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tsoc
openmm
Commits
644cc275
Commit
644cc275
authored
Apr 21, 2009
by
Peter Eastman
Browse files
Moved header files into an openmm subdirectory
parent
b2c89feb
Changes
178
Show whitespace changes
Inline
Side-by-side
Showing
20 changed files
with
50 additions
and
50 deletions
+50
-50
openmmapi/src/NonbondedForce.cpp
openmmapi/src/NonbondedForce.cpp
+4
-4
openmmapi/src/NonbondedForceImpl.cpp
openmmapi/src/NonbondedForceImpl.cpp
+4
-4
openmmapi/src/OpenMMContext.cpp
openmmapi/src/OpenMMContext.cpp
+3
-3
openmmapi/src/OpenMMContextImpl.cpp
openmmapi/src/OpenMMContextImpl.cpp
+7
-7
openmmapi/src/PeriodicTorsionForce.cpp
openmmapi/src/PeriodicTorsionForce.cpp
+4
-4
openmmapi/src/PeriodicTorsionForceImpl.cpp
openmmapi/src/PeriodicTorsionForceImpl.cpp
+3
-3
openmmapi/src/RBTorsionForce.cpp
openmmapi/src/RBTorsionForce.cpp
+4
-4
openmmapi/src/RBTorsionForceImpl.cpp
openmmapi/src/RBTorsionForceImpl.cpp
+3
-3
openmmapi/src/State.cpp
openmmapi/src/State.cpp
+2
-2
openmmapi/src/System.cpp
openmmapi/src/System.cpp
+2
-2
openmmapi/src/VerletIntegrator.cpp
openmmapi/src/VerletIntegrator.cpp
+4
-4
platforms/brook/include/BrookKernelFactory.h
platforms/brook/include/BrookKernelFactory.h
+1
-1
platforms/brook/include/BrookPlatform.h
platforms/brook/include/BrookPlatform.h
+1
-1
platforms/brook/include/BrookStreamFactory.h
platforms/brook/include/BrookStreamFactory.h
+2
-2
platforms/brook/src/BrookBondParameters.cpp
platforms/brook/src/BrookBondParameters.cpp
+1
-1
platforms/brook/src/BrookBonded.cpp
platforms/brook/src/BrookBonded.cpp
+1
-1
platforms/brook/src/BrookBonded.h
platforms/brook/src/BrookBonded.h
+1
-1
platforms/brook/src/BrookCalcGBSAOBCForceKernel.cpp
platforms/brook/src/BrookCalcGBSAOBCForceKernel.cpp
+1
-1
platforms/brook/src/BrookCalcGBSAOBCForceKernel.h
platforms/brook/src/BrookCalcGBSAOBCForceKernel.h
+1
-1
platforms/brook/src/BrookCalcHarmonicAngleForceKernel.cpp
platforms/brook/src/BrookCalcHarmonicAngleForceKernel.cpp
+1
-1
No files found.
openmmapi/src/NonbondedForce.cpp
View file @
644cc275
...
...
@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "Force.h"
#include "OpenMMException.h"
#include "NonbondedForce.h"
#include "internal/NonbondedForceImpl.h"
#include "
openmm/
Force.h"
#include "
openmm/
OpenMMException.h"
#include "
openmm/
NonbondedForce.h"
#include "
openmm/
internal/NonbondedForceImpl.h"
#include <cmath>
#include <utility>
...
...
openmmapi/src/NonbondedForceImpl.cpp
View file @
644cc275
...
...
@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "OpenMMException.h"
#include "internal/OpenMMContextImpl.h"
#include "internal/NonbondedForceImpl.h"
#include "kernels.h"
#include "
openmm/
OpenMMException.h"
#include "
openmm/
internal/OpenMMContextImpl.h"
#include "
openmm/
internal/NonbondedForceImpl.h"
#include "
openmm/
kernels.h"
#include <sstream>
using
namespace
OpenMM
;
...
...
openmmapi/src/OpenMMContext.cpp
View file @
644cc275
...
...
@@ -29,9 +29,9 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "OpenMMContext.h"
#include "internal/OpenMMContextImpl.h"
#include "OpenMMException.h"
#include "
openmm/
OpenMMContext.h"
#include "
openmm/
internal/OpenMMContextImpl.h"
#include "
openmm/
OpenMMException.h"
using
namespace
OpenMM
;
using
namespace
std
;
...
...
openmmapi/src/OpenMMContextImpl.cpp
View file @
644cc275
...
...
@@ -29,13 +29,13 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "Force.h"
#include "Integrator.h"
#include "OpenMMException.h"
#include "System.h"
#include "kernels.h"
#include "internal/ForceImpl.h"
#include "internal/OpenMMContextImpl.h"
#include "
openmm/
Force.h"
#include "
openmm/
Integrator.h"
#include "
openmm/
OpenMMException.h"
#include "
openmm/
System.h"
#include "
openmm/
kernels.h"
#include "
openmm/
internal/ForceImpl.h"
#include "
openmm/
internal/OpenMMContextImpl.h"
#include <map>
#include <vector>
...
...
openmmapi/src/PeriodicTorsionForce.cpp
View file @
644cc275
...
...
@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "Force.h"
#include "OpenMMException.h"
#include "PeriodicTorsionForce.h"
#include "internal/PeriodicTorsionForceImpl.h"
#include "
openmm/
Force.h"
#include "
openmm/
OpenMMException.h"
#include "
openmm/
PeriodicTorsionForce.h"
#include "
openmm/
internal/PeriodicTorsionForceImpl.h"
using
namespace
OpenMM
;
...
...
openmmapi/src/PeriodicTorsionForceImpl.cpp
View file @
644cc275
...
...
@@ -29,9 +29,9 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "internal/OpenMMContextImpl.h"
#include "internal/PeriodicTorsionForceImpl.h"
#include "kernels.h"
#include "
openmm/
internal/OpenMMContextImpl.h"
#include "
openmm/
internal/PeriodicTorsionForceImpl.h"
#include "
openmm/
kernels.h"
using
namespace
OpenMM
;
using
std
::
pair
;
...
...
openmmapi/src/RBTorsionForce.cpp
View file @
644cc275
...
...
@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "Force.h"
#include "OpenMMException.h"
#include "RBTorsionForce.h"
#include "internal/RBTorsionForceImpl.h"
#include "
openmm/
Force.h"
#include "
openmm/
OpenMMException.h"
#include "
openmm/
RBTorsionForce.h"
#include "
openmm/
internal/RBTorsionForceImpl.h"
using
namespace
OpenMM
;
...
...
openmmapi/src/RBTorsionForceImpl.cpp
View file @
644cc275
...
...
@@ -29,9 +29,9 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "internal/OpenMMContextImpl.h"
#include "internal/RBTorsionForceImpl.h"
#include "kernels.h"
#include "
openmm/
internal/OpenMMContextImpl.h"
#include "
openmm/
internal/RBTorsionForceImpl.h"
#include "
openmm/
kernels.h"
using
namespace
OpenMM
;
using
std
::
pair
;
...
...
openmmapi/src/State.cpp
View file @
644cc275
...
...
@@ -29,8 +29,8 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "OpenMMException.h"
#include "State.h"
#include "
openmm/
OpenMMException.h"
#include "
openmm/
State.h"
using
namespace
OpenMM
;
using
namespace
std
;
...
...
openmmapi/src/System.cpp
View file @
644cc275
...
...
@@ -29,8 +29,8 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "Force.h"
#include "System.h"
#include "
openmm/
Force.h"
#include "
openmm/
System.h"
using
namespace
OpenMM
;
...
...
openmmapi/src/VerletIntegrator.cpp
View file @
644cc275
...
...
@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "VerletIntegrator.h"
#include "OpenMMContext.h"
#include "internal/OpenMMContextImpl.h"
#include "kernels.h"
#include "
openmm/
VerletIntegrator.h"
#include "
openmm/
OpenMMContext.h"
#include "
openmm/
internal/OpenMMContextImpl.h"
#include "
openmm/
kernels.h"
#include <string>
using
namespace
OpenMM
;
...
...
platforms/brook/include/BrookKernelFactory.h
View file @
644cc275
...
...
@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "KernelFactory.h"
#include "
openmm/
KernelFactory.h"
namespace
OpenMM
{
...
...
platforms/brook/include/BrookPlatform.h
View file @
644cc275
...
...
@@ -36,7 +36,7 @@
#define BrookOpenMMFloat float
#include "Platform.h"
#include "
openmm/
Platform.h"
#include "BrookStreamFactory.h"
namespace
OpenMM
{
...
...
platforms/brook/include/BrookStreamFactory.h
View file @
644cc275
...
...
@@ -32,8 +32,8 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "StreamFactory.h"
#include "Platform.h"
#include "
openmm/
StreamFactory.h"
#include "
openmm/
Platform.h"
namespace
OpenMM
{
...
...
platforms/brook/src/BrookBondParameters.cpp
View file @
644cc275
...
...
@@ -31,7 +31,7 @@
#include <sstream>
#include "BrookBondParameters.h"
#include "OpenMMException.h"
#include "
openmm/
OpenMMException.h"
using
namespace
OpenMM
;
using
namespace
std
;
...
...
platforms/brook/src/BrookBonded.cpp
View file @
644cc275
...
...
@@ -34,7 +34,7 @@
#include "BrookBonded.h"
#include "BrookPlatform.h"
#include "BrookStreamFactory.h"
#include "OpenMMException.h"
#include "
openmm/
OpenMMException.h"
#include "kernels/kinvmap_gather.h"
#include "kernels/invmap.h"
#include "kernels/kforce.h"
...
...
platforms/brook/src/BrookBonded.h
View file @
644cc275
...
...
@@ -36,7 +36,7 @@
#include "BrookStreamImpl.h"
#include "BrookCommon.h"
#include "OpenMMContext.h"
#include "
openmm/
OpenMMContext.h"
#include "BrookBondParameters.h"
namespace
OpenMM
{
...
...
platforms/brook/src/BrookCalcGBSAOBCForceKernel.cpp
View file @
644cc275
...
...
@@ -31,7 +31,7 @@
#include <cmath>
#include <limits>
#include "OpenMMException.h"
#include "
openmm/
OpenMMException.h"
#include <sstream>
#include "BrookStreamImpl.h"
...
...
platforms/brook/src/BrookCalcGBSAOBCForceKernel.h
View file @
644cc275
...
...
@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "kernels.h"
#include "
openmm/
kernels.h"
#include "../../reference/src/SimTKUtilities/SimTKOpenMMRealType.h"
#include "BrookGbsa.h"
#include "OpenMMBrookInterface.h"
...
...
platforms/brook/src/BrookCalcHarmonicAngleForceKernel.cpp
View file @
644cc275
...
...
@@ -29,7 +29,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "OpenMMException.h"
#include "
openmm/
OpenMMException.h"
#include <sstream>
#include "BrookCalcHarmonicAngleForceKernel.h"
...
...
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