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Commit bd6c5aa9 authored by Rafal P. Wiewiora's avatar Rafal P. Wiewiora
Browse files

tests

parent 7e0bd506
......@@ -434,6 +434,44 @@ class AmoebaTestForceField(unittest.TestCase):
diff = norm(f1-f2)
self.assertTrue(diff < 0.1 or diff/norm(f1) < 1e-3)
def test_Wildcard(self):
"""Test that PeriodicTorsionForces using wildcard ('') for atom types / classes in the ffxml are correctly registered"""
# Use wildcards in types
xml = """
<ForceField>
<AtomTypes>
<Type name="C" class="C" element="C" mass="12.010000"/>
<Type name="O" class="O" element="O" mass="16.000000"/>
</AtomTypes>
<PeriodicTorsionForce>
<Proper type1="" type2="C" type3="C" type4="" periodicity1="2" phase1="3.141593" k1="15.167000"/>
<Improper type1="C" type2="" type3="" type4="O" periodicity1="2" phase1="3.141593" k1="43.932000"/>
</PeriodicTorsionForce>
</ForceField>"""
ff = ForceField(StringIO(xml))
self.assertEqual(len(ff._forces[0].proper), 1)
self.assertEqual(len(ff._forces[0].improper), 1)
# Use wildcards in classes
xml = """
<ForceField>
<AtomTypes>
<Type name="C" class="C" element="C" mass="12.010000"/>
<Type name="O" class="O" element="O" mass="16.000000"/>
</AtomTypes>
<PeriodicTorsionForce>
<Proper class1="" class2="C" class3="C" class4="" periodicity1="2" phase1="3.141593" k1="15.167000"/>
<Improper class1="C" class2="" class3="" class4="O" periodicity1="2" phase1="3.141593" k1="43.932000"/>
</PeriodicTorsionForce>
</ForceField>"""
ff = ForceField(StringIO(xml))
self.assertEqual(len(ff._forces[0].proper), 1)
self.assertEqual(len(ff._forces[0].improper), 1)
if __name__ == '__main__':
unittest.main()
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