Merge branch 'master' of github.com:leeping/openmm

8df54762 · Lee-Ping Wang · 3cb25ad8 · 59854c5e · 8df54762 · 8df54762
Commit 8df54762 authored Nov 19, 2013 by Lee-Ping Wang
20 changed files
--- a/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomTorsionIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomTorsionIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceForce.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceForce.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp
--- a/platforms/reference/src/SimTKReference/PME.cpp
+++ b/platforms/reference/src/SimTKReference/PME.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceShakeAlgorithm.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceShakeAlgorithm.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceVariableStochasticDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceVariableStochasticDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceVariableVerletDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceVariableVerletDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceVerletDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceVerletDynamics.cpp
--- a/platforms/reference/src/gbsa/CpuObc.cpp
+++ b/platforms/reference/src/gbsa/CpuObc.cpp
--- a/platforms/reference/src/gbsa/ObcParameters.cpp
+++ b/platforms/reference/src/gbsa/ObcParameters.cpp
--- a/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceCustomGBForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomGBForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceCustomIntegrator.cpp
--- a/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp