Merge https://github.com/SimTk/openmm

5587fac9 · Lee-Ping Wang · 7a55f02c · 73882ac5 · 5587fac9 · 5587fac9
Commit 5587fac9 authored Jul 11, 2013 by Lee-Ping Wang
20 changed files
--- a/platforms/reference/src/SimTKReference/ReferenceCustomTorsionIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomTorsionIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceForce.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceForce.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceHarmonicBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceHarmonicBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceLJCoulomb14.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceLJCoulomb14.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceLincsAlgorithm.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceLincsAlgorithm.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp
--- a/platforms/reference/src/SimTKReference/ReferencePairIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferencePairIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceProperDihedralBond.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceProperDihedralBond.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceRbDihedralBond.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceRbDihedralBond.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceShakeAlgorithm.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceShakeAlgorithm.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceVariableStochasticDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceVariableStochasticDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceVariableVerletDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceVariableVerletDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceVerletDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceVerletDynamics.cpp
--- a/platforms/reference/src/gbsa/CpuGBVI.cpp
+++ b/platforms/reference/src/gbsa/CpuGBVI.cpp
--- a/platforms/reference/src/gbsa/CpuObc.cpp
+++ b/platforms/reference/src/gbsa/CpuObc.cpp
--- a/platforms/reference/src/gbsa/GBVIParameters.cpp
+++ b/platforms/reference/src/gbsa/GBVIParameters.cpp
--- a/platforms/reference/src/gbsa/ObcParameters.cpp
+++ b/platforms/reference/src/gbsa/ObcParameters.cpp