Commit 644cc275 authored by Peter Eastman's avatar Peter Eastman
Browse files

Moved header files into an openmm subdirectory

parent b2c89feb
...@@ -29,10 +29,10 @@ ...@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "Force.h" #include "openmm/Force.h"
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include "NonbondedForce.h" #include "openmm/NonbondedForce.h"
#include "internal/NonbondedForceImpl.h" #include "openmm/internal/NonbondedForceImpl.h"
#include <cmath> #include <cmath>
#include <utility> #include <utility>
......
...@@ -29,10 +29,10 @@ ...@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include "internal/OpenMMContextImpl.h" #include "openmm/internal/OpenMMContextImpl.h"
#include "internal/NonbondedForceImpl.h" #include "openmm/internal/NonbondedForceImpl.h"
#include "kernels.h" #include "openmm/kernels.h"
#include <sstream> #include <sstream>
using namespace OpenMM; using namespace OpenMM;
......
...@@ -29,9 +29,9 @@ ...@@ -29,9 +29,9 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "OpenMMContext.h" #include "openmm/OpenMMContext.h"
#include "internal/OpenMMContextImpl.h" #include "openmm/internal/OpenMMContextImpl.h"
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
using namespace OpenMM; using namespace OpenMM;
using namespace std; using namespace std;
......
...@@ -29,13 +29,13 @@ ...@@ -29,13 +29,13 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "Force.h" #include "openmm/Force.h"
#include "Integrator.h" #include "openmm/Integrator.h"
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include "System.h" #include "openmm/System.h"
#include "kernels.h" #include "openmm/kernels.h"
#include "internal/ForceImpl.h" #include "openmm/internal/ForceImpl.h"
#include "internal/OpenMMContextImpl.h" #include "openmm/internal/OpenMMContextImpl.h"
#include <map> #include <map>
#include <vector> #include <vector>
......
...@@ -29,10 +29,10 @@ ...@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "Force.h" #include "openmm/Force.h"
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include "PeriodicTorsionForce.h" #include "openmm/PeriodicTorsionForce.h"
#include "internal/PeriodicTorsionForceImpl.h" #include "openmm/internal/PeriodicTorsionForceImpl.h"
using namespace OpenMM; using namespace OpenMM;
......
...@@ -29,9 +29,9 @@ ...@@ -29,9 +29,9 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "internal/OpenMMContextImpl.h" #include "openmm/internal/OpenMMContextImpl.h"
#include "internal/PeriodicTorsionForceImpl.h" #include "openmm/internal/PeriodicTorsionForceImpl.h"
#include "kernels.h" #include "openmm/kernels.h"
using namespace OpenMM; using namespace OpenMM;
using std::pair; using std::pair;
......
...@@ -29,10 +29,10 @@ ...@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "Force.h" #include "openmm/Force.h"
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include "RBTorsionForce.h" #include "openmm/RBTorsionForce.h"
#include "internal/RBTorsionForceImpl.h" #include "openmm/internal/RBTorsionForceImpl.h"
using namespace OpenMM; using namespace OpenMM;
......
...@@ -29,9 +29,9 @@ ...@@ -29,9 +29,9 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "internal/OpenMMContextImpl.h" #include "openmm/internal/OpenMMContextImpl.h"
#include "internal/RBTorsionForceImpl.h" #include "openmm/internal/RBTorsionForceImpl.h"
#include "kernels.h" #include "openmm/kernels.h"
using namespace OpenMM; using namespace OpenMM;
using std::pair; using std::pair;
......
...@@ -29,8 +29,8 @@ ...@@ -29,8 +29,8 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include "State.h" #include "openmm/State.h"
using namespace OpenMM; using namespace OpenMM;
using namespace std; using namespace std;
......
...@@ -29,8 +29,8 @@ ...@@ -29,8 +29,8 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "Force.h" #include "openmm/Force.h"
#include "System.h" #include "openmm/System.h"
using namespace OpenMM; using namespace OpenMM;
......
...@@ -29,10 +29,10 @@ ...@@ -29,10 +29,10 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "VerletIntegrator.h" #include "openmm/VerletIntegrator.h"
#include "OpenMMContext.h" #include "openmm/OpenMMContext.h"
#include "internal/OpenMMContextImpl.h" #include "openmm/internal/OpenMMContextImpl.h"
#include "kernels.h" #include "openmm/kernels.h"
#include <string> #include <string>
using namespace OpenMM; using namespace OpenMM;
......
...@@ -32,7 +32,7 @@ ...@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "KernelFactory.h" #include "openmm/KernelFactory.h"
namespace OpenMM { namespace OpenMM {
......
...@@ -36,7 +36,7 @@ ...@@ -36,7 +36,7 @@
#define BrookOpenMMFloat float #define BrookOpenMMFloat float
#include "Platform.h" #include "openmm/Platform.h"
#include "BrookStreamFactory.h" #include "BrookStreamFactory.h"
namespace OpenMM { namespace OpenMM {
......
...@@ -32,8 +32,8 @@ ...@@ -32,8 +32,8 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "StreamFactory.h" #include "openmm/StreamFactory.h"
#include "Platform.h" #include "openmm/Platform.h"
namespace OpenMM { namespace OpenMM {
......
...@@ -31,7 +31,7 @@ ...@@ -31,7 +31,7 @@
#include <sstream> #include <sstream>
#include "BrookBondParameters.h" #include "BrookBondParameters.h"
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
using namespace OpenMM; using namespace OpenMM;
using namespace std; using namespace std;
......
...@@ -34,7 +34,7 @@ ...@@ -34,7 +34,7 @@
#include "BrookBonded.h" #include "BrookBonded.h"
#include "BrookPlatform.h" #include "BrookPlatform.h"
#include "BrookStreamFactory.h" #include "BrookStreamFactory.h"
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include "kernels/kinvmap_gather.h" #include "kernels/kinvmap_gather.h"
#include "kernels/invmap.h" #include "kernels/invmap.h"
#include "kernels/kforce.h" #include "kernels/kforce.h"
......
...@@ -36,7 +36,7 @@ ...@@ -36,7 +36,7 @@
#include "BrookStreamImpl.h" #include "BrookStreamImpl.h"
#include "BrookCommon.h" #include "BrookCommon.h"
#include "OpenMMContext.h" #include "openmm/OpenMMContext.h"
#include "BrookBondParameters.h" #include "BrookBondParameters.h"
namespace OpenMM { namespace OpenMM {
......
...@@ -31,7 +31,7 @@ ...@@ -31,7 +31,7 @@
#include <cmath> #include <cmath>
#include <limits> #include <limits>
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include <sstream> #include <sstream>
#include "BrookStreamImpl.h" #include "BrookStreamImpl.h"
......
...@@ -32,7 +32,7 @@ ...@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "kernels.h" #include "openmm/kernels.h"
#include "../../reference/src/SimTKUtilities/SimTKOpenMMRealType.h" #include "../../reference/src/SimTKUtilities/SimTKOpenMMRealType.h"
#include "BrookGbsa.h" #include "BrookGbsa.h"
#include "OpenMMBrookInterface.h" #include "OpenMMBrookInterface.h"
......
...@@ -29,7 +29,7 @@ ...@@ -29,7 +29,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. * * USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */ * -------------------------------------------------------------------------- */
#include "OpenMMException.h" #include "openmm/OpenMMException.h"
#include <sstream> #include <sstream>
#include "BrookCalcHarmonicAngleForceKernel.h" #include "BrookCalcHarmonicAngleForceKernel.h"
......
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