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tsoc
openmm
Commits
cc3c4b54
Unverified
Commit
cc3c4b54
authored
Jul 30, 2020
by
peastman
Committed by
GitHub
Jul 30, 2020
Browse files
Merge pull request #2790 from peastman/integratorparams
States can save integrator parameters
parents
03861778
16b6e4aa
Changes
22
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2 changed files
with
7 additions
and
2 deletions
+7
-2
wrappers/python/simtk/openmm/app/simulation.py
wrappers/python/simtk/openmm/app/simulation.py
+1
-1
wrappers/python/src/swig_doxygen/swig_lib/python/extend.i
wrappers/python/src/swig_doxygen/swig_lib/python/extend.i
+6
-1
No files found.
wrappers/python/simtk/openmm/app/simulation.py
View file @
cc3c4b54
...
...
@@ -312,7 +312,7 @@ class Simulation(object):
a File-like object to write the state to, or alternatively a
filename
"""
state
=
self
.
context
.
getState
(
getPositions
=
True
,
getVelocities
=
True
,
getParameters
=
True
)
state
=
self
.
context
.
getState
(
getPositions
=
True
,
getVelocities
=
True
,
getParameters
=
True
,
getIntegratorParameters
=
True
)
xml
=
mm
.
XmlSerializer
.
serialize
(
state
)
if
isinstance
(
file
,
str
):
with
open
(
file
,
'w'
)
as
f
:
...
...
wrappers/python/src/swig_doxygen/swig_lib/python/extend.i
View file @
cc3c4b54
...
...
@@ -11,7 +11,8 @@
def
getState
(
self
,
getPositions
=
False
,
getVelocities
=
False
,
getForces
=
False
,
getEnergy
=
False
,
getParameters
=
False
,
getParameterDerivatives
=
False
,
enforcePeriodicBox
=
False
,
groups
=-
1
)
:
getParameterDerivatives
=
False
,
getIntegratorParameters
=
False
,
enforcePeriodicBox
=
False
,
groups
=-
1
)
:
"""Get a State object recording the current state information stored in this context.
Parameters
...
...
@@ -28,6 +29,8 @@
whether to store context parameters in the State
getParameterDerivatives : bool=False
whether to store parameter derivatives in the State
getIntegratorParameters : bool=False
whether to store integrator parameters in the State
enforcePeriodicBox : bool=False
if false, the position of each particle will be whatever position
is stored in the Context, regardless of periodic boundary conditions.
...
...
@@ -64,6 +67,8 @@
types
+=
State
.
Parameters
if
getParameterDerivatives
:
types
+=
State
.
ParameterDerivatives
if
getIntegratorParameters
:
types
+=
State
.
IntegratorParameters
state
=
_openmm
.
Context_getState
(
self
,
types
,
enforcePeriodicBox
,
groups_mask
)
return
state
...
...
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