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Commit 911e27da authored by peastman's avatar peastman
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Merge pull request #245 from peastman/wrappers 

Reimplemented C/Fortran wrapper generation
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wrappers/python/src/swig_doxygen/doxygen/Doxyfile.in
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......@@ -618,6 +618,9 @@ EXCLUDE_PATTERNS = */tests/* \
*/openmmapi/src/* \
*/internal/* \
*/.svn/* \
*amoebaKernels.h \
*DrudeKernels.h \
*RpmdKernels.h \
*OpenMMFortranModule.f90 \
*OpenMMCWrapper.h
......
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<!DOCTYPE html
PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<title>Saxonica: XSLT and XQuery Processing: Welcome</title>
<meta name="coverage" content="Worldwide">
<meta name="copyright" content="Copyright Saxonica Ltd">
<meta name="title" content="Saxonica: XSLT and XQuery Processing: About Saxon">
<meta name="robots" content="noindex,nofollow">
<link rel="stylesheet" href="saxondocs.css" type="text/css">
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<div id="LogoArea" style="position:absolute; width:340px; height:72px; z-index:3; right: 0px; top: 0px; border: 1px none #000000; visibility: visible;"><a href="http://www.saxonica.com/"><img src="img/saxonica_logo.gif" width="340" height="72" border="0" alt="Saxonica.com"></a></div>
<div id="MainTextArea" style="position:absolute; height:100%; z-index:5; left: 130px; right: 260px; top: 110px; border: 1px none #000000; visibility: visible;">
<h1>Welcome to Saxon</h1>
<p class="subhead">Online Documentation</p>
<p>Saxon documentation for the current release is available online:</p>
<ul>
<li><p><a href="http://www.saxonica.com/documentation/documentation.html" class="bodylink">Saxon Documentation</a></p></li>
<li><p><a href="http://www.saxonica.com/documentation/javadoc/index.html" class="bodylink">Javadoc API Documentation</a></p></li>
<li><p><a href="http://www.saxonica.com/documentation/dotnetdoc/index.html" class="bodylink">.NET API Documentation</a></p></li>
</ul>
<p class="subhead">Downloads</p>
<p>Saxon documentation, together with source code and sample applications
can also be downloaded, both for the current release and for earlier releases.
</p>
<p>The same file <code>saxon-resources8-N.zip</code> covers both Saxon products
(Saxon-B and Saxon-SA), and both platforms (Java and .NET).</p>
<p>The file also contains sample applications and Saxon-B source code.</p>
<ul>
<li><p><a class="bodylink" href="http://sourceforge.net/project/showfiles.php?group_id=29872">Saxon-B downloads at SourceForge</a></li>
<li><p><a class="bodylink" href="http://www.saxonica.com/">Saxon-SA downloads at www.saxonica.com</a></li>
</ul>
</div>
</body>
</html>
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wrappers/saxonb9-1-0-7j/notices/APACHE.txt deleted 100644 → 0
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Apache Ant
Copyright 1999-2006 The Apache Software Foundation
This product includes software developed by
The Apache Software Foundation (http://www.apache.org/).
This product includes also software developed by :
- the W3C consortium (http://www.w3c.org) ,
- the SAX project (http://www.saxproject.org)
The <sync> task is based on code Copyright (c) 2002, Landmark
Graphics Corp that has been kindly donated to the Apache Software
Foundation.
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Copyright © 1999 CERN - European Organization for Nuclear Research.<br/><br/>
Permission to use, copy, modify, distribute and sell this software and its documentation for any purpose
is hereby granted without fee, provided that the above copyright notice appear in all copies and
that both that copyright notice and this permission notice appear in supporting documentation.
CERN makes no representations about the suitability of this software for any purpose.
It is provided "as is" without expressed or implied warranty.
\ No newline at end of file
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Copyright (C) 2002-2007 Jeroen Frijters
This software is provided 'as-is', without any express or implied
warranty. In no event will the authors be held liable for any damages
arising from the use of this software.
Permission is granted to anyone to use this software for any purpose,
including commercial applications, and to alter it and redistribute it
freely, subject to the following restrictions:
1. The origin of this software must not be misrepresented; you must not
claim that you wrote the original software. If you use this software
in a product, an acknowledgment in the product documentation would be
appreciated but is not required.
2. Altered source versions must be plainly marked as such, and must not be
misrepresented as being the original software.
3. This notice may not be removed or altered from any source distribution.
Jeroen Frijters
jeroen@frijters.net
wrappers/saxonb9-1-0-7j/notices/GPL+CLASSPATH.txt deleted 100644 → 0
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The GNU General Public License (GPL)
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies of this license
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Preamble
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and to copy and distribute the resulting executable under terms of your
choice, provided that you also meet, for each linked independent module,
the terms and conditions of the license of that module. An independent
module is a module which is not derived from or based on this library. If
you modify this library, you may extend this exception to your version of
the library, but you are not obligated to do so. If you do not wish to do
so, delete this exception statement from your version.
wrappers/saxonb9-1-0-7j/notices/JAMESCLARK.txt deleted 100644 → 0
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Copyright (c) 1998, 1999 James Clark
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
The above copyright notice and this permission notice shall be included
in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED ``AS IS'', WITHOUT WARRANTY OF ANY KIND, EXPRESS
OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL JAMES CLARK BE LIABLE FOR ANY CLAIM, DAMAGES OR
OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
Except as contained in this notice, the name of James Clark shall
not be used in advertising or otherwise to promote the sale, use or
other dealings in this Software without prior written authorization
from James Clark.
wrappers/saxonb9-1-0-7j/notices/LEGAL.txt deleted 100644 → 0
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LEGAL NOTICE
This notice is issued to fulfil the requirements of the Mozilla Public License version 1.0 ("MPL 1.0")
sections 3.4(a) and 3.6. MPL 1.0 can be found at http://www.mozilla.org/MPL/MPL-1.0.html.
Section 3.4(a) of MPL 1.0 states that any third party intellectual property rights in particular
functionality or code must be notified in a text file named LEGAL that is issued with the source code. Saxon
includes a number of such third party components, and the relevant claims are included in notices included
in the same directory as this notice. Although MPL 1.0 requires this notice to be included only with source
code, some of the third parties may also require notices to be included with executable code. Therefore, Saxon
executable code must not be distributed separately from this notice and all the accompanying third
party notices. The term "Distribution" here includes making the code available for download, and its
inclusion in download repositories such as Maven.
Section 3.6 of MPL 1.0 states:
You may distribute Covered Code in Executable form only if the requirements of Section 3.1-3.5 have
been met for that Covered Code, and if You include a notice stating that the Source Code version of
the Covered Code is available under the terms of this License, including a description of how and
where You have fulfilled the obligations of Section 3.2.
Section 3.2 requires the Source Code of Covered Code to be made available via an accepted Electronic
Distribution Mechanism.
The Source Code version of the Covered Code (that is, the source code of Saxon-B) is available under the
terms of the Mozilla Public License version 1.0, and may be obtained from the Subversion repository
for the Saxon project on SourceForge, at https://sourceforge.net/svn/?group_id=29872.
The precise version of the Subversion source for a particular Saxon maintenance release can be
determined by referring to the release notes for the particular release in the SourceForge download area.
Note that MPL 1.0 requires that any modifications to this source code must be made available under the terms
of the MPL "to anyone to whom you made an executable version available". As a courtesy, it is also requested
that you make such modifications available to Saxonica Limited.
\ No newline at end of file
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The contents of these file are subject to the Mozilla Public License Version 1.0 (the "License");
you may not use these files except in compliance with the License. You may obtain a copy of the
License at http://www.mozilla.org/MPL/
Software distributed under the License is distributed on an "AS IS" basis,
WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License for the
specific language governing rights and limitations under the License.
The Original Code is all Saxon modules labelled with a notice referring to this license.
The Initial Developer of the Original Code is Michael Kay, except where otherwise specified in an individual module.
Portions created by other named contributors are copyright as identified in the relevant module. All Rights Reserved.
Contributor(s) are listed in the documentation: see notices/contributors.
\ No newline at end of file
wrappers/saxonb9-1-0-7j/notices/THAI.txt deleted 100644 → 0
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Copyright (c) 2001-2003 Thai Open Source Software Center Ltd
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in
the documentation and/or other materials provided with the
distribution.
Neither the name of the Thai Open Source Software Center Ltd nor
the names of its contributors may be used to endorse or promote
products derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
wrappers/saxonb9-1-0-7j/notices/UNICODE.txt deleted 100644 → 0
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COPYRIGHT AND PERMISSION NOTICE
Copyright © 1991-2007 Unicode, Inc. All rights reserved. Distributed under the Terms of Use
in http://www.unicode.org/copyright.html.
Permission is hereby granted, free of charge, to any person obtaining a copy of the Unicode
data files and any associated documentation (the "Data Files") or Unicode software and any
associated documentation (the "Software") to deal in the Data Files or Software without
restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute,
and/or sell copies of the Data Files or Software, and to permit persons to whom the Data Files or
Software are furnished to do so, provided that (a) the above copyright notice(s) and this
permission notice appear with all copies of the Data Files or Software, (b) both the above
copyright notice(s) and this permission notice appear in associated documentation, and
(c) there is clear notice in each modified Data File or in the Software as well as in the
documentation associated with the Data File(s) or Software that the data or software has
been modified.
THE DATA FILES AND SOFTWARE ARE PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF THIRD PARTY RIGHTS.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR HOLDERS INCLUDED IN THIS NOTICE
BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL INDIRECT OR CONSEQUENTIAL DAMAGES,
OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION,
ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THE DATA
FILES OR SOFTWARE.
Except as contained in this notice, the name of a copyright holder shall not be used
in advertising or otherwise to promote the sale, use or other dealings in these
Data Files or Software without prior written authorization of the copyright holder.
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