Merge https://github.com/SimTk/openmm

5587fac9 · Lee-Ping Wang · 7a55f02c · 73882ac5 · 5587fac9 · 5587fac9
Commit 5587fac9 authored Jul 11, 2013 by Lee-Ping Wang
20 changed files
--- a/platforms/reference/src/SimTKUtilities/SimTKOpenMMUtilities.h
+++ b/platforms/reference/src/SimTKUtilities/SimTKOpenMMUtilities.h
--- a/platforms/reference/src/SimTKReference/fftpack.h
+++ b/platforms/reference/src/SimTKReference/fftpack.h
--- a/platforms/reference/src/ReferenceKernels.cpp
+++ b/platforms/reference/src/ReferenceKernels.cpp
--- a/platforms/reference/src/ReferencePlatform.cpp
+++ b/platforms/reference/src/ReferencePlatform.cpp
--- a/platforms/reference/src/SimTKReference/PME.h
+++ b/platforms/reference/src/SimTKReference/PME.h
--- a/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceConstraint.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceConstraint.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp