Added index bounds checking to lots of methods

platforms/opencl/tests/TestOpenCLFFT.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of sorting.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "../src/OpenCLArray.h"
 #include "../src/OpenCLContext.h"
 #include "../src/OpenCLFFT3D.h"

platforms/opencl/tests/TestOpenCLGBSAOBCForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of GBSAOBCForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "ReferencePlatform.h"

platforms/opencl/tests/TestOpenCLGBSAOBCForce2.cpp

@@ -55,7 +55,7 @@
  * Utility methods shared across unit tests
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "openmm/System.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"

platforms/opencl/tests/TestOpenCLHarmonicAngleForce.cpp

@@ -34,7 +34,7 @@
  * This tests the OpenCL implementation of HarmonicAngleForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/HarmonicAngleForce.h"

platforms/opencl/tests/TestOpenCLHarmonicBondForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of HarmonicBondForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/opencl/tests/TestOpenCLLangevinIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the reference implementation of LangevinIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/opencl/tests/TestOpenCLLocalEnergyMinimizer.cpp

@@ -30,7 +30,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "OpenCLPlatform.h"
 #include "openmm/Context.h"
 #include "openmm/HarmonicBondForce.h"

platforms/opencl/tests/TestOpenCLMonteCarloBarostat.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of MonteCarloBarostat.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/MonteCarloBarostat.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"

platforms/opencl/tests/TestOpenCLMultipleForces.cpp

@@ -34,7 +34,7 @@
  * processing them correctly.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "ReferencePlatform.h"

platforms/opencl/tests/TestOpenCLNonbondedForce.cpp

@@ -33,7 +33,7 @@
  * This tests all the different force terms in the reference implementation of NonbondedForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "ReferencePlatform.h"

platforms/opencl/tests/TestOpenCLPeriodicTorsionForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of PeriodicTorsionForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/PeriodicTorsionForce.h"

platforms/opencl/tests/TestOpenCLRBTorsionForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of RBTorsionForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/RBTorsionForce.h"

platforms/opencl/tests/TestOpenCLRandom.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of random number generation.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "../src/OpenCLArray.h"
 #include "../src/OpenCLContext.h"
 #include "../src/OpenCLIntegrationUtilities.h"

platforms/opencl/tests/TestOpenCLSettle.cpp

@@ -34,7 +34,7 @@
  * This tests the OpenCL implementation of the SETTLE algorithm.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/NonbondedForce.h"

platforms/opencl/tests/TestOpenCLSort.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of sorting.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "../src/OpenCLArray.h"
 #include "../src/OpenCLContext.h"
 #include "../src/OpenCLSort.h"

platforms/opencl/tests/TestOpenCLVariableLangevinIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of VariableLangevinIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/opencl/tests/TestOpenCLVariableVerletIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of VariableVerletIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/opencl/tests/TestOpenCLVerletIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of VerletIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/opencl/tests/TestOpenCLVirtualSites.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of virtual sites.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/CustomBondForce.h"

platforms/reference/tests/TestReferenceAndersenThermostat.cpp

@@ -33,7 +33,7 @@
  * This tests the reference implementation of AndersenThermostat.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/AndersenThermostat.h"
 #include "openmm/Context.h"
 #include "ReferencePlatform.h"