Files or Software without
restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute,
and/or sell copies of the Data Files or Software, and to permit persons to whom the Data Files or
Software are furnished to do so, provided that (a) the above copyright notice(s) and this
permission notice appear with all copies of the Data Files or Software, (b) both the above
copyright notice(s) and this permission notice appear in associated documentation, and
(c) there is clear notice in each modified Data File or in the Software as well as in the
documentation associated with the Data File(s) or Software that the data or software has
been modified.
THE DATA FILES AND SOFTWARE ARE PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF THIRD PARTY RIGHTS.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR HOLDERS INCLUDED IN THIS NOTICE
BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL INDIRECT OR CONSEQUENTIAL DAMAGES,
OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION,
ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THE DATA
FILES OR SOFTWARE.
Except as contained in this notice, the name of a copyright holder shall not be used
in advertising or otherwise to promote the sale, use or other dealings in these
Data Files or Software without prior written authorization of the copyright holder.
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