Merged fork with latest original master

dca54ec7 · Saurabh Belsare · cace5edf · 01f9e415 · dca54ec7 · dca54ec7
Commit dca54ec7 authored Jun 30, 2016 by Saurabh Belsare
20 changed files
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceMultipoleForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceMultipoleForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferencePiTorsionForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferencePiTorsionForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferencePiTorsionForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferencePiTorsionForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceStretchBendForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceStretchBendForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceStretchBendForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceStretchBendForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.h
--- a/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaAngleForce.cpp
+++ b/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaAngleForce.cpp
--- a/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaBondForce.cpp
+++ b/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaBondForce.cpp
--- a/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaExtrapolatedPolarization.cpp
+++ b/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaExtrapolatedPolarization.cpp
--- a/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp
+++ b/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp