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tsoc
openmm
Commits
66b697f4
"vscode:/vscode.git/clone" did not exist on "52c7a1fc3df4ee06bddc0f900d5e3cfaf8aa0c5c"
Commit
66b697f4
authored
Mar 31, 2020
by
peastman
Browse files
Increased default mass for Drude particles
parent
2ca67c5c
Changes
2
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2 changed files
with
4 additions
and
4 deletions
+4
-4
wrappers/python/simtk/openmm/app/charmmpsffile.py
wrappers/python/simtk/openmm/app/charmmpsffile.py
+2
-2
wrappers/python/simtk/openmm/app/forcefield.py
wrappers/python/simtk/openmm/app/forcefield.py
+2
-2
No files found.
wrappers/python/simtk/openmm/app/charmmpsffile.py
View file @
66b697f4
...
...
@@ -805,7 +805,7 @@ class CharmmPsfFile(object):
flexibleConstraints
=
True
,
verbose
=
False
,
gbsaModel
=
None
,
drudeMass
=
0.
1
*
u
.
amu
):
drudeMass
=
0.
4
*
u
.
amu
):
"""Construct an OpenMM System representing the topology described by the
prmtop file. You MUST have loaded a parameter set into this PSF before
calling createSystem. If not, AttributeError will be raised. ValueError
...
...
@@ -863,7 +863,7 @@ class CharmmPsfFile(object):
gbsaModel : str=None
Can be ACE (to use the ACE solvation model) or None. Other values
raise a ValueError
drudeMass : mass=0.
1
*amu
drudeMass : mass=0.
4
*amu
The mass to use for Drude particles. Any mass added to a Drude particle is
subtracted from its parent atom to keep their total mass the same.
"""
...
...
wrappers/python/simtk/openmm/app/forcefield.py
View file @
66b697f4
...
...
@@ -1082,7 +1082,7 @@ class ForceField(object):
def
createSystem
(
self
,
topology
,
nonbondedMethod
=
NoCutoff
,
nonbondedCutoff
=
1.0
*
unit
.
nanometer
,
constraints
=
None
,
rigidWater
=
None
,
removeCMMotion
=
True
,
hydrogenMass
=
None
,
residueTemplates
=
dict
(),
ignoreExternalBonds
=
False
,
switchDistance
=
None
,
flexibleConstraints
=
False
,
drudeMass
=
0.
1
*
unit
.
amu
,
**
args
):
ignoreExternalBonds
=
False
,
switchDistance
=
None
,
flexibleConstraints
=
False
,
drudeMass
=
0.
4
*
unit
.
amu
,
**
args
):
"""Construct an OpenMM System representing a Topology with this force field.
Parameters
...
...
@@ -1124,7 +1124,7 @@ class ForceField(object):
Lennard-Jones interactions. If this is None, no switching function will be used.
flexibleConstraints : boolean=False
If True, parameters for constrained degrees of freedom will be added to the System
drudeMass : mass=0.
1
*amu
drudeMass : mass=0.
4
*amu
The mass to use for Drude particles. Any mass added to a Drude particle is
subtracted from its parent atom to keep their total mass the same.
args
...
...
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