Added license notice to Python files

wrappers/python/simtk/unit/prefix.py

@@ -2,6 +2,32 @@
 """
 Module simtk.unit.prefix
 
+This is part of the OpenMM molecular simulation toolkit originating from
+Simbios, the NIH National Center for Physics-Based Simulation of
+Biological Structures at Stanford, funded under the NIH Roadmap for
+Medical Research, grant U54 GM072970. See https://simtk.org.
+
+Portions copyright (c) 2012 Stanford University and the Authors.
+Authors: Christopher M. Bruns
+Contributors: Peter Eastman
+
+Permission is hereby granted, free of charge, to any person obtaining a 
+copy of this software and associated documentation files (the "Software"),
+to deal in the Software without restriction, including without limitation
+the rights to use, copy, modify, merge, publish, distribute, sublicense,
+and/or sell copies of the Software, and to permit persons to whom the
+Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
+OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
+USE OR OTHER DEALINGS IN THE SOFTWARE.
 """
 
 __author__ = "Christopher M. Bruns"

wrappers/python/simtk/unit/quantity.py

@@ -37,6 +37,35 @@ Some features of this implementation:
 Two possible enhancements that have not been implemented are
   1) Include uncertainties with propagation of errors
   2) Incorporate offsets for celsius <-> kelvin conversion
+
+
+
+This is part of the OpenMM molecular simulation toolkit originating from
+Simbios, the NIH National Center for Physics-Based Simulation of
+Biological Structures at Stanford, funded under the NIH Roadmap for
+Medical Research, grant U54 GM072970. See https://simtk.org.
+
+Portions copyright (c) 2012 Stanford University and the Authors.
+Authors: Christopher M. Bruns
+Contributors: Peter Eastman
+
+Permission is hereby granted, free of charge, to any person obtaining a 
+copy of this software and associated documentation files (the "Software"),
+to deal in the Software without restriction, including without limitation
+the rights to use, copy, modify, merge, publish, distribute, sublicense,
+and/or sell copies of the Software, and to permit persons to whom the
+Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
+OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
+USE OR OTHER DEALINGS IN THE SOFTWARE.
 """
 
 from __future__ import division

wrappers/python/simtk/unit/standard_dimensions.py

@@ -3,6 +3,33 @@
 Module simtk.unit.standard_dimensions
 
 Definition of principal dimensions: mass, length, time, etc.
+
+This is part of the OpenMM molecular simulation toolkit originating from
+Simbios, the NIH National Center for Physics-Based Simulation of
+Biological Structures at Stanford, funded under the NIH Roadmap for
+Medical Research, grant U54 GM072970. See https://simtk.org.
+
+Portions copyright (c) 2012 Stanford University and the Authors.
+Authors: Christopher M. Bruns
+Contributors: Peter Eastman
+
+Permission is hereby granted, free of charge, to any person obtaining a 
+copy of this software and associated documentation files (the "Software"),
+to deal in the Software without restriction, including without limitation
+the rights to use, copy, modify, merge, publish, distribute, sublicense,
+and/or sell copies of the Software, and to permit persons to whom the
+Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
+OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
+USE OR OTHER DEALINGS IN THE SOFTWARE.
 """
 
 __author__ = "Christopher M. Bruns"

wrappers/python/simtk/unit/unit.py

@@ -3,6 +3,33 @@
 Module simtk.unit
 
 Contains classes Unit and ScaledUnit.
+
+This is part of the OpenMM molecular simulation toolkit originating from
+Simbios, the NIH National Center for Physics-Based Simulation of
+Biological Structures at Stanford, funded under the NIH Roadmap for
+Medical Research, grant U54 GM072970. See https://simtk.org.
+
+Portions copyright (c) 2012 Stanford University and the Authors.
+Authors: Christopher M. Bruns
+Contributors: Peter Eastman
+
+Permission is hereby granted, free of charge, to any person obtaining a 
+copy of this software and associated documentation files (the "Software"),
+to deal in the Software without restriction, including without limitation
+the rights to use, copy, modify, merge, publish, distribute, sublicense,
+and/or sell copies of the Software, and to permit persons to whom the
+Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
+OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
+USE OR OTHER DEALINGS IN THE SOFTWARE.
 """
 
 from __future__ import division

wrappers/python/simtk/unit/unit_definitions.py

@@ -2,6 +2,32 @@
 """
 Module simtk.unit.unit_definitions
 
+This is part of the OpenMM molecular simulation toolkit originating from
+Simbios, the NIH National Center for Physics-Based Simulation of
+Biological Structures at Stanford, funded under the NIH Roadmap for
+Medical Research, grant U54 GM072970. See https://simtk.org.
+
+Portions copyright (c) 2012 Stanford University and the Authors.
+Authors: Christopher M. Bruns
+Contributors: Peter Eastman
+
+Permission is hereby granted, free of charge, to any person obtaining a 
+copy of this software and associated documentation files (the "Software"),
+to deal in the Software without restriction, including without limitation
+the rights to use, copy, modify, merge, publish, distribute, sublicense,
+and/or sell copies of the Software, and to permit persons to whom the
+Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
+OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
+USE OR OTHER DEALINGS IN THE SOFTWARE.
 """
 
 from __future__ import division

wrappers/python/simtk/unit/unit_math.py

@@ -3,6 +3,33 @@
 Module simtk.unit.math
 
 Arithmetic methods on Quantities and Units
+
+This is part of the OpenMM molecular simulation toolkit originating from
+Simbios, the NIH National Center for Physics-Based Simulation of
+Biological Structures at Stanford, funded under the NIH Roadmap for
+Medical Research, grant U54 GM072970. See https://simtk.org.
+
+Portions copyright (c) 2012 Stanford University and the Authors.
+Authors: Christopher M. Bruns
+Contributors: Peter Eastman
+
+Permission is hereby granted, free of charge, to any person obtaining a 
+copy of this software and associated documentation files (the "Software"),
+to deal in the Software without restriction, including without limitation
+the rights to use, copy, modify, merge, publish, distribute, sublicense,
+and/or sell copies of the Software, and to permit persons to whom the
+Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
+OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
+USE OR OTHER DEALINGS IN THE SOFTWARE.
 """
 
 from __future__ import division

wrappers/python/simtk/unit/unit_operators.py

@@ -16,6 +16,35 @@ might want to make new dimensions for, say, "currency" or
 Two possible enhancements that have not been implemented are
   1) Include uncertainties with propagation of errors
   2) Incorporate offsets for celsius <-> kelvin conversion
+
+
+
+This is part of the OpenMM molecular simulation toolkit originating from
+Simbios, the NIH National Center for Physics-Based Simulation of
+Biological Structures at Stanford, funded under the NIH Roadmap for
+Medical Research, grant U54 GM072970. See https://simtk.org.
+
+Portions copyright (c) 2012 Stanford University and the Authors.
+Authors: Christopher M. Bruns
+Contributors: Peter Eastman
+
+Permission is hereby granted, free of charge, to any person obtaining a 
+copy of this software and associated documentation files (the "Software"),
+to deal in the Software without restriction, including without limitation
+the rights to use, copy, modify, merge, publish, distribute, sublicense,
+and/or sell copies of the Software, and to permit persons to whom the
+Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
+OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
+USE OR OTHER DEALINGS IN THE SOFTWARE.
 """
 
 __author__ = "Christopher M. Bruns"