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Unverified Commit 551d83c9 authored by Peter Eastman's avatar Peter Eastman Committed by GitHub
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Minor clarification to manual (#3362) 

* Minor clarification to manual

* Another minor clarification
parent 0c82c264
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docs-source/usersguide/application/05_creating_ffs.rst
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...@@ -78,6 +78,7 @@ The :code:`<ForceField>` tag contains the following children: ...@@ -78,6 +78,7 @@ The :code:`<ForceField>` tag contains the following children:
* An :code:`<AtomTypes>` tag containing the atom type definitions * An :code:`<AtomTypes>` tag containing the atom type definitions
* A :code:`<Residues>` tag containing the residue template definitions * A :code:`<Residues>` tag containing the residue template definitions
* Optionally a :code:`<Patches>` tag containing patch definitions
* Zero or more tags defining specific forces * Zero or more tags defining specific forces
...@@ -203,6 +204,7 @@ Here is an example of a patch definition: ...@@ -203,6 +204,7 @@ Here is an example of a patch definition:
.. code-block:: xml .. code-block:: xml
<Patches>
<Patch name="NTER"> <Patch name="NTER">
<RemoveAtom name="H"/> <RemoveAtom name="H"/>
<RemoveBond atomName1="N" atomName2="H"/> <RemoveBond atomName1="N" atomName2="H"/>
...@@ -215,6 +217,7 @@ Here is an example of a patch definition: ...@@ -215,6 +217,7 @@ Here is an example of a patch definition:
<RemoveExternalBond atomName="N"/> <RemoveExternalBond atomName="N"/>
<ChangeAtom name="N" type="N3"/> <ChangeAtom name="N" type="N3"/>
</Patch> </Patch>
</Patches>
There is one :code:`<Patch>` tag for each patch definition. That in turn may There is one :code:`<Patch>` tag for each patch definition. That in turn may
contain any of the following tags: contain any of the following tags:
......
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