Can build static AMOEBA libraries

plugins/amoeba/platforms/cuda/CMakeLists.txt

@@ -21,6 +21,7 @@ SET(OPENMM_SOURCE_SUBDIRS .)
 SET(OPENMMAMOEBACUDA_LIBRARY_NAME OpenMMAmoebaCUDA)
 
 SET(SHARED_TARGET ${OPENMMAMOEBACUDA_LIBRARY_NAME})
+SET(STATIC_TARGET ${OPENMMAMOEBACUDA_LIBRARY_NAME}_static)
 
 
 # These are all the places to search for header files which are
@@ -85,17 +86,42 @@ ADD_CUSTOM_COMMAND(OUTPUT ${CUDA_KERNELS_CPP} ${CUDA_KERNELS_H}
     DEPENDS ${CUDA_KERNELS}
 )
 SET_SOURCE_FILES_PROPERTIES(${CUDA_KERNELS_CPP} ${CUDA_KERNELS_H} PROPERTIES GENERATED TRUE)
-ADD_LIBRARY(${SHARED_TARGET} SHARED ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES})
 
-TARGET_LINK_LIBRARIES(${SHARED_TARGET} ${OPENMM_LIBRARY_NAME} ${PTHREADS_LIB})
-TARGET_LINK_LIBRARIES(${SHARED_TARGET} ${OPENMM_LIBRARY_NAME}CUDA)
-TARGET_LINK_LIBRARIES(${SHARED_TARGET} ${SHARED_AMOEBA_TARGET})
-SET_TARGET_PROPERTIES(${SHARED_TARGET} PROPERTIES COMPILE_FLAGS "${EXTRA_COMPILE_FLAGS} -DOPENMM_BUILDING_SHARED_LIBRARY")
-IF (APPLE)
+# Build the shared plugin library.
+
+IF (OPENMM_BUILD_SHARED_LIB)
+    ADD_LIBRARY(${SHARED_TARGET} SHARED ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES})
+
+    TARGET_LINK_LIBRARIES(${SHARED_TARGET} ${OPENMM_LIBRARY_NAME} ${PTHREADS_LIB})
+    TARGET_LINK_LIBRARIES(${SHARED_TARGET} ${OPENMM_LIBRARY_NAME}CUDA)
+    TARGET_LINK_LIBRARIES(${SHARED_TARGET} ${SHARED_AMOEBA_TARGET})
+    SET_TARGET_PROPERTIES(${SHARED_TARGET} PROPERTIES COMPILE_FLAGS "${EXTRA_COMPILE_FLAGS} -DOPENMM_BUILDING_SHARED_LIBRARY")
+    IF (APPLE)
         SET_TARGET_PROPERTIES(${SHARED_TARGET} PROPERTIES LINK_FLAGS "${EXTRA_COMPILE_FLAGS} -F/Library/Frameworks -framework CUDA")
-ELSE (APPLE)
+    ELSE (APPLE)
         SET_TARGET_PROPERTIES(${SHARED_TARGET} PROPERTIES LINK_FLAGS "${EXTRA_LINK_FLAGS}")
-ENDIF (APPLE)
+    ENDIF (APPLE)
+
+    INSTALL_TARGETS(/lib/plugins RUNTIME_DIRECTORY /lib/plugins ${SHARED_TARGET})
+ENDIF (OPENMM_BUILD_SHARED_LIB)
+
+# Build the static plugin library.
+
+IF(OPENMM_BUILD_STATIC_LIB)
+    ADD_LIBRARY(${STATIC_TARGET} STATIC ${SOURCE_FILES} ${SOURCE_INCLUDE_FILES} ${API_ABS_INCLUDE_FILES})
+
+    TARGET_LINK_LIBRARIES(${STATIC_TARGET} ${OPENMM_LIBRARY_NAME} ${PTHREADS_LIB})
+    TARGET_LINK_LIBRARIES(${STATIC_TARGET} ${OPENMM_LIBRARY_NAME}CUDA)
+    TARGET_LINK_LIBRARIES(${STATIC_TARGET} ${STATIC_AMOEBA_TARGET})
+    SET_TARGET_PROPERTIES(${STATIC_TARGET} PROPERTIES COMPILE_FLAGS "${EXTRA_COMPILE_FLAGS} -DOPENMM_BUILDING_STATIC_LIBRARY")
+    IF (APPLE)
+        SET_TARGET_PROPERTIES(${STATIC_TARGET} PROPERTIES LINK_FLAGS "${EXTRA_COMPILE_FLAGS} -F/Library/Frameworks -framework CUDA")
+    ELSE (APPLE)
+        SET_TARGET_PROPERTIES(${STATIC_TARGET} PROPERTIES LINK_FLAGS "${EXTRA_LINK_FLAGS}")
+    ENDIF (APPLE)
+
+    INSTALL_TARGETS(/lib/plugins RUNTIME_DIRECTORY /lib/plugins ${STATIC_TARGET})
+ENDIF(OPENMM_BUILD_STATIC_LIB)
 
 INSTALL(TARGETS ${SHARED_TARGET} DESTINATION ${CMAKE_INSTALL_PREFIX}/lib/plugins)
 # Ensure that links to the main CUDA library will be resolved.

plugins/amoeba/platforms/cuda/src/AmoebaCudaKernelFactory.cpp

@@ -6,7 +6,7 @@
  * Biological Structures at Stanford, funded under the NIH Roadmap for        *
  * Medical Research, grant U54 GM072970. See https://simtk.org.               *
  *                                                                            *
- * Portions copyright (c) 2008-2012 Stanford University and the Authors.      *
+ * Portions copyright (c) 2008-2016 Stanford University and the Authors.      *
  * Authors: Mark Friedrichs, Peter Eastman                                    *
  * Contributors:                                                              *
  *                                                                            *
@@ -33,10 +33,18 @@
 
 using namespace OpenMM;
 
+#ifdef OPENMM_BUILDING_STATIC_LIBRARY
+static void registerPlatforms() {
+#else
 extern "C" OPENMM_EXPORT void registerPlatforms() {
+#endif
 }
 
+#ifdef OPENMM_BUILDING_STATIC_LIBRARY
+static void registerKernelFactories() {
+#else
 extern "C" OPENMM_EXPORT void registerKernelFactories() {
+#endif
     try {
         Platform& platform = Platform::getPlatformByName("CUDA");
         AmoebaCudaKernelFactory* factory = new AmoebaCudaKernelFactory();

plugins/amoeba/platforms/reference/src/AmoebaReferenceKernelFactory.cpp

@@ -6,7 +6,7 @@
  * Biological Structures at Stanford, funded under the NIH Roadmap for        *
  * Medical Research, grant U54 GM072970. See https://simtk.org.               *
  *                                                                            *
- * Portions copyright (c) 2008-2013 Stanford University and the Authors.      *
+ * Portions copyright (c) 2008-2016 Stanford University and the Authors.      *
  * Authors: Mark Friedrichs, Peter Eastman                                    *
  * Contributors:                                                              *
  *                                                                            *
@@ -32,10 +32,18 @@
 
 using namespace OpenMM;
 
+#ifdef OPENMM_BUILDING_STATIC_LIBRARY
+static void registerPlatforms() {
+#else
 extern "C" OPENMM_EXPORT void registerPlatforms() {
+#endif
 }
 
+#ifdef OPENMM_BUILDING_STATIC_LIBRARY
+static void registerKernelFactories() {
+#else
 extern "C" OPENMM_EXPORT void registerKernelFactories() {
+#endif
     for (int i = 0; i < Platform::getNumPlatforms(); i++) {
         Platform& platform = Platform::getPlatform(i);
         if (dynamic_cast<ReferencePlatform*>(&platform) != NULL) {

plugins/cudacompiler/src/CudaCompilerKernelFactory.cpp

@@ -6,7 +6,7 @@
  * Biological Structures at Stanford, funded under the NIH Roadmap for        *
  * Medical Research, grant U54 GM072970. See https://simtk.org.               *
  *                                                                            *
- * Portions copyright (c) 2015 Stanford University and the Authors.           *
+ * Portions copyright (c) 2015-2016 Stanford University and the Authors.      *
  * Authors: Peter Eastman                                                     *
  * Contributors:                                                              *
  *                                                                            *
@@ -32,7 +32,11 @@
 
 using namespace OpenMM;
 
+#ifdef OPENMM_CUDACOMPILER_BUILDING_STATIC_LIBRARY
+static void registerKernelFactories() {
+#else
 extern "C" OPENMM_EXPORT_CUDACOMPILER void registerKernelFactories() {
+#endif
     try {
         // Make sure this is at least CUDA 7.0.