Created reference implementation of rigid shake algorithm. Added the JAMA package to OpenMM.

52a68c81 · Peter Eastman · 671419fa · 52a68c81 · 52a68c81 · 52a68c81
Commit 52a68c81 authored May 01, 2009 by Peter Eastman
11 changed files
--- a/jama/include/tnt_i_refvec.h
+++ b/jama/include/tnt_i_refvec.h
--- a/jama/include/tnt_math_utils.h
+++ b/jama/include/tnt_math_utils.h
--- a/jama/include/tnt_sparse_matrix_csr.h
+++ b/jama/include/tnt_sparse_matrix_csr.h
--- a/jama/include/tnt_stopwatch.h
+++ b/jama/include/tnt_stopwatch.h
--- a/jama/include/tnt_subscript.h
+++ b/jama/include/tnt_subscript.h
--- a/jama/include/tnt_vec.h
+++ b/jama/include/tnt_vec.h
--- a/jama/include/tnt_version.h
+++ b/jama/include/tnt_version.h
--- a/platforms/reference/src/ReferenceKernels.cpp
+++ b/platforms/reference/src/ReferenceKernels.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceRigidShakeAlgorithm.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceRigidShakeAlgorithm.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceRigidShakeAlgorithm.h
+++ b/platforms/reference/src/SimTKReference/ReferenceRigidShakeAlgorithm.h
--- a/platforms/reference/tests/TestReferenceVerletIntegrator.cpp
+++ b/platforms/reference/tests/TestReferenceVerletIntegrator.cpp