Merge branch 'master' into hardwall

cecc774a · Peter Eastman · 1dfa0e59 · a20944f6 · cecc774a · cecc774a
Commit cecc774a authored Oct 05, 2015 by Peter Eastman
20 changed files
--- a/platforms/reference/include/ReferenceAngleBondIxn.h
+++ b/platforms/reference/include/ReferenceAngleBondIxn.h
--- a/platforms/reference/include/ReferenceKernels.h
+++ b/platforms/reference/include/ReferenceKernels.h
--- a/platforms/reference/include/ReferenceStochasticDynamics.h
+++ b/platforms/reference/include/ReferenceStochasticDynamics.h
--- a/platforms/reference/src/ReferenceKernels.cpp
+++ b/platforms/reference/src/ReferenceKernels.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp
--- a/platforms/reference/tests/ReferenceTests.h
+++ b/platforms/reference/tests/ReferenceTests.h
--- a/platforms/reference/tests/TestReferenceAndersenThermostat.cpp
+++ b/platforms/reference/tests/TestReferenceAndersenThermostat.cpp
--- a/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceCMAPTorsionForce.cpp
+++ b/platforms/reference/tests/TestReferenceCMAPTorsionForce.cpp
--- a/platforms/reference/tests/TestReferenceCMMotionRemover.cpp
+++ b/platforms/reference/tests/TestReferenceCMMotionRemover.cpp
--- a/platforms/reference/tests/TestReferenceCheckpoints.cpp
+++ b/platforms/reference/tests/TestReferenceCheckpoints.cpp
--- a/platforms/reference/tests/TestReferenceCustomAngleForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomAngleForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomBondForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomBondForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomCentroidBondForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomCentroidBondForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomCompoundBondForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomCompoundBondForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomExternalForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomExternalForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomGBForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomGBForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomHbondForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomHbondForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceCustomIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp