Added index bounds checking to lots of methods

a566a074 · Peter Eastman · 12daada5 · a566a074 · a566a074 · a566a074
Commit a566a074 authored Jan 31, 2012 by Peter Eastman
20 changed files
--- a/platforms/reference/tests/TestReferenceNeighborList.cpp
+++ b/platforms/reference/tests/TestReferenceNeighborList.cpp
--- a/platforms/reference/tests/TestReferenceNonbondedForce.cpp
+++ b/platforms/reference/tests/TestReferenceNonbondedForce.cpp
--- a/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp
+++ b/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp
--- a/platforms/reference/tests/TestReferenceRBTorsionForce.cpp
+++ b/platforms/reference/tests/TestReferenceRBTorsionForce.cpp
--- a/platforms/reference/tests/TestReferenceRandom.cpp
+++ b/platforms/reference/tests/TestReferenceRandom.cpp
--- a/platforms/reference/tests/TestReferenceVariableLangevinIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceVariableLangevinIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceVariableVerletIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceVariableVerletIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceVerletIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceVerletIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceVirtualSites.cpp
+++ b/platforms/reference/tests/TestReferenceVirtualSites.cpp
--- a/plugins/amoeba/platforms/cuda/tests/AmoebaTinkerParameterFile.h
+++ b/plugins/amoeba/platforms/cuda/tests/AmoebaTinkerParameterFile.h
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaHarmonicAngleForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaHarmonicAngleForce.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaHarmonicBondForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaHarmonicBondForce.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaHarmonicInPlaneAngleForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaHarmonicInPlaneAngleForce.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaOutOfPlaneBendForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaOutOfPlaneBendForce.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaPME.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaPME.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaPiTorsionForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaPiTorsionForce.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaStretchBendForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaStretchBendForce.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaTorsionForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaTorsionForce.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaTorsionTorsionForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaTorsionTorsionForce.cpp
--- a/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaUreyBradleyForce.cpp
+++ b/plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaUreyBradleyForce.cpp