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Commit bb06df2a authored by Lee-Ping Wang's avatar Lee-Ping Wang
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Change sigma=0.0 to sigma=1.0

parent 5df1def5
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Inline Side-by-side
Showing with 59 additions and 59 deletions
wrappers/python/simtk/openmm/app/data/amberfb15.xml
View file @ bb06df2a
......@@ -8019,7 +8019,7 @@
<Atom type="33" charge="0.6462" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="34" charge="-0.5554" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="35" charge="-0.6376" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="36" charge="0.4747" sigma="0.0" epsilon="0.0"/>
<Atom type="36" charge="0.4747" sigma="1.0" epsilon="0.0"/>
<Atom type="37" charge="0.5973" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="38" charge="-0.5679" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="39" charge="-0.4157" sigma="0.324999852378" epsilon="0.71128"/>
......@@ -8084,7 +8084,7 @@
<Atom type="98" charge="0.6801" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="99" charge="-0.5838" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="100" charge="-0.6511" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="101" charge="0.4641" sigma="0.0" epsilon="0.0"/>
<Atom type="101" charge="0.4641" sigma="1.0" epsilon="0.0"/>
<Atom type="102" charge="0.5973" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="103" charge="-0.5679" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="104" charge="-0.4157" sigma="0.324999852378" epsilon="0.71128"/>
......@@ -8279,7 +8279,7 @@
<Atom type="293" charge="0.2117" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="294" charge="0.0352" sigma="0.247135304412" epsilon="0.0656888"/>
<Atom type="295" charge="-0.6546" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="296" charge="0.4275" sigma="0.0" epsilon="0.0"/>
<Atom type="296" charge="0.4275" sigma="1.0" epsilon="0.0"/>
<Atom type="297" charge="0.5973" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="298" charge="-0.5679" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="299" charge="-0.4157" sigma="0.324999852378" epsilon="0.71128"/>
......@@ -8291,7 +8291,7 @@
<Atom type="305" charge="-0.2438" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="306" charge="0.0642" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="307" charge="-0.6761" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="308" charge="0.4102" sigma="0.0" epsilon="0.0"/>
<Atom type="308" charge="0.4102" sigma="1.0" epsilon="0.0"/>
<Atom type="309" charge="0.5973" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="310" charge="-0.5679" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="311" charge="-0.4157" sigma="0.324999852378" epsilon="0.71128"/>
......@@ -8330,7 +8330,7 @@
<Atom type="344" charge="0.1656" sigma="0.259964245953" epsilon="0.06276"/>
<Atom type="345" charge="0.3226" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="346" charge="-0.5579" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="347" charge="0.3992" sigma="0.0" epsilon="0.0"/>
<Atom type="347" charge="0.3992" sigma="1.0" epsilon="0.0"/>
<Atom type="348" charge="-0.2341" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="349" charge="0.1656" sigma="0.259964245953" epsilon="0.06276"/>
<Atom type="350" charge="-0.1906" sigma="0.339966950842" epsilon="0.359824"/>
......@@ -8612,7 +8612,7 @@
<Atom type="626" charge="0.1123" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="627" charge="0.0813" sigma="0.247135304412" epsilon="0.0656888"/>
<Atom type="628" charge="-0.6514" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="629" charge="0.4474" sigma="0.0" epsilon="0.0"/>
<Atom type="629" charge="0.4474" sigma="1.0" epsilon="0.0"/>
<Atom type="630" charge="0.8113" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="631" charge="-0.8132" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="632" charge="-0.8132" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -8625,7 +8625,7 @@
<Atom type="639" charge="-0.1853" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="640" charge="0.0586" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="641" charge="-0.6496" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="642" charge="0.4119" sigma="0.0" epsilon="0.0"/>
<Atom type="642" charge="0.4119" sigma="1.0" epsilon="0.0"/>
<Atom type="643" charge="0.781" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="644" charge="-0.8044" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="645" charge="-0.8044" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -8666,7 +8666,7 @@
<Atom type="680" charge="0.1673" sigma="0.259964245953" epsilon="0.06276"/>
<Atom type="681" charge="0.3395" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="682" charge="-0.5643" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="683" charge="0.4017" sigma="0.0" epsilon="0.0"/>
<Atom type="683" charge="0.4017" sigma="1.0" epsilon="0.0"/>
<Atom type="684" charge="-0.2458" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="685" charge="0.1673" sigma="0.259964245953" epsilon="0.06276"/>
<Atom type="686" charge="-0.1922" sigma="0.339966950842" epsilon="0.359824"/>
......@@ -8943,7 +8943,7 @@
<Atom type="957" charge="0.2596" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="958" charge="0.0273" sigma="0.247135304412" epsilon="0.0656888"/>
<Atom type="959" charge="-0.6714" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="960" charge="0.4239" sigma="0.0" epsilon="0.0"/>
<Atom type="960" charge="0.4239" sigma="1.0" epsilon="0.0"/>
<Atom type="961" charge="0.6163" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="962" charge="-0.5722" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="963" charge="0.1812" sigma="0.324999852378" epsilon="0.71128"/>
......@@ -8955,7 +8955,7 @@
<Atom type="969" charge="-0.2554" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="970" charge="0.0627" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="971" charge="-0.6764" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="972" charge="0.407" sigma="0.0" epsilon="0.0"/>
<Atom type="972" charge="0.407" sigma="1.0" epsilon="0.0"/>
<Atom type="973" charge="0.6163" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="974" charge="-0.5722" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="975" charge="0.1913" sigma="0.324999852378" epsilon="0.71128"/>
......@@ -8994,7 +8994,7 @@
<Atom type="1008" charge="0.165" sigma="0.259964245953" epsilon="0.06276"/>
<Atom type="1009" charge="0.3139" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="1010" charge="-0.5578" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1011" charge="0.4001" sigma="0.0" epsilon="0.0"/>
<Atom type="1011" charge="0.4001" sigma="1.0" epsilon="0.0"/>
<Atom type="1012" charge="-0.2239" sigma="0.339966950842" epsilon="0.359824"/>
<Atom type="1013" charge="0.165" sigma="0.259964245953" epsilon="0.06276"/>
<Atom type="1014" charge="-0.2002" sigma="0.339966950842" epsilon="0.359824"/>
......@@ -9071,8 +9071,8 @@
<Atom type="1085" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1086" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1087" charge="-0.6549" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1088" charge="0.4396" sigma="0.0" epsilon="0.0"/>
<Atom type="1089" charge="0.4422" sigma="0.0" epsilon="0.0"/>
<Atom type="1088" charge="0.4396" sigma="1.0" epsilon="0.0"/>
<Atom type="1089" charge="0.4422" sigma="1.0" epsilon="0.0"/>
<Atom type="1090" charge="-0.6318" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1091" charge="-0.0069" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1092" charge="0.0754" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9099,7 +9099,7 @@
<Atom type="1113" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1114" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1115" charge="-0.5232" sigma="0.300001234347" epsilon="0.71128"/>
<Atom type="1116" charge="0.4422" sigma="0.0" epsilon="0.0"/>
<Atom type="1116" charge="0.4422" sigma="1.0" epsilon="0.0"/>
<Atom type="1117" charge="-0.6318" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1118" charge="-0.0069" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1119" charge="0.0754" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9126,7 +9126,7 @@
<Atom type="1140" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1141" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1142" charge="-0.6549" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1143" charge="0.4396" sigma="0.0" epsilon="0.0"/>
<Atom type="1143" charge="0.4396" sigma="1.0" epsilon="0.0"/>
<Atom type="1144" charge="1.1659" sigma="0.374177461619" epsilon="0.8368"/>
<Atom type="1145" charge="-0.7761" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="1146" charge="-0.7761" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9181,8 +9181,8 @@
<Atom type="1195" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1196" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1197" charge="-0.6549" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1198" charge="0.4396" sigma="0.0" epsilon="0.0"/>
<Atom type="1199" charge="0.4422" sigma="0.0" epsilon="0.0"/>
<Atom type="1198" charge="0.4396" sigma="1.0" epsilon="0.0"/>
<Atom type="1199" charge="0.4422" sigma="1.0" epsilon="0.0"/>
<Atom type="1200" charge="-0.6318" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1201" charge="-0.0069" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1202" charge="0.0754" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9207,7 +9207,7 @@
<Atom type="1221" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1222" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1223" charge="-0.5232" sigma="0.300001234347" epsilon="0.71128"/>
<Atom type="1224" charge="0.4422" sigma="0.0" epsilon="0.0"/>
<Atom type="1224" charge="0.4422" sigma="1.0" epsilon="0.0"/>
<Atom type="1225" charge="-0.6318" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1226" charge="-0.0069" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1227" charge="0.0754" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9232,7 +9232,7 @@
<Atom type="1246" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1247" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1248" charge="-0.6549" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1249" charge="0.4396" sigma="0.0" epsilon="0.0"/>
<Atom type="1249" charge="0.4396" sigma="1.0" epsilon="0.0"/>
<Atom type="1250" charge="1.1659" sigma="0.374177461619" epsilon="0.8368"/>
<Atom type="1251" charge="-0.7761" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="1252" charge="-0.7761" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9293,8 +9293,8 @@
<Atom type="1307" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1308" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1309" charge="-0.6549" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1310" charge="0.4396" sigma="0.0" epsilon="0.0"/>
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<Atom type="1310" charge="0.4396" sigma="1.0" epsilon="0.0"/>
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<Atom type="1312" charge="-0.6318" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1313" charge="-0.0069" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1314" charge="0.0754" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9322,7 +9322,7 @@
<Atom type="1336" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1337" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1338" charge="-0.5232" sigma="0.300001234347" epsilon="0.71128"/>
<Atom type="1339" charge="0.4422" sigma="0.0" epsilon="0.0"/>
<Atom type="1339" charge="0.4422" sigma="1.0" epsilon="0.0"/>
<Atom type="1340" charge="-0.6318" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1341" charge="-0.0069" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1342" charge="0.0754" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9350,7 +9350,7 @@
<Atom type="1364" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1365" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1366" charge="-0.6549" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1367" charge="0.4396" sigma="0.0" epsilon="0.0"/>
<Atom type="1367" charge="0.4396" sigma="1.0" epsilon="0.0"/>
<Atom type="1368" charge="1.1659" sigma="0.374177461619" epsilon="0.8368"/>
<Atom type="1369" charge="-0.7761" sigma="0.295992190115" epsilon="0.87864"/>
<Atom type="1370" charge="-0.7761" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9407,8 +9407,8 @@
<Atom type="1421" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1422" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1423" charge="-0.6549" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1424" charge="0.4396" sigma="0.0" epsilon="0.0"/>
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<Atom type="1424" charge="0.4396" sigma="1.0" epsilon="0.0"/>
<Atom type="1425" charge="0.4422" sigma="1.0" epsilon="0.0"/>
<Atom type="1426" charge="-0.6318" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1427" charge="-0.0069" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1428" charge="0.0754" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9434,7 +9434,7 @@
<Atom type="1448" charge="-0.0854" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1449" charge="0.0718" sigma="0.264953278775" epsilon="0.0656888"/>
<Atom type="1450" charge="-0.5232" sigma="0.300001234347" epsilon="0.71128"/>
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<Atom type="1454" charge="0.0754" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9460,7 +9460,7 @@
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<Atom type="1480" charge="-0.776" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9490,7 +9490,7 @@
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<Atom type="1505" charge="0.0972" sigma="0.247135304412" epsilon="0.0656888"/>
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<Atom type="1510" charge="-0.776" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9521,10 +9521,10 @@
<Atom type="1535" charge="0.067" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1536" charge="0.0972" sigma="0.247135304412" epsilon="0.0656888"/>
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<Atom type="1544" charge="0.0679" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9551,9 +9551,9 @@
<Atom type="1565" charge="0.067" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1566" charge="0.0972" sigma="0.247135304412" epsilon="0.0656888"/>
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<Atom type="1568" charge="0.4186" sigma="1.0" epsilon="0.0"/>
<Atom type="1569" charge="-0.5246" sigma="0.300001234347" epsilon="0.71128"/>
<Atom type="1570" charge="0.4295" sigma="0.0" epsilon="0.0"/>
<Atom type="1570" charge="0.4295" sigma="1.0" epsilon="0.0"/>
<Atom type="1571" charge="-0.6223" sigma="0.306647338784" epsilon="0.8803136"/>
<Atom type="1572" charge="0.0558" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1573" charge="0.0679" sigma="0.247135304412" epsilon="0.0656888"/>
......@@ -9580,9 +9580,9 @@
<Atom type="1594" charge="0.067" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1595" charge="0.0972" sigma="0.247135304412" epsilon="0.0656888"/>
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......@@ -9610,7 +9610,7 @@
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......@@ -9639,10 +9639,10 @@
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......@@ -9667,9 +9667,9 @@
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......@@ -9694,9 +9694,9 @@
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<Atom type="1716" charge="-0.776" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9727,7 +9727,7 @@
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<Atom type="1747" charge="-0.776" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9759,10 +9759,10 @@
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......@@ -9790,9 +9790,9 @@
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......@@ -9820,9 +9820,9 @@
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<Atom type="1842" charge="-0.776" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9850,7 +9850,7 @@
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<Atom type="1870" charge="-0.776" sigma="0.295992190115" epsilon="0.87864"/>
......@@ -9879,10 +9879,10 @@
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......@@ -9907,9 +9907,9 @@
<Atom type="1921" charge="0.067" sigma="0.339966950842" epsilon="0.4577296"/>
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......@@ -9934,9 +9934,9 @@
<Atom type="1948" charge="0.067" sigma="0.339966950842" epsilon="0.4577296"/>
<Atom type="1949" charge="0.0972" sigma="0.247135304412" epsilon="0.0656888"/>
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<Atom type="1954" charge="-1.0" sigma="0.440103966761" epsilon="0.4184"/>
<Atom type="1955" charge="1.0" sigma="0.604920229617" epsilon="0.0003372304"/>
<Atom type="1956" charge="1.0" sigma="0.473601758563" epsilon="0.001372352"/>
......
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