Merge branch 'master' into gbn-chk

3db6b8ee · Jason Swails · 5d8e92ff · 3a80b0f1 · 3db6b8ee · 3db6b8ee
Commit 3db6b8ee authored Feb 07, 2015 by Jason Swails
20 changed files
--- a/platforms/reference/include/ReferencePME.h
+++ b/platforms/reference/include/ReferencePME.h
--- a/platforms/reference/include/ReferencePlatform.h
+++ b/platforms/reference/include/ReferencePlatform.h
@@ -66,6 +66,7 @@ public:
    void* velocities;
    void* forces;
    void* periodicBoxSize;
+    void* periodicBoxVectors;
    void* constraints;
 };
 } // namespace OpenMM

--- a/platforms/reference/src/ReferenceKernels.cpp
+++ b/platforms/reference/src/ReferenceKernels.cpp
--- a/platforms/reference/src/ReferencePlatform.cpp
+++ b/platforms/reference/src/ReferencePlatform.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceForce.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceForce.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp
--- a/platforms/reference/src/SimTKReference/ReferencePME.cpp
+++ b/platforms/reference/src/SimTKReference/ReferencePME.cpp
--- a/platforms/reference/src/gbsa/GBVIParameters.cpp
+++ b/platforms/reference/src/gbsa/GBVIParameters.cpp
--- a/platforms/reference/src/gbsa/ObcParameters.cpp
+++ b/platforms/reference/src/gbsa/ObcParameters.cpp
--- a/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp
--- a/platforms/reference/tests/TestReferenceEwald.cpp
+++ b/platforms/reference/tests/TestReferenceEwald.cpp
--- a/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp
+++ b/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp
--- a/platforms/reference/tests/TestReferenceNeighborList.cpp
+++ b/platforms/reference/tests/TestReferenceNeighborList.cpp