Moved header files into an openmm subdirectory

platforms/reference/src/sfmt/SFMT.h

@@ -32,7 +32,7 @@
 #define SFMT_H
 
 #include <stdio.h>
-#include "internal/windowsExport.h"
+#include "openmm/internal/windowsExport.h"
 
 #if defined(__STDC_VERSION__) && (__STDC_VERSION__ >= 199901L)
   #include <inttypes.h>

platforms/reference/tests/TestReferenceAndersenThermostat.cpp

@@ -34,12 +34,12 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "AndersenThermostat.h"
-#include "OpenMMContext.h"
+#include "openmm/AndersenThermostat.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "NonbondedForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/NonbondedForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include "../src/sfmt/SFMT.h"
 #include <iostream>

platforms/reference/tests/TestReferenceBrownianIntegrator.cpp

@@ -34,12 +34,12 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "HarmonicBondForce.h"
-#include "NonbondedForce.h"
-#include "System.h"
-#include "BrownianIntegrator.h"
+#include "openmm/HarmonicBondForce.h"
+#include "openmm/NonbondedForce.h"
+#include "openmm/System.h"
+#include "openmm/BrownianIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include "../src/sfmt/SFMT.h"
 #include <iostream>

platforms/reference/tests/TestReferenceCMMotionRemover.cpp

@@ -34,13 +34,13 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "CMMotionRemover.h"
-#include "OpenMMContext.h"
+#include "openmm/CMMotionRemover.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "HarmonicBondForce.h"
-#include "NonbondedForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/HarmonicBondForce.h"
+#include "openmm/NonbondedForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include "../src/sfmt/SFMT.h"
 #include <iostream>

platforms/reference/tests/TestReferenceEwald.cpp

@@ -34,13 +34,13 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "NonbondedForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/NonbondedForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
-#include "HarmonicBondForce.h"
+#include "openmm/HarmonicBondForce.h"
 #include <iostream>
 #include <vector>
 

platforms/reference/tests/TestReferenceGBSAOBCForce.cpp

@@ -34,12 +34,12 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "GBSAOBCForce.h"
-#include "System.h"
-#include "LangevinIntegrator.h"
-#include "NonbondedForce.h"
+#include "openmm/GBSAOBCForce.h"
+#include "openmm/System.h"
+#include "openmm/LangevinIntegrator.h"
+#include "openmm/NonbondedForce.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include "../src/sfmt/SFMT.h"
 #include <iostream>

platforms/reference/tests/TestReferenceGBVIForce.cpp

@@ -34,14 +34,14 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "HarmonicBondForce.h"
-#include "GBVIForce.h"
-#include "GBSAOBCForce.h"
-#include "System.h"
-#include "LangevinIntegrator.h"
-#include "NonbondedForce.h"
+#include "openmm/HarmonicBondForce.h"
+#include "openmm/GBVIForce.h"
+#include "openmm/GBSAOBCForce.h"
+#include "openmm/System.h"
+#include "openmm/LangevinIntegrator.h"
+#include "openmm/NonbondedForce.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include "../src/sfmt/SFMT.h"
 #include <iostream>

platforms/reference/tests/TestReferenceHarmonicAngleForce.cpp

@@ -34,11 +34,11 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "HarmonicAngleForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/HarmonicAngleForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include <iostream>
 #include <vector>

platforms/reference/tests/TestReferenceHarmonicBondForce.cpp

@@ -34,11 +34,11 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "HarmonicBondForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/HarmonicBondForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include <iostream>
 #include <vector>

platforms/reference/tests/TestReferenceKineticEnergy.cpp

@@ -34,10 +34,10 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include <iostream>
 #include <vector>
 

platforms/reference/tests/TestReferenceLangevinIntegrator.cpp

@@ -34,12 +34,12 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "HarmonicBondForce.h"
-#include "NonbondedForce.h"
-#include "System.h"
-#include "LangevinIntegrator.h"
+#include "openmm/HarmonicBondForce.h"
+#include "openmm/NonbondedForce.h"
+#include "openmm/System.h"
+#include "openmm/LangevinIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include "../src/sfmt/SFMT.h"
 #include <iostream>

platforms/reference/tests/TestReferenceNeighborList.cpp

+/* -------------------------------------------------------------------------- *
+ *                                   OpenMM                                   *
+ * -------------------------------------------------------------------------- *
+ * This is part of the OpenMM molecular simulation toolkit originating from   *
+ * Simbios, the NIH National Center for Physics-Based Simulation of           *
+ * Biological Structures at Stanford, funded under the NIH Roadmap for        *
+ * Medical Research, grant U54 GM072970. See https://simtk.org.               *
+ *                                                                            *
+ * Portions copyright (c) 2008 Stanford University and the Authors.           *
+ * Authors: Peter Eastman                                                     *
+ * Contributors:                                                              *
+ *                                                                            *
+ * Permission is hereby granted, free of charge, to any person obtaining a    *
+ * copy of this software and associated documentation files (the "Software"), *
+ * to deal in the Software without restriction, including without limitation  *
+ * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
+ * and/or sell copies of the Software, and to permit persons to whom the      *
+ * Software is furnished to do so, subject to the following conditions:       *
+ *                                                                            *
+ * The above copyright notice and this permission notice shall be included in *
+ * all copies or substantial portions of the Software.                        *
+ *                                                                            *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
+ * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
+ * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
+ * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
+ * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
+ * -------------------------------------------------------------------------- */
+
 #include "../../../tests/AssertionUtilities.h"
 #include "../src/SimTKReference/ReferenceNeighborList.h"
 #include "../src/sfmt/SFMT.h"

platforms/reference/tests/TestReferenceNonbondedForce.cpp

@@ -34,13 +34,13 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "NonbondedForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/NonbondedForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
-#include "HarmonicBondForce.h"
+#include "openmm/HarmonicBondForce.h"
 #include <iostream>
 #include <vector>
 

platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp

@@ -34,11 +34,11 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "PeriodicTorsionForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/PeriodicTorsionForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include <iostream>
 #include <vector>

platforms/reference/tests/TestReferenceRBTorsionForce.cpp

@@ -34,11 +34,11 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "RBTorsionForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/RBTorsionForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include <iostream>
 #include <vector>

platforms/reference/tests/TestReferenceVerletIntegrator.cpp

@@ -34,12 +34,12 @@
  */
 
 #include "../../../tests/AssertionUtilities.h"
-#include "OpenMMContext.h"
+#include "openmm/OpenMMContext.h"
 #include "ReferencePlatform.h"
-#include "HarmonicBondForce.h"
-#include "NonbondedForce.h"
-#include "System.h"
-#include "VerletIntegrator.h"
+#include "openmm/HarmonicBondForce.h"
+#include "openmm/NonbondedForce.h"
+#include "openmm/System.h"
+#include "openmm/VerletIntegrator.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"
 #include "../src/sfmt/SFMT.h"
 #include <iostream>

tests/AssertionUtilities.h

@@ -36,7 +36,7 @@
  * This file provides a variety of macros useful in test cases.
  */
 
-#include "OpenMMException.h"
+#include "openmm/OpenMMException.h"
 #include <cmath>
 #include <string>
 #include <sstream>

tests/TestFindExclusions.cpp

@@ -39,7 +39,7 @@
  */
 
 #include "AssertionUtilities.h"
-#include "NonbondedForce.h"
+#include "openmm/NonbondedForce.h"
 #include <iostream>
 #include <set>
 #include <vector>