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tsoc
openmm
Commits
882de410
Commit
882de410
authored
Jun 30, 2016
by
Saurabh Belsare
Browse files
Added tests for getLabFramePermanentDipoles and getTotalDipoles
parent
dca54ec7
Changes
2
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plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaMultipoleForce.cpp
...eba/platforms/cuda/tests/TestCudaAmoebaMultipoleForce.cpp
+70
-0
plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaMultipoleForce.cpp
...rms/reference/tests/TestReferenceAmoebaMultipoleForce.cpp
+70
-0
No files found.
plugins/amoeba/platforms/cuda/tests/TestCudaAmoebaMultipoleForce.cpp
View file @
882de410
...
...
@@ -2666,6 +2666,76 @@ static void testParticleInducedDipoles() {
ASSERT_EQUAL_VEC
(
expectedDipole
[
i
],
dipole
[
i
],
1e-4
);
}
// test querying particle lab frame permanent dipoles
static
void
testParticleLabFramePermanentDipoles
()
{
int
numberOfParticles
=
8
;
int
inputPmeGridDimension
=
0
;
double
cutoff
=
9000000.0
;
std
::
vector
<
Vec3
>
forces
;
double
energy
;
System
system
;
AmoebaMultipoleForce
*
amoebaMultipoleForce
=
new
AmoebaMultipoleForce
();;
setupMultipoleAmmonia
(
system
,
amoebaMultipoleForce
,
AmoebaMultipoleForce
::
NoCutoff
,
AmoebaMultipoleForce
::
Mutual
,
cutoff
,
inputPmeGridDimension
);
LangevinIntegrator
integrator
(
0.0
,
0.1
,
0.01
);
Context
context
(
system
,
integrator
,
Platform
::
getPlatformByName
(
"CUDA"
));
getForcesEnergyMultipoleAmmonia
(
context
,
forces
,
energy
);
std
::
vector
<
Vec3
>
dipole
;
amoebaMultipoleForce
->
getLabFramePermanentDipoles
(
context
,
dipole
);
// Compare to values calculated by TINKER.
std
::
vector
<
Vec3
>
expectedDipole
(
numberOfParticles
);
expectedDipole
[
0
]
=
Vec3
(
0.00876454250
,
-
2.04310718E-06
,
-
0.00227593519
);
expectedDipole
[
1
]
=
Vec3
(
0.000780382180
,
-
0.00432882849
,
0.00236926761
);
expectedDipole
[
2
]
=
Vec3
(
0.000801345883
,
0.00431830946
,
0.00238143437
);
expectedDipole
[
3
]
=
Vec3
(
-
0.00109746996
,
1.16087953e-5
,
-
0.00487407492
);
expectedDipole
[
4
]
=
Vec3
(
0.00203814102
,
-
2.26554196e-5
,
0.00882284298
);
expectedDipole
[
5
]
=
Vec3
(
-
0.00239443187
,
0.00432388648
,
0.000729303209
);
expectedDipole
[
6
]
=
Vec3
(
0.00491086743
,
2.86430963e-6
,
-
0.000918996348
);
expectedDipole
[
7
]
=
Vec3
(
-
0.00239301946
,
-
0.00432743976
,
0.000712674115
);
for
(
int
i
=
0
;
i
<
numberOfParticles
;
i
++
)
ASSERT_EQUAL_VEC
(
expectedDipole
[
i
],
dipole
[
i
],
1e-4
);
}
// test querying particle total dipoles (fixed + induced)
static
void
testParticleTotalDipoles
()
{
int
numberOfParticles
=
8
;
int
inputPmeGridDimension
=
0
;
double
cutoff
=
9000000.0
;
std
::
vector
<
Vec3
>
forces
;
double
energy
;
System
system
;
AmoebaMultipoleForce
*
amoebaMultipoleForce
=
new
AmoebaMultipoleForce
();;
setupMultipoleAmmonia
(
system
,
amoebaMultipoleForce
,
AmoebaMultipoleForce
::
NoCutoff
,
AmoebaMultipoleForce
::
Mutual
,
cutoff
,
inputPmeGridDimension
);
LangevinIntegrator
integrator
(
0.0
,
0.1
,
0.01
);
Context
context
(
system
,
integrator
,
Platform
::
getPlatformByName
(
"CUDA"
));
getForcesEnergyMultipoleAmmonia
(
context
,
forces
,
energy
);
std
::
vector
<
Vec3
>
dipole
;
amoebaMultipoleForce
->
getTotalDipoles
(
context
,
dipole
);
// Compare to values calculated by TINKER.
std
::
vector
<
Vec3
>
expectedDipole
(
numberOfParticles
);
expectedDipole
[
0
]
=
Vec3
(
-
0.0803788842
,
-
2.09909888e-6
,
-
0.00392375693
);
expectedDipole
[
1
]
=
Vec3
(
0.0410569403
,
-
0.0203074199
,
0.00962003321
);
expectedDipole
[
2
]
=
Vec3
(
0.0411504999
,
0.0202374437
,
0.00966782877
);
expectedDipole
[
3
]
=
Vec3
(
0.0321482430
,
5.32063061e-5
,
-
0.0246587492
);
expectedDipole
[
4
]
=
Vec3
(
1.01040926
,
-
3.19669827e-5
,
0.0133900749
);
expectedDipole
[
5
]
=
Vec3
(
-
0.0410404238
,
0.0192119351
,
0.00832856054
);
expectedDipole
[
6
]
=
Vec3
(
-
0.00347968243
,
4.61438806e-6
,
0.00138347597
);
expectedDipole
[
7
]
=
Vec3
(
-
0.0410361153
,
-
0.0192440597
,
0.00825472631
);
for
(
int
i
=
0
;
i
<
numberOfParticles
;
i
++
)
ASSERT_EQUAL_VEC
(
expectedDipole
[
i
],
dipole
[
i
],
1e-4
);
}
// test computation of system multipole moments
static
void
testSystemMultipoleMoments
()
{
...
...
plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaMultipoleForce.cpp
View file @
882de410
...
...
@@ -2587,6 +2587,76 @@ static void testParticleInducedDipoles() {
ASSERT_EQUAL_VEC
(
expectedDipole
[
i
],
dipole
[
i
],
1e-4
);
}
// test querying particle lab frame permanent dipoles
static
void
testParticleLabFramePermanentDipoles
()
{
int
numberOfParticles
=
8
;
int
inputPmeGridDimension
=
0
;
double
cutoff
=
9000000.0
;
std
::
vector
<
Vec3
>
forces
;
double
energy
;
System
system
;
AmoebaMultipoleForce
*
amoebaMultipoleForce
=
new
AmoebaMultipoleForce
();;
setupMultipoleAmmonia
(
system
,
amoebaMultipoleForce
,
AmoebaMultipoleForce
::
NoCutoff
,
AmoebaMultipoleForce
::
Mutual
,
cutoff
,
inputPmeGridDimension
);
LangevinIntegrator
integrator
(
0.0
,
0.1
,
0.01
);
Context
context
(
system
,
integrator
,
Platform
::
getPlatformByName
(
"Reference"
));
getForcesEnergyMultipoleAmmonia
(
context
,
forces
,
energy
);
std
::
vector
<
Vec3
>
dipole
;
amoebaMultipoleForce
->
getLabFramePermanentDipoles
(
context
,
dipole
);
// Compare to values calculated by TINKER.
std
::
vector
<
Vec3
>
expectedDipole
(
numberOfParticles
);
expectedDipole
[
0
]
=
Vec3
(
0.00876454250
,
-
2.04310718E-06
,
-
0.00227593519
);
expectedDipole
[
1
]
=
Vec3
(
0.000780382180
,
-
0.00432882849
,
0.00236926761
);
expectedDipole
[
2
]
=
Vec3
(
0.000801345883
,
0.00431830946
,
0.00238143437
);
expectedDipole
[
3
]
=
Vec3
(
-
0.00109746996
,
1.16087953e-5
,
-
0.00487407492
);
expectedDipole
[
4
]
=
Vec3
(
0.00203814102
,
-
2.26554196e-5
,
0.00882284298
);
expectedDipole
[
5
]
=
Vec3
(
-
0.00239443187
,
0.00432388648
,
0.000729303209
);
expectedDipole
[
6
]
=
Vec3
(
0.00491086743
,
2.86430963e-6
,
-
0.000918996348
);
expectedDipole
[
7
]
=
Vec3
(
-
0.00239301946
,
-
0.00432743976
,
0.000712674115
);
for
(
int
i
=
0
;
i
<
numberOfParticles
;
i
++
)
ASSERT_EQUAL_VEC
(
expectedDipole
[
i
],
dipole
[
i
],
1e-4
);
}
// test querying particle total dipoles (fixed + induced)
static
void
testParticleTotalDipoles
()
{
int
numberOfParticles
=
8
;
int
inputPmeGridDimension
=
0
;
double
cutoff
=
9000000.0
;
std
::
vector
<
Vec3
>
forces
;
double
energy
;
System
system
;
AmoebaMultipoleForce
*
amoebaMultipoleForce
=
new
AmoebaMultipoleForce
();;
setupMultipoleAmmonia
(
system
,
amoebaMultipoleForce
,
AmoebaMultipoleForce
::
NoCutoff
,
AmoebaMultipoleForce
::
Mutual
,
cutoff
,
inputPmeGridDimension
);
LangevinIntegrator
integrator
(
0.0
,
0.1
,
0.01
);
Context
context
(
system
,
integrator
,
Platform
::
getPlatformByName
(
"Reference"
));
getForcesEnergyMultipoleAmmonia
(
context
,
forces
,
energy
);
std
::
vector
<
Vec3
>
dipole
;
amoebaMultipoleForce
->
getTotalDipoles
(
context
,
dipole
);
// Compare to values calculated by TINKER.
std
::
vector
<
Vec3
>
expectedDipole
(
numberOfParticles
);
expectedDipole
[
0
]
=
Vec3
(
-
0.0803788842
,
-
2.09909888e-6
,
-
0.00392375693
);
expectedDipole
[
1
]
=
Vec3
(
0.0410569403
,
-
0.0203074199
,
0.00962003321
);
expectedDipole
[
2
]
=
Vec3
(
0.0411504999
,
0.0202374437
,
0.00966782877
);
expectedDipole
[
3
]
=
Vec3
(
0.0321482430
,
5.32063061e-5
,
-
0.0246587492
);
expectedDipole
[
4
]
=
Vec3
(
1.01040926
,
-
3.19669827e-5
,
0.0133900749
);
expectedDipole
[
5
]
=
Vec3
(
-
0.0410404238
,
0.0192119351
,
0.00832856054
);
expectedDipole
[
6
]
=
Vec3
(
-
0.00347968243
,
4.61438806e-6
,
0.00138347597
);
expectedDipole
[
7
]
=
Vec3
(
-
0.0410361153
,
-
0.0192440597
,
0.00825472631
);
for
(
int
i
=
0
;
i
<
numberOfParticles
;
i
++
)
ASSERT_EQUAL_VEC
(
expectedDipole
[
i
],
dipole
[
i
],
1e-4
);
}
// test computation of system multipole moments
static
void
testSystemMultipoleMoments
()
{
...
...
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