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tsoc
openmm
Commits
b256555e
"wrappers/vscode:/vscode.git/clone" did not exist on "4442c09503c16634e062819587469335e1dc3f2d"
Commit
b256555e
authored
Dec 12, 2012
by
Peter Eastman
Browse files
Fixed compilation errors on Windows
parent
59b69776
Changes
72
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12 changed files
with
146 additions
and
65 deletions
+146
-65
plugins/amoeba/serialization/include/openmm/serialization/AmoebaStretchBendForceProxy.h
...nclude/openmm/serialization/AmoebaStretchBendForceProxy.h
+2
-2
plugins/amoeba/serialization/include/openmm/serialization/AmoebaTorsionTorsionForceProxy.h
...ude/openmm/serialization/AmoebaTorsionTorsionForceProxy.h
+2
-2
plugins/amoeba/serialization/include/openmm/serialization/AmoebaVdwForceProxy.h
...zation/include/openmm/serialization/AmoebaVdwForceProxy.h
+2
-2
plugins/amoeba/serialization/include/openmm/serialization/AmoebaWcaDispersionForceProxy.h
...lude/openmm/serialization/AmoebaWcaDispersionForceProxy.h
+2
-2
plugins/amoeba/serialization/include/openmm/serialization/internal/windowsExportAmoebaSerialization.h
...serialization/internal/windowsExportAmoebaSerialization.h
+41
-0
plugins/amoeba/wrappers/CWrapper_Header.xslt
plugins/amoeba/wrappers/CWrapper_Header.xslt
+15
-15
plugins/amoeba/wrappers/CWrapper_Source.xslt
plugins/amoeba/wrappers/CWrapper_Source.xslt
+20
-20
plugins/amoeba/wrappers/FortranWrapper_Source.xslt
plugins/amoeba/wrappers/FortranWrapper_Source.xslt
+17
-17
plugins/rpmd/CMakeLists.txt
plugins/rpmd/CMakeLists.txt
+2
-2
plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h
plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h
+2
-2
plugins/rpmd/openmmapi/include/openmm/internal/windowsExportRpmd.h
...pmd/openmmapi/include/openmm/internal/windowsExportRpmd.h
+41
-0
plugins/rpmd/platforms/reference/src/ReferenceRpmdKernelFactory.cpp
...md/platforms/reference/src/ReferenceRpmdKernelFactory.cpp
+0
-1
No files found.
plugins/amoeba/serialization/include/openmm/serialization/AmoebaStretchBendForceProxy.h
View file @
b256555e
...
...
@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "openmm/internal/windowsExport.h"
#include "openmm/
serialization/
internal/windowsExport
AmoebaSerialization
.h"
#include "openmm/serialization/SerializationProxy.h"
namespace
OpenMM
{
...
...
@@ -41,7 +41,7 @@ namespace OpenMM {
* This is a proxy for serializing AmoebaStretchBendForce objects.
*/
class
OPENMM_EXPORT
AmoebaStretchBendForceProxy
:
public
SerializationProxy
{
class
OPENMM_EXPORT
_AMOEBA_SERIALIZATION
AmoebaStretchBendForceProxy
:
public
SerializationProxy
{
public:
AmoebaStretchBendForceProxy
();
void
serialize
(
const
void
*
object
,
SerializationNode
&
node
)
const
;
...
...
plugins/amoeba/serialization/include/openmm/serialization/AmoebaTorsionTorsionForceProxy.h
View file @
b256555e
...
...
@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "openmm/internal/windowsExport.h"
#include "openmm/
serialization/
internal/windowsExport
AmoebaSerialization
.h"
#include "openmm/serialization/SerializationProxy.h"
namespace
OpenMM
{
...
...
@@ -41,7 +41,7 @@ namespace OpenMM {
* This is a proxy for serializing AmoebaTorsionTorsionForce objects.
*/
class
OPENMM_EXPORT
AmoebaTorsionTorsionForceProxy
:
public
SerializationProxy
{
class
OPENMM_EXPORT
_AMOEBA_SERIALIZATION
AmoebaTorsionTorsionForceProxy
:
public
SerializationProxy
{
public:
AmoebaTorsionTorsionForceProxy
();
void
serialize
(
const
void
*
object
,
SerializationNode
&
node
)
const
;
...
...
plugins/amoeba/serialization/include/openmm/serialization/AmoebaVdwForceProxy.h
View file @
b256555e
...
...
@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "openmm/internal/windowsExport.h"
#include "openmm/
serialization/
internal/windowsExport
AmoebaSerialization
.h"
#include "openmm/serialization/SerializationProxy.h"
namespace
OpenMM
{
...
...
@@ -41,7 +41,7 @@ namespace OpenMM {
* This is a proxy for serializing AmoebaVdwForce objects.
*/
class
OPENMM_EXPORT
AmoebaVdwForceProxy
:
public
SerializationProxy
{
class
OPENMM_EXPORT
_AMOEBA_SERIALIZATION
AmoebaVdwForceProxy
:
public
SerializationProxy
{
public:
AmoebaVdwForceProxy
();
void
serialize
(
const
void
*
object
,
SerializationNode
&
node
)
const
;
...
...
plugins/amoeba/serialization/include/openmm/serialization/AmoebaWcaDispersionForceProxy.h
View file @
b256555e
...
...
@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "openmm/internal/windowsExport.h"
#include "openmm/
serialization/
internal/windowsExport
AmoebaSerialization
.h"
#include "openmm/serialization/SerializationProxy.h"
namespace
OpenMM
{
...
...
@@ -41,7 +41,7 @@ namespace OpenMM {
* This is a proxy for serializing AmoebaWcaDispersionForce objects.
*/
class
OPENMM_EXPORT
AmoebaWcaDispersionForceProxy
:
public
SerializationProxy
{
class
OPENMM_EXPORT
_AMOEBA_SERIALIZATION
AmoebaWcaDispersionForceProxy
:
public
SerializationProxy
{
public:
AmoebaWcaDispersionForceProxy
();
void
serialize
(
const
void
*
object
,
SerializationNode
&
node
)
const
;
...
...
plugins/amoeba/serialization/include/openmm/serialization/internal/windowsExportAmoebaSerialization.h
0 → 100644
View file @
b256555e
#ifndef OPENMM_WINDOWSEXPORTAMOEBASERIALIZATION_H_
#define OPENMM_WINDOWSEXPORTAMOEBASERIALIZATION_H_
/*
* Shared libraries are messy in Visual Studio. We have to distinguish three
* cases:
* (1) this header is being used to build the OpenMM shared library
* (dllexport)
* (2) this header is being used by a *client* of the OpenMM shared
* library (dllimport)
* (3) we are building the OpenMM static library, or the client is
* being compiled with the expectation of linking with the
* OpenMM static library (nothing special needed)
* In the CMake script for building this library, we define one of the symbols
* OPENMM_AMOEBA_SERIALIZATION_BUILDING_{SHARED|STATIC}_LIBRARY
* Client code normally has no special symbol defined, in which case we'll
* assume it wants to use the shared library. However, if the client defines
* the symbol OPENMM_USE_STATIC_LIBRARIES we'll suppress the dllimport so
* that the client code can be linked with static libraries. Note that
* the client symbol is not library dependent, while the library symbols
* affect only the OpenMM library, meaning that other libraries can
* be clients of this one. However, we are assuming all-static or all-shared.
*/
#ifdef _MSC_VER
// We don't want to hear about how sprintf is "unsafe".
#pragma warning(disable:4996)
// Keep MS VC++ quiet about lack of dll export of private members.
#pragma warning(disable:4251)
#if defined(OPENMM_AMOEBA_SERIALIZATION_BUILDING_SHARED_LIBRARY)
#define OPENMM_EXPORT_AMOEBA_SERIALIZATION __declspec(dllexport)
#elif defined(OPENMM_AMOEBA_SERIALIZATION_BUILDING_STATIC_LIBRARY) || defined(OPENMM_AMOEBA_SERIALIZATION_USE_STATIC_LIBRARIES)
#define OPENMM_EXPORT_AMOEBA_SERIALIZATION
#else
#define OPENMM_EXPORT_AMOEBA_SERIALIZATION __declspec(dllimport) // i.e., a client of a shared library
#endif
#else
#define OPENMM_EXPORT_AMOEBA_SERIALIZATION // Linux, Mac
#endif
#endif // OPENMM_WINDOWSEXPORTAMOEBASERIALIZATION_H_
plugins/amoeba/wrappers/CWrapper_Header.xslt
View file @
b256555e
...
...
@@ -32,8 +32,8 @@
#ifndef AMOEBA_OPENMM_CWRAPPER_H_
#define AMOEBA_OPENMM_CWRAPPER_H_
#ifndef OPENMM_EXPORT
#define OPENMM_EXPORT
#ifndef OPENMM_EXPORT
_AMOEBA
#define OPENMM_EXPORT
_AMOEBA
#endif
/* Global Constants */
...
...
@@ -54,9 +54,9 @@ extern "C" {
#endif
/* OpenMM_3D_DoubleArray */
OPENMM_EXPORT OpenMM_3D_DoubleArray* OpenMM_3D_DoubleArray_create(int size1, int size2, int size3);
OPENMM_EXPORT void OpenMM_3D_DoubleArray_set(OpenMM_3D_DoubleArray* array, int index1, int index2, OpenMM_DoubleArray* values);
OPENMM_EXPORT void OpenMM_3D_DoubleArray_destroy( OpenMM_3D_DoubleArray* array);
OPENMM_EXPORT
_AMOEBA
OpenMM_3D_DoubleArray* OpenMM_3D_DoubleArray_create(int size1, int size2, int size3);
OPENMM_EXPORT
_AMOEBA
void OpenMM_3D_DoubleArray_set(OpenMM_3D_DoubleArray* array, int index1, int index2, OpenMM_DoubleArray* values);
OPENMM_EXPORT
_AMOEBA
void OpenMM_3D_DoubleArray_destroy( OpenMM_3D_DoubleArray* array);
<xsl:call-template
name=
"primitive_array"
>
<xsl:with-param
name=
"element_type"
select=
"'int'"
/>
...
...
@@ -80,13 +80,13 @@ OPENMM_EXPORT void OpenMM_3D_DoubleArray_destroy( OpenMM_3D_DoubleArray* array);
<xsl:param
name=
"element_type"
/>
<xsl:param
name=
"name"
/>
/*
<xsl:value-of
select=
"$name"
/>
*/
extern OPENMM_EXPORT
<xsl:value-of
select=
"$name"
/>
*
<xsl:value-of
select=
"$name"
/>
_create(int size);
extern OPENMM_EXPORT void
<xsl:value-of
select=
"$name"
/>
_destroy(
<xsl:value-of
select=
"$name"
/>
* array);
extern OPENMM_EXPORT int
<xsl:value-of
select=
"$name"
/>
_getSize(const
<xsl:value-of
select=
"$name"
/>
* array);
extern OPENMM_EXPORT void
<xsl:value-of
select=
"$name"
/>
_resize(
<xsl:value-of
select=
"$name"
/>
* array, int size);
extern OPENMM_EXPORT void
<xsl:value-of
select=
"$name"
/>
_append(
<xsl:value-of
select=
"$name"
/>
* array,
<xsl:value-of
select=
"$element_type"
/>
value);
extern OPENMM_EXPORT void
<xsl:value-of
select=
"$name"
/>
_set(
<xsl:value-of
select=
"$name"
/>
* array, int index,
<xsl:value-of
select=
"$element_type"
/>
value);
extern OPENMM_EXPORT
<xsl:value-of
select=
"concat($element_type, ' ', $name)"
/>
_get(const
<xsl:value-of
select=
"$name"
/>
* array, int index);
extern OPENMM_EXPORT
_AMOEBA
<xsl:value-of
select=
"$name"
/>
*
<xsl:value-of
select=
"$name"
/>
_create(int size);
extern OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name"
/>
_destroy(
<xsl:value-of
select=
"$name"
/>
* array);
extern OPENMM_EXPORT
_AMOEBA
int
<xsl:value-of
select=
"$name"
/>
_getSize(const
<xsl:value-of
select=
"$name"
/>
* array);
extern OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name"
/>
_resize(
<xsl:value-of
select=
"$name"
/>
* array, int size);
extern OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name"
/>
_append(
<xsl:value-of
select=
"$name"
/>
* array,
<xsl:value-of
select=
"$element_type"
/>
value);
extern OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name"
/>
_set(
<xsl:value-of
select=
"$name"
/>
* array, int index,
<xsl:value-of
select=
"$element_type"
/>
value);
extern OPENMM_EXPORT
_AMOEBA
<xsl:value-of
select=
"concat($element_type, ' ', $name)"
/>
_get(const
<xsl:value-of
select=
"$name"
/>
* array, int index);
</xsl:template>
<!-- Print out information for a class -->
...
...
@@ -110,7 +110,7 @@ extern OPENMM_EXPORT <xsl:value-of select="concat($element_type, ' ', $name)"/>_
</xsl:call-template>
</xsl:for-each>
</xsl:if>
extern OPENMM_EXPORT void OpenMM_
<xsl:value-of
select=
"concat(@name, '_destroy(OpenMM_', @name, '* target);')"
/>
extern OPENMM_EXPORT
_AMOEBA
void OpenMM_
<xsl:value-of
select=
"concat(@name, '_destroy(OpenMM_', @name, '* target);')"
/>
<!-- Methods -->
<xsl:variable
name=
"methods"
select=
"/GCC_XML/Method[@context=$class_id and @access='public']"
/>
<xsl:for-each
select=
"$methods"
>
...
...
@@ -143,7 +143,7 @@ typedef enum {
<!-- Print out the declaration for a constructor -->
<xsl:template
name=
"constructor"
>
<xsl:param
name=
"suffix"
/>
extern OPENMM_EXPORT OpenMM_
<xsl:value-of
select=
"concat(@name, '* OpenMM_', @name, '_create', $suffix, '(')"
/>
extern OPENMM_EXPORT
_AMOEBA
OpenMM_
<xsl:value-of
select=
"concat(@name, '* OpenMM_', @name, '_create', $suffix, '(')"
/>
<xsl:for-each
select=
"Argument"
>
<xsl:if
test=
"position() > 1"
>
,
</xsl:if>
<xsl:call-template
name=
"wrap_type"
><xsl:with-param
name=
"type_id"
select=
"@type"
/></xsl:call-template>
...
...
@@ -155,7 +155,7 @@ extern OPENMM_EXPORT OpenMM_<xsl:value-of select="concat(@name, '* OpenMM_', @na
<!-- Print out the declaration for a method -->
<xsl:template
name=
"method"
>
<xsl:param
name=
"class_name"
/>
extern OPENMM_EXPORT
<xsl:call-template
name=
"wrap_type"
><xsl:with-param
name=
"type_id"
select=
"@returns"
/></xsl:call-template><xsl:value-of
select=
"concat(' OpenMM_', $class_name, '_', @name, '(')"
/>
extern OPENMM_EXPORT
_AMOEBA
<xsl:call-template
name=
"wrap_type"
><xsl:with-param
name=
"type_id"
select=
"@returns"
/></xsl:call-template><xsl:value-of
select=
"concat(' OpenMM_', $class_name, '_', @name, '(')"
/>
<xsl:if
test=
"not(@static='1')"
>
<xsl:if
test=
"@const='1'"
>
<xsl:value-of
select=
"'const '"
/>
...
...
plugins/amoeba/wrappers/CWrapper_Source.xslt
View file @
b256555e
...
...
@@ -49,26 +49,26 @@ using namespace std;
extern "C" {
/* OpenMM_2D_IntArray */
OPENMM_EXPORT OpenMM_2D_IntArray* OpenMM_2D_IntArray_create(int size) {
OPENMM_EXPORT
_AMOEBA
OpenMM_2D_IntArray* OpenMM_2D_IntArray_create(int size) {
return reinterpret_cast
<
OpenMM_2D_IntArray*
>
(new vector
<
vector
<
int
>
>
(size));
}
OPENMM_EXPORT void OpenMM_2D_IntArray_destroy(OpenMM_2D_IntArray* array) {
OPENMM_EXPORT
_AMOEBA
void OpenMM_2D_IntArray_destroy(OpenMM_2D_IntArray* array) {
delete reinterpret_cast
<
vector
<
vector
<
int
>
>
*
>
(array);
}
OPENMM_EXPORT int OpenMM_2D_IntArray_getSize(const OpenMM_2D_IntArray* array) {
OPENMM_EXPORT
_AMOEBA
int OpenMM_2D_IntArray_getSize(const OpenMM_2D_IntArray* array) {
return reinterpret_cast
<
const vector
<
vector
<
int
>
>
*
>
(array)->size();
}
OPENMM_EXPORT void OpenMM_2D_IntArray_resize(OpenMM_2D_IntArray* array, int size) {
OPENMM_EXPORT
_AMOEBA
void OpenMM_2D_IntArray_resize(OpenMM_2D_IntArray* array, int size) {
reinterpret_cast
<
vector
<
vector
<
int
>
>
*
>
(array)->resize(size);
}
OPENMM_EXPORT void OpenMM_2D_IntArray_append(OpenMM_2D_IntArray* array, int index1, int value ) {
OPENMM_EXPORT
_AMOEBA
void OpenMM_2D_IntArray_append(OpenMM_2D_IntArray* array, int index1, int value ) {
vector
<
vector
<
int
>
>
* array2DInt = reinterpret_cast
<
vector
<
vector
<
int
>
>
*
>
(array);
if( array2DInt->size()
<
= index1 ){
array2DInt->resize( index1+1 );
}
(*array2DInt)[index1].push_back( value );
}
OPENMM_EXPORT void OpenMM_2D_IntArray_set(OpenMM_2D_IntArray* array, int index1, int index2, int value) {
OPENMM_EXPORT
_AMOEBA
void OpenMM_2D_IntArray_set(OpenMM_2D_IntArray* array, int index1, int index2, int value) {
vector
<
vector
<
int
>
>
* array2DInt = reinterpret_cast
<
vector
<
vector
<
int
>
>
*
>
(array);
if( array2DInt->size()
<
= index1 ){
array2DInt->resize( index1+1 );
...
...
@@ -78,7 +78,7 @@ OPENMM_EXPORT void OpenMM_2D_IntArray_set(OpenMM_2D_IntArray* array, int index1,
}
(*array2DInt)[index1][index2] = value;
}
OPENMM_EXPORT void OpenMM_2D_IntArray_get(const OpenMM_2D_IntArray* array, int index1, int index2, int* value) {
OPENMM_EXPORT
_AMOEBA
void OpenMM_2D_IntArray_get(const OpenMM_2D_IntArray* array, int index1, int index2, int* value) {
const vector
<
vector
<
int
>
>
* array2DInt = reinterpret_cast
<
const vector
<
vector
<
int
>
>
*
>
(array);
if ( array2DInt->size()
<
= index1 )
throw OpenMMException("OpenMM_2D_IntArray_get: first index out of range.");
...
...
@@ -89,7 +89,7 @@ OPENMM_EXPORT void OpenMM_2D_IntArray_get(const OpenMM_2D_IntArray* array, int i
}
/* OpenMM_3D_DoubleArray */
OPENMM_EXPORT OpenMM_3D_DoubleArray* OpenMM_3D_DoubleArray_create(int size1, int size2, int size3) {
OPENMM_EXPORT
_AMOEBA
OpenMM_3D_DoubleArray* OpenMM_3D_DoubleArray_create(int size1, int size2, int size3) {
int ii, jj;
std::vector
<
std::vector
<
std::vector
<
double
>
>
>
* v3D_Array = new std::vector
<
std::vector
<
std::vector
<
double
>
>
>
(size1);
...
...
@@ -102,7 +102,7 @@ OPENMM_EXPORT OpenMM_3D_DoubleArray* OpenMM_3D_DoubleArray_create(int size1, int
return reinterpret_cast
<
OpenMM_3D_DoubleArray*
>
(v3D_Array);
}
OPENMM_EXPORT void OpenMM_3D_DoubleArray_set(OpenMM_3D_DoubleArray* array, int index1, int index2, OpenMM_DoubleArray* values) {
OPENMM_EXPORT
_AMOEBA
void OpenMM_3D_DoubleArray_set(OpenMM_3D_DoubleArray* array, int index1, int index2, OpenMM_DoubleArray* values) {
unsigned int ii;
std::vector
<
std::vector
<
std::vector
<
double
>
>
>
* v3D_Array = reinterpret_cast
<
std::vector
<
std::vector
<
std::vector
<
double
>
>
>
*
>
(array);
std::vector
<
double
>
* value_array = reinterpret_cast
<
std::vector
<
double
>
*
>
(values);
...
...
@@ -111,7 +111,7 @@ OPENMM_EXPORT void OpenMM_3D_DoubleArray_set(OpenMM_3D_DoubleArray* array, int i
}
}
OPENMM_EXPORT void OpenMM_3D_DoubleArray_destroy( OpenMM_3D_DoubleArray* array) {
OPENMM_EXPORT
_AMOEBA
void OpenMM_3D_DoubleArray_destroy( OpenMM_3D_DoubleArray* array) {
delete reinterpret_cast
<
std::vector
<
std::vector
<
std::vector
<
double
>
>
>
*
>
(array);
}
...
...
@@ -134,25 +134,25 @@ OPENMM_EXPORT void OpenMM_3D_DoubleArray_destroy( OpenMM_3D_DoubleArray* array)
<xsl:param
name=
"element_type"
/>
<xsl:param
name=
"name"
/>
/*
<xsl:value-of
select=
"$name"
/>
*/
OPENMM_EXPORT
<xsl:value-of
select=
"$name"
/>
*
<xsl:value-of
select=
"$name"
/>
_create(int size) {
OPENMM_EXPORT
_AMOEBA
<xsl:value-of
select=
"$name"
/>
*
<xsl:value-of
select=
"$name"
/>
_create(int size) {
return reinterpret_cast
<
<xsl:value-of
select=
"$name"
/>
*
>
(new vector
<
<xsl:value-of
select=
"$element_type"
/>
>
(size));
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name"
/>
_destroy(
<xsl:value-of
select=
"$name"
/>
* array) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name"
/>
_destroy(
<xsl:value-of
select=
"$name"
/>
* array) {
delete reinterpret_cast
<
vector
<
<xsl:value-of
select=
"$element_type"
/>
>
*
>
(array);
}
OPENMM_EXPORT int
<xsl:value-of
select=
"$name"
/>
_getSize(const
<xsl:value-of
select=
"$name"
/>
* array) {
OPENMM_EXPORT
_AMOEBA
int
<xsl:value-of
select=
"$name"
/>
_getSize(const
<xsl:value-of
select=
"$name"
/>
* array) {
return reinterpret_cast
<
const vector
<
<xsl:value-of
select=
"$element_type"
/>
>
*
>
(array)->size();
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name"
/>
_resize(
<xsl:value-of
select=
"$name"
/>
* array, int size) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name"
/>
_resize(
<xsl:value-of
select=
"$name"
/>
* array, int size) {
reinterpret_cast
<
vector
<
<xsl:value-of
select=
"$element_type"
/>
>
*
>
(array)->resize(size);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name"
/>
_append(
<xsl:value-of
select=
"$name"
/>
* array,
<xsl:value-of
select=
"$element_type"
/>
value) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name"
/>
_append(
<xsl:value-of
select=
"$name"
/>
* array,
<xsl:value-of
select=
"$element_type"
/>
value) {
reinterpret_cast
<
vector
<
<xsl:value-of
select=
"$element_type"
/>
>
*
>
(array)->push_back(value);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name"
/>
_set(
<xsl:value-of
select=
"$name"
/>
* array, int index,
<xsl:value-of
select=
"$element_type"
/>
value) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name"
/>
_set(
<xsl:value-of
select=
"$name"
/>
* array, int index,
<xsl:value-of
select=
"$element_type"
/>
value) {
(*reinterpret_cast
<
vector
<
<xsl:value-of
select=
"$element_type"
/>
>
*
>
(array))[index] = value;
}
OPENMM_EXPORT
<info
xml:space=
"preserve"
>
<xsl:value-of
select=
"$element_type"
/>
<xsl:value-of
select=
"$name"
/>
_get(const
<xsl:value-of
select=
"$name"
/>
* array, int index) {
OPENMM_EXPORT
_AMOEBA
<info
xml:space=
"preserve"
>
<xsl:value-of
select=
"$element_type"
/>
<xsl:value-of
select=
"$name"
/>
_get(const
<xsl:value-of
select=
"$name"
/>
* array, int index) {
return (*reinterpret_cast
<
const vector
<
<xsl:value-of
select=
"$element_type"
/>
>
*
>
(array))[index];
}
</info>
...
...
@@ -173,7 +173,7 @@ OPENMM_EXPORT <info xml:space="preserve"> <xsl:value-of select="$element_type"/>
</xsl:call-template>
</xsl:for-each>
</xsl:if>
OPENMM_EXPORT void OpenMM_
<xsl:value-of
select=
"concat(@name, '_destroy(OpenMM_', @name, '* target) {')"
/>
OPENMM_EXPORT
_AMOEBA
void OpenMM_
<xsl:value-of
select=
"concat(@name, '_destroy(OpenMM_', @name, '* target) {')"
/>
delete reinterpret_cast
<
<xsl:value-of
select=
"@name"
/>
*
>
(target);
}
<!-- Methods -->
...
...
@@ -198,7 +198,7 @@ OPENMM_EXPORT void OpenMM_<xsl:value-of select="concat(@name, '_destroy(OpenMM_'
<!-- Print out the definition of a constructor -->
<xsl:template
name=
"constructor"
>
<xsl:param
name=
"suffix"
/>
OPENMM_EXPORT OpenMM_
<xsl:value-of
select=
"concat(@name, '* OpenMM_', @name, '_create', $suffix, '(')"
/>
OPENMM_EXPORT
_AMOEBA
OpenMM_
<xsl:value-of
select=
"concat(@name, '* OpenMM_', @name, '_create', $suffix, '(')"
/>
<xsl:for-each
select=
"Argument"
>
<xsl:if
test=
"position() > 1"
>
,
</xsl:if>
<xsl:call-template
name=
"wrap_type"
><xsl:with-param
name=
"type_id"
select=
"@type"
/></xsl:call-template>
...
...
@@ -223,7 +223,7 @@ OPENMM_EXPORT OpenMM_<xsl:value-of select="concat(@name, '* OpenMM_', @name, '_c
<xsl:param
name=
"class_id"
/>
<!-- First the method signature -->
<xsl:value-of
select=
"$newline"
/>
OPENMM_EXPORT
<xsl:call-template
name=
"wrap_type"
><xsl:with-param
name=
"type_id"
select=
"@returns"
/></xsl:call-template><xsl:value-of
select=
"concat(' OpenMM_', $class_name, '_', @name, '(')"
/>
OPENMM_EXPORT
_AMOEBA
<xsl:call-template
name=
"wrap_type"
><xsl:with-param
name=
"type_id"
select=
"@returns"
/></xsl:call-template><xsl:value-of
select=
"concat(' OpenMM_', $class_name, '_', @name, '(')"
/>
<xsl:if
test=
"not(@static='1')"
>
<xsl:if
test=
"@const='1'"
>
<xsl:value-of
select=
"'const '"
/>
...
...
plugins/amoeba/wrappers/FortranWrapper_Source.xslt
View file @
b256555e
...
...
@@ -83,48 +83,48 @@ extern "C" {
<xsl:variable
name=
"name_lower"
select=
"lower-case($name)"
/>
<xsl:variable
name=
"name_upper"
select=
"upper-case($name)"
/>
/*
<xsl:value-of
select=
"$name"
/>
*/
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_lower"
/>
_create_(
<xsl:value-of
select=
"$name"
/>
*
&
result, const int
&
size) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_lower"
/>
_create_(
<xsl:value-of
select=
"$name"
/>
*
&
result, const int
&
size) {
result =
<xsl:value-of
select=
"$name"
/>
_create(size);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_upper"
/>
_CREATE(
<xsl:value-of
select=
"$name"
/>
*
&
result, const int
&
size) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_upper"
/>
_CREATE(
<xsl:value-of
select=
"$name"
/>
*
&
result, const int
&
size) {
result =
<xsl:value-of
select=
"$name"
/>
_create(size);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_lower"
/>
_destroy_(
<xsl:value-of
select=
"$name"
/>
*
&
array) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_lower"
/>
_destroy_(
<xsl:value-of
select=
"$name"
/>
*
&
array) {
<xsl:value-of
select=
"$name"
/>
_destroy(array);
array = 0;
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_upper"
/>
_DESTROY(
<xsl:value-of
select=
"$name"
/>
*
&
array) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_upper"
/>
_DESTROY(
<xsl:value-of
select=
"$name"
/>
*
&
array) {
<xsl:value-of
select=
"$name"
/>
_destroy(array);
array = 0;
}
OPENMM_EXPORT int
<xsl:value-of
select=
"$name_lower"
/>
_getsize_(const
<xsl:value-of
select=
"$name"
/>
* const
&
array) {
OPENMM_EXPORT
_AMOEBA
int
<xsl:value-of
select=
"$name_lower"
/>
_getsize_(const
<xsl:value-of
select=
"$name"
/>
* const
&
array) {
return
<xsl:value-of
select=
"$name"
/>
_getSize(array);
}
OPENMM_EXPORT int
<xsl:value-of
select=
"$name_upper"
/>
_GETSIZE(const
<xsl:value-of
select=
"$name"
/>
* const
&
array) {
OPENMM_EXPORT
_AMOEBA
int
<xsl:value-of
select=
"$name_upper"
/>
_GETSIZE(const
<xsl:value-of
select=
"$name"
/>
* const
&
array) {
return
<xsl:value-of
select=
"$name"
/>
_getSize(array);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_lower"
/>
_resize_(
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
size) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_lower"
/>
_resize_(
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
size) {
<xsl:value-of
select=
"$name"
/>
_resize(array, size);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_upper"
/>
_RESIZE(
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
size) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_upper"
/>
_RESIZE(
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
size) {
<xsl:value-of
select=
"$name"
/>
_resize(array, size);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_lower"
/>
_append_(
<xsl:value-of
select=
"$name"
/>
* const
&
array,
<xsl:value-of
select=
"$element_type"
/>
value) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_lower"
/>
_append_(
<xsl:value-of
select=
"$name"
/>
* const
&
array,
<xsl:value-of
select=
"$element_type"
/>
value) {
<xsl:value-of
select=
"$name"
/>
_append(array, value);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_upper"
/>
_APPEND(
<xsl:value-of
select=
"$name"
/>
* const
&
array,
<xsl:value-of
select=
"$element_type"
/>
value) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_upper"
/>
_APPEND(
<xsl:value-of
select=
"$name"
/>
* const
&
array,
<xsl:value-of
select=
"$element_type"
/>
value) {
<xsl:value-of
select=
"$name"
/>
_append(array, value);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_lower"
/>
_set_(
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
index,
<xsl:value-of
select=
"$element_type"
/>
value) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_lower"
/>
_set_(
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
index,
<xsl:value-of
select=
"$element_type"
/>
value) {
<xsl:value-of
select=
"$name"
/>
_set(array, index-1, value);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_upper"
/>
_SET(
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
index,
<xsl:value-of
select=
"$element_type"
/>
value) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_upper"
/>
_SET(
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
index,
<xsl:value-of
select=
"$element_type"
/>
value) {
<xsl:value-of
select=
"$name"
/>
_set(array, index-1, value);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_lower"
/>
_get_(const
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
index,
<xsl:value-of
select=
"$element_type"
/>
&
result) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_lower"
/>
_get_(const
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
index,
<xsl:value-of
select=
"$element_type"
/>
&
result) {
result =
<xsl:value-of
select=
"$name"
/>
_get(array, index-1);
}
OPENMM_EXPORT void
<xsl:value-of
select=
"$name_upper"
/>
_GET(const
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
index,
<xsl:value-of
select=
"$element_type"
/>
&
result) {
OPENMM_EXPORT
_AMOEBA
void
<xsl:value-of
select=
"$name_upper"
/>
_GET(const
<xsl:value-of
select=
"$name"
/>
* const
&
array, const int
&
index,
<xsl:value-of
select=
"$element_type"
/>
&
result) {
result =
<xsl:value-of
select=
"$name"
/>
_get(array, index-1);
}
</xsl:template>
...
...
@@ -188,7 +188,7 @@ OPENMM_EXPORT void <xsl:value-of select="$name_upper"/>_GET(const <xsl:value-of
<xsl:template
name=
"constructor"
>
<xsl:param
name=
"function_name"
/>
<xsl:param
name=
"suffix"
/>
OPENMM_EXPORT
<xsl:value-of
select=
"concat('void ', $function_name, '(OpenMM_', @name, '*& result')"
/>
OPENMM_EXPORT
_AMOEBA
<xsl:value-of
select=
"concat('void ', $function_name, '(OpenMM_', @name, '*& result')"
/>
<!-- Generate the list of arguments -->
<xsl:for-each
select=
"Argument"
>
<xsl:value-of
select=
"', '"
/>
...
...
@@ -231,7 +231,7 @@ OPENMM_EXPORT <xsl:value-of select="concat('void ', $function_name, '(OpenMM_',
<!-- Print out the definition of a destructor -->
<xsl:template
name=
"destructor"
>
<xsl:param
name=
"function_name"
/>
OPENMM_EXPORT
<xsl:value-of
select=
"concat('void ', $function_name, '(OpenMM_', @name, '*& destroy) {')"
/>
OPENMM_EXPORT
_AMOEBA
<xsl:value-of
select=
"concat('void ', $function_name, '(OpenMM_', @name, '*& destroy) {')"
/>
OpenMM_
<xsl:value-of
select=
"concat(@name, '_destroy(destroy);')"
/>
destroy = 0;
}
...
...
@@ -245,7 +245,7 @@ OPENMM_EXPORT <xsl:value-of select="concat('void ', $function_name, '(OpenMM_',
<!-- First the method signature -->
<xsl:variable
name=
"has_return"
select=
"@returns=$int_type_id or @returns=$double_type_id"
/>
<xsl:variable
name=
"has_return_arg"
select=
"not($has_return or @returns=$void_type_id)"
/>
OPENMM_EXPORT
<xsl:if
test=
"$has_return"
>
OPENMM_EXPORT
_AMOEBA
<xsl:if
test=
"$has_return"
>
<xsl:call-template
name=
"wrap_type"
><xsl:with-param
name=
"type_id"
select=
"@returns"
/></xsl:call-template>
</xsl:if>
<xsl:if
test=
"not($has_return)"
>
...
...
plugins/rpmd/CMakeLists.txt
View file @
b256555e
...
...
@@ -97,11 +97,11 @@ INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/platforms/reference/src/S
INCLUDE_DIRECTORIES
(
BEFORE
${
CMAKE_CURRENT_SOURCE_DIR
}
/src
)
ADD_LIBRARY
(
${
SHARED_RPMD_TARGET
}
SHARED
${
SOURCE_RPMD_FILES
}
${
SOURCE_RPMD_INCLUDE_FILES
}
${
API_RPMD_ABS_INCLUDE_FILES
}
)
SET_TARGET_PROPERTIES
(
${
SHARED_RPMD_TARGET
}
PROPERTIES COMPILE_FLAGS
"-DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY"
)
SET_TARGET_PROPERTIES
(
${
SHARED_RPMD_TARGET
}
PROPERTIES COMPILE_FLAGS
"-DOPENMM_
RPMD_
BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY"
)
#IF( CREATE_SERIALIZABLE_OPENMM_RPMD )
# ADD_LIBRARY(${SHARED_RPMD_SERIALIZABLE_TARGET} SHARED ${SOURCE_RPMD_FILES} ${SOURCE_RPMD_INCLUDE_FILES} ${API_RPMD_ABS_INCLUDE_FILES})
# SET_TARGET_PROPERTIES(${SHARED_RPMD_SERIALIZABLE_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DOPENMM_SERIALIZE")
# SET_TARGET_PROPERTIES(${SHARED_RPMD_SERIALIZABLE_TARGET} PROPERTIES COMPILE_FLAGS "-DOPENMM_
RPMD_
BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DOPENMM_SERIALIZE")
# INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/../../serialization/include)
#ENDIF( CREATE_SERIALIZABLE_OPENMM_RPMD )
...
...
plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h
View file @
b256555e
...
...
@@ -36,7 +36,7 @@
#include "openmm/Kernel.h"
#include "openmm/State.h"
#include "openmm/Vec3.h"
#include "openmm/internal/windowsExport.h"
#include "openmm/internal/windowsExport
Rpmd
.h"
namespace
OpenMM
{
...
...
@@ -54,7 +54,7 @@ namespace OpenMM {
* state information.
*/
class
OPENMM_EXPORT
RPMDIntegrator
:
public
Integrator
{
class
OPENMM_EXPORT
_RPMD
RPMDIntegrator
:
public
Integrator
{
public:
/**
* Create a RPMDIntegrator.
...
...
plugins/rpmd/openmmapi/include/openmm/internal/windowsExportRpmd.h
0 → 100644
View file @
b256555e
#ifndef OPENMM_WINDOWSEXPORTRPMD_H_
#define OPENMM_WINDOWSEXPORTRPMD_H_
/*
* Shared libraries are messy in Visual Studio. We have to distinguish three
* cases:
* (1) this header is being used to build the OpenMM shared library
* (dllexport)
* (2) this header is being used by a *client* of the OpenMM shared
* library (dllimport)
* (3) we are building the OpenMM static library, or the client is
* being compiled with the expectation of linking with the
* OpenMM static library (nothing special needed)
* In the CMake script for building this library, we define one of the symbols
* OPENMM_RPMD_BUILDING_{SHARED|STATIC}_LIBRARY
* Client code normally has no special symbol defined, in which case we'll
* assume it wants to use the shared library. However, if the client defines
* the symbol OPENMM_USE_STATIC_LIBRARIES we'll suppress the dllimport so
* that the client code can be linked with static libraries. Note that
* the client symbol is not library dependent, while the library symbols
* affect only the OpenMM library, meaning that other libraries can
* be clients of this one. However, we are assuming all-static or all-shared.
*/
#ifdef _MSC_VER
// We don't want to hear about how sprintf is "unsafe".
#pragma warning(disable:4996)
// Keep MS VC++ quiet about lack of dll export of private members.
#pragma warning(disable:4251)
#if defined(OPENMM_RPMD_BUILDING_SHARED_LIBRARY)
#define OPENMM_EXPORT_RPMD __declspec(dllexport)
#elif defined(OPENMM_RPMD_BUILDING_STATIC_LIBRARY) || defined(OPENMM_RPMD_USE_STATIC_LIBRARIES)
#define OPENMM_EXPORT_RPMD
#else
#define OPENMM_EXPORT_RPMD __declspec(dllimport) // i.e., a client of a shared library
#endif
#else
#define OPENMM_EXPORT_RPMD // Linux, Mac
#endif
#endif // OPENMM_WINDOWSEXPORTRPMD_H_
plugins/rpmd/platforms/reference/src/ReferenceRpmdKernelFactory.cpp
View file @
b256555e
...
...
@@ -27,7 +27,6 @@
#include "ReferenceRpmdKernelFactory.h"
#include "ReferenceRpmdKernels.h"
#include "ReferencePlatform.h"
#include "openmm/internal/windowsExport.h"
#include "openmm/internal/ContextImpl.h"
#include "openmm/OpenMMException.h"
...
...
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