Merge branch 'master' into gayberne

a381a3ab · peastman · 5ecc8e00 · 1f7866ad · a381a3ab · a381a3ab
Commit a381a3ab authored Aug 01, 2016 by peastman
20 changed files
--- a/platforms/reference/include/ReferenceCustomTorsionIxn.h
+++ b/platforms/reference/include/ReferenceCustomTorsionIxn.h
--- a/platforms/reference/include/ReferenceHarmonicBondIxn.h
+++ b/platforms/reference/include/ReferenceHarmonicBondIxn.h
--- a/platforms/reference/include/ReferenceKernels.h
+++ b/platforms/reference/include/ReferenceKernels.h
--- a/platforms/reference/include/ReferenceLJCoulomb14.h
+++ b/platforms/reference/include/ReferenceLJCoulomb14.h
--- a/platforms/reference/include/ReferencePlatform.h
+++ b/platforms/reference/include/ReferencePlatform.h
--- a/platforms/reference/include/ReferenceProperDihedralBond.h
+++ b/platforms/reference/include/ReferenceProperDihedralBond.h
--- a/platforms/reference/include/ReferenceRbDihedralBond.h
+++ b/platforms/reference/include/ReferenceRbDihedralBond.h
--- a/platforms/reference/src/ReferenceKernels.cpp
+++ b/platforms/reference/src/ReferenceKernels.cpp
--- a/platforms/reference/src/ReferencePlatform.cpp
+++ b/platforms/reference/src/ReferencePlatform.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp