Added index bounds checking to lots of methods

serialization/tests/TestSerializeCustomAngleForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CustomAngleForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeCustomBondForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CustomBondForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeCustomExternalForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CustomExternalForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeCustomGBForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CustomGBForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeCustomHbondForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CustomHbondForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeCustomNonbondedForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CustomNonbondedForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeCustomTorsionForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CustomTorsionForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeGBSAOBCForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/GBSAOBCForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeGBVIForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/GBVIForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeHarmonicAngleForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/HarmonicAngleForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeHarmonicBondForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/HarmonicBondForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeMonteCarloBarostat.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/MonteCarloBarostat.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeNonbondedForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/NonbondedForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializePeriodicTorsionForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/PeriodicTorsionForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeRBTorsionForce.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/RBTorsionForce.h"
 #include "openmm/serialization/XmlSerializer.h"
 #include <iostream>

serialization/tests/TestSerializeSystem.cpp

@@ -29,7 +29,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/HarmonicBondForce.h"
 #include "openmm/System.h"
 #include "openmm/serialization/XmlSerializer.h"

tests/TestFindExclusions.cpp

@@ -29,8 +29,9 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/NonbondedForce.h"
+#include "openmm/OpenMMException.h"
 #include <iostream>
 #include <set>
 #include <vector>

tests/TestSplineFitter.cpp

@@ -32,7 +32,7 @@
 #ifdef WIN32
   #define _USE_MATH_DEFINES // Needed to get M_PI
 #endif
-#include "AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/internal/SplineFitter.h"
 #include <cmath>
 #include <iostream>