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tsoc
openmm
Commits
3c8adf0c
Commit
3c8adf0c
authored
Oct 31, 2012
by
Peter Eastman
Browse files
OpenCL and CUDA tests are run three times, once for each precision model
parent
6f4ec6b6
Changes
80
Show whitespace changes
Inline
Side-by-side
Showing
20 changed files
with
108 additions
and
84 deletions
+108
-84
platforms/cuda/tests/TestCudaLocalEnergyMinimizer.cpp
platforms/cuda/tests/TestCudaLocalEnergyMinimizer.cpp
+5
-4
platforms/cuda/tests/TestCudaMonteCarloBarostat.cpp
platforms/cuda/tests/TestCudaMonteCarloBarostat.cpp
+5
-5
platforms/cuda/tests/TestCudaMultipleForces.cpp
platforms/cuda/tests/TestCudaMultipleForces.cpp
+6
-3
platforms/cuda/tests/TestCudaNonbondedForce.cpp
platforms/cuda/tests/TestCudaNonbondedForce.cpp
+8
-15
platforms/cuda/tests/TestCudaPeriodicTorsionForce.cpp
platforms/cuda/tests/TestCudaPeriodicTorsionForce.cpp
+5
-3
platforms/cuda/tests/TestCudaRBTorsionForce.cpp
platforms/cuda/tests/TestCudaRBTorsionForce.cpp
+5
-3
platforms/cuda/tests/TestCudaRandom.cpp
platforms/cuda/tests/TestCudaRandom.cpp
+6
-4
platforms/cuda/tests/TestCudaSettle.cpp
platforms/cuda/tests/TestCudaSettle.cpp
+5
-2
platforms/cuda/tests/TestCudaSort.cpp
platforms/cuda/tests/TestCudaSort.cpp
+6
-3
platforms/cuda/tests/TestCudaVariableLangevinIntegrator.cpp
platforms/cuda/tests/TestCudaVariableLangevinIntegrator.cpp
+5
-5
platforms/cuda/tests/TestCudaVariableVerletIntegrator.cpp
platforms/cuda/tests/TestCudaVariableVerletIntegrator.cpp
+5
-5
platforms/cuda/tests/TestCudaVerletIntegrator.cpp
platforms/cuda/tests/TestCudaVerletIntegrator.cpp
+5
-5
platforms/cuda/tests/TestCudaVirtualSites.cpp
platforms/cuda/tests/TestCudaVirtualSites.cpp
+5
-7
platforms/opencl/tests/CMakeLists.txt
platforms/opencl/tests/CMakeLists.txt
+7
-1
platforms/opencl/tests/TestOpenCLAndersenThermostat.cpp
platforms/opencl/tests/TestOpenCLAndersenThermostat.cpp
+5
-4
platforms/opencl/tests/TestOpenCLBrownianIntegrator.cpp
platforms/opencl/tests/TestOpenCLBrownianIntegrator.cpp
+5
-5
platforms/opencl/tests/TestOpenCLCMAPTorsionForce.cpp
platforms/opencl/tests/TestOpenCLCMAPTorsionForce.cpp
+5
-2
platforms/opencl/tests/TestOpenCLCMMotionRemover.cpp
platforms/opencl/tests/TestOpenCLCMMotionRemover.cpp
+5
-2
platforms/opencl/tests/TestOpenCLCheckpoints.cpp
platforms/opencl/tests/TestOpenCLCheckpoints.cpp
+5
-2
platforms/opencl/tests/TestOpenCLCustomAngleForce.cpp
platforms/opencl/tests/TestOpenCLCustomAngleForce.cpp
+5
-4
No files found.
platforms/cuda/tests/TestCudaLocalEnergyMinimizer.cpp
View file @
3c8adf0c
...
...
@@ -45,6 +45,8 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
void
testHarmonicBonds
()
{
const
int
numParticles
=
10
;
System
system
;
...
...
@@ -64,7 +66,6 @@ void testHarmonicBonds() {
// Minimize it and check that all bonds are at their equilibrium distances.
VerletIntegrator
integrator
(
0.01
);
CudaPlatform
platform
;
Context
context
(
system
,
integrator
,
platform
);
context
.
setPositions
(
positions
);
LocalEnergyMinimizer
::
minimize
(
context
,
1e-5
);
...
...
@@ -105,7 +106,6 @@ void testLargeSystem() {
// Minimize it and verify that the energy has decreased.
CudaPlatform
platform
;
VerletIntegrator
integrator
(
0.01
);
Context
context
(
system
,
integrator
,
platform
);
context
.
setPositions
(
positions
);
...
...
@@ -167,7 +167,6 @@ void testVirtualSites() {
// Minimize it and verify that the energy has decreased.
CudaPlatform
platform
;
VerletIntegrator
integrator
(
0.01
);
Context
context
(
system
,
integrator
,
platform
);
context
.
setPositions
(
positions
);
...
...
@@ -199,8 +198,10 @@ void testVirtualSites() {
ASSERT
(
forceNorm
<
3
*
tolerance
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testHarmonicBonds
();
testLargeSystem
();
testVirtualSites
();
...
...
platforms/cuda/tests/TestCudaMonteCarloBarostat.cpp
View file @
3c8adf0c
...
...
@@ -49,8 +49,9 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
void
testChangingBoxSize
()
{
CudaPlatform
platform
;
System
system
;
system
.
setDefaultPeriodicBoxVectors
(
Vec3
(
4
,
0
,
0
),
Vec3
(
0
,
5
,
0
),
Vec3
(
0
,
0
,
6
));
system
.
addParticle
(
1.0
);
...
...
@@ -100,7 +101,6 @@ void testIdealGas() {
// Create a gas of noninteracting particles.
CudaPlatform
platform
;
System
system
;
system
.
setDefaultPeriodicBoxVectors
(
Vec3
(
initialLength
,
0
,
0
),
Vec3
(
0
,
0.5
*
initialLength
,
0
),
Vec3
(
0
,
0
,
2
*
initialLength
));
vector
<
Vec3
>
positions
(
numParticles
);
...
...
@@ -146,7 +146,6 @@ void testRandomSeed() {
const
int
numParticles
=
8
;
const
double
temp
=
100.0
;
const
double
pressure
=
1.5
;
CudaPlatform
platform
;
System
system
;
system
.
setDefaultPeriodicBoxVectors
(
Vec3
(
8
,
0
,
0
),
Vec3
(
0
,
8
,
0
),
Vec3
(
0
,
0
,
8
));
VerletIntegrator
integrator
(
0.01
);
...
...
@@ -219,7 +218,6 @@ void testWater() {
// Create a box of SPC water molecules.
CudaPlatform
platform
;
System
system
;
system
.
setDefaultPeriodicBoxVectors
(
Vec3
(
gridSize
*
spacing
,
0
,
0
),
Vec3
(
0
,
gridSize
*
spacing
,
0
),
Vec3
(
0
,
0
,
gridSize
*
spacing
));
NonbondedForce
*
nonbonded
=
new
NonbondedForce
();
...
...
@@ -273,8 +271,10 @@ void testWater() {
ASSERT_USUALLY_EQUAL_TOL
(
1.0
,
density
,
0.02
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testChangingBoxSize
();
testIdealGas
();
testRandomSeed
();
...
...
platforms/cuda/tests/TestCudaMultipleForces.cpp
View file @
3c8adf0c
...
...
@@ -52,6 +52,8 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
const
double
TOL
=
1e-4
;
void
testForces
()
{
...
...
@@ -78,9 +80,8 @@ void testForces() {
ReferencePlatform
ref
;
VerletIntegrator
integrator1
(
0.01
);
Context
context1
(
system
,
integrator1
,
ref
);
CudaPlatform
cl
;
VerletIntegrator
integrator2
(
0.01
);
Context
context2
(
system
,
integrator2
,
cl
);
Context
context2
(
system
,
integrator2
,
platform
);
OpenMM_SFMT
::
SFMT
sfmt
;
init_gen_rand
(
0
,
sfmt
);
vector
<
Vec3
>
positions
(
numParticles
);
...
...
@@ -97,8 +98,10 @@ void testForces() {
ASSERT_EQUAL_TOL
(
state1
.
getPotentialEnergy
(),
state2
.
getPotentialEnergy
(),
TOL
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testForces
();
}
catch
(
const
exception
&
e
)
{
...
...
platforms/cuda/tests/TestCudaNonbondedForce.cpp
View file @
3c8adf0c
...
...
@@ -53,10 +53,11 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
const
double
TOL
=
1e-5
;
void
testCoulomb
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -79,7 +80,6 @@ void testCoulomb() {
}
void
testLJ
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -104,7 +104,6 @@ void testLJ() {
}
void
testExclusionsAnd14
()
{
CudaPlatform
platform
;
System
system
;
NonbondedForce
*
nonbonded
=
new
NonbondedForce
();
for
(
int
i
=
0
;
i
<
5
;
++
i
)
{
...
...
@@ -192,7 +191,6 @@ void testExclusionsAnd14() {
}
void
testCutoff
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -229,7 +227,6 @@ void testCutoff() {
}
void
testCutoff14
()
{
CudaPlatform
platform
;
System
system
;
VerletIntegrator
integrator
(
0.01
);
NonbondedForce
*
nonbonded
=
new
NonbondedForce
();
...
...
@@ -325,7 +322,6 @@ void testCutoff14() {
}
void
testPeriodic
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -366,7 +362,6 @@ void testLargeSystem() {
const
double
cutoff
=
2.0
;
const
double
boxSize
=
20.0
;
const
double
tol
=
2e-3
;
CudaPlatform
cl
;
ReferencePlatform
reference
;
System
system
;
for
(
int
i
=
0
;
i
<
numParticles
;
i
++
)
...
...
@@ -404,7 +399,7 @@ void testLargeSystem() {
system
.
addForce
(
bonds
);
VerletIntegrator
integrator1
(
0.01
);
VerletIntegrator
integrator2
(
0.01
);
Context
cuContext
(
system
,
integrator1
,
cl
);
Context
cuContext
(
system
,
integrator1
,
platform
);
Context
referenceContext
(
system
,
integrator2
,
reference
);
cuContext
.
setPositions
(
positions
);
cuContext
.
setVelocities
(
velocities
);
...
...
@@ -450,7 +445,6 @@ void testBlockInteractions(bool periodic) {
const
int
numParticles
=
blockSize
*
numBlocks
;
const
double
cutoff
=
1.0
;
const
double
boxSize
=
(
periodic
?
5.1
:
1.1
);
CudaPlatform
cl
;
System
system
;
VerletIntegrator
integrator
(
0.01
);
NonbondedForce
*
nonbonded
=
new
NonbondedForce
();
...
...
@@ -467,7 +461,7 @@ void testBlockInteractions(bool periodic) {
nonbonded
->
setCutoffDistance
(
cutoff
);
system
.
setDefaultPeriodicBoxVectors
(
Vec3
(
boxSize
,
0
,
0
),
Vec3
(
0
,
boxSize
,
0
),
Vec3
(
0
,
0
,
boxSize
));
system
.
addForce
(
nonbonded
);
Context
context
(
system
,
integrator
,
cl
);
Context
context
(
system
,
integrator
,
platform
);
context
.
setPositions
(
positions
);
ContextImpl
*
contextImpl
=
*
reinterpret_cast
<
ContextImpl
**>
(
&
context
);
CudaPlatform
::
PlatformData
&
data
=
*
static_cast
<
CudaPlatform
::
PlatformData
*>
(
contextImpl
->
getPlatformData
());
...
...
@@ -628,7 +622,6 @@ void testDispersionCorrection() {
int
numParticles
=
gridSize
*
gridSize
*
gridSize
;
double
boxSize
=
gridSize
*
0.5
;
double
cutoff
=
boxSize
/
3
;
CudaPlatform
platform
;
System
system
;
VerletIntegrator
integrator
(
0.01
);
NonbondedForce
*
nonbonded
=
new
NonbondedForce
();
...
...
@@ -695,7 +688,6 @@ void testChangingParameters() {
const
double
cutoff
=
2.0
;
const
double
boxSize
=
20.0
;
const
double
tol
=
2e-3
;
CudaPlatform
cl
;
ReferencePlatform
reference
;
System
system
;
for
(
int
i
=
0
;
i
<
numParticles
;
i
++
)
...
...
@@ -728,7 +720,7 @@ void testChangingParameters() {
VerletIntegrator
integrator1
(
0.01
);
VerletIntegrator
integrator2
(
0.01
);
Context
cuContext
(
system
,
integrator1
,
cl
);
Context
cuContext
(
system
,
integrator1
,
platform
);
Context
referenceContext
(
system
,
integrator2
,
reference
);
cuContext
.
setPositions
(
positions
);
referenceContext
.
setPositions
(
positions
);
...
...
@@ -761,7 +753,6 @@ void testChangingParameters() {
}
void
testParallelComputation
(
bool
useCutoff
)
{
CudaPlatform
platform
;
System
system
;
const
int
numParticles
=
200
;
for
(
int
i
=
0
;
i
<
numParticles
;
i
++
)
...
...
@@ -820,8 +811,10 @@ void testParallelComputation(bool useCutoff) {
ASSERT_EQUAL_VEC
(
state1
.
getForces
()[
i
],
state2
.
getForces
()[
i
],
1e-5
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testCoulomb
();
testLJ
();
testExclusionsAnd14
();
...
...
platforms/cuda/tests/TestCudaPeriodicTorsionForce.cpp
View file @
3c8adf0c
...
...
@@ -46,10 +46,11 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
const
double
TOL
=
1e-5
;
void
testPeriodicTorsions
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -93,7 +94,6 @@ void testPeriodicTorsions() {
}
void
testParallelComputation
()
{
CudaPlatform
platform
;
System
system
;
const
int
numParticles
=
200
;
for
(
int
i
=
0
;
i
<
numParticles
;
i
++
)
...
...
@@ -121,8 +121,10 @@ void testParallelComputation() {
ASSERT_EQUAL_VEC
(
state1
.
getForces
()[
i
],
state2
.
getForces
()[
i
],
1e-5
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testPeriodicTorsions
();
testParallelComputation
();
}
...
...
platforms/cuda/tests/TestCudaRBTorsionForce.cpp
View file @
3c8adf0c
...
...
@@ -46,10 +46,11 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
const
double
TOL
=
1e-5
;
void
testRBTorsions
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -112,7 +113,6 @@ void testRBTorsions() {
}
void
testParallelComputation
()
{
CudaPlatform
platform
;
System
system
;
const
int
numParticles
=
200
;
for
(
int
i
=
0
;
i
<
numParticles
;
i
++
)
...
...
@@ -140,8 +140,10 @@ void testParallelComputation() {
ASSERT_EQUAL_VEC
(
state1
.
getForces
()[
i
],
state2
.
getForces
()[
i
],
1e-5
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testRBTorsions
();
testParallelComputation
();
}
...
...
platforms/cuda/tests/TestCudaRandom.cpp
View file @
3c8adf0c
...
...
@@ -47,13 +47,14 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
void
testGaussian
()
{
int
numAtoms
=
5000
;
System
system
;
for
(
int
i
=
0
;
i
<
numAtoms
;
i
++
)
system
.
addParticle
(
1.0
);
CudaPlatform
platform
;
CudaPlatform
::
PlatformData
platformData
(
system
,
""
,
"true"
,
"single"
,
CudaPlatform
::
PlatformData
platformData
(
system
,
""
,
"true"
,
platform
.
getPropertyDefaultValue
(
"CudaPrecision"
),
platform
.
getPropertyDefaultValue
(
CudaPlatform
::
CudaCompiler
()),
platform
.
getPropertyDefaultValue
(
CudaPlatform
::
CudaTempDirectory
()));
CudaContext
&
context
=
*
platformData
.
contexts
[
0
];
context
.
initialize
();
...
...
@@ -93,7 +94,6 @@ void testRandomVelocities() {
const
int
numParticles
=
10000
;
const
double
temperture
=
100.0
;
CudaPlatform
platform
;
System
system
;
VerletIntegrator
integrator
(
0.01
);
for
(
int
i
=
0
;
i
<
numParticles
;
++
i
)
...
...
@@ -131,8 +131,10 @@ void testRandomVelocities() {
ASSERT_USUALLY_EQUAL_TOL
(
expected
,
ke
,
4
/
sqrt
(
numParticles
));
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testGaussian
();
testRandomVelocities
();
}
...
...
platforms/cuda/tests/TestCudaSettle.cpp
View file @
3c8adf0c
...
...
@@ -47,12 +47,13 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
void
testConstraints
()
{
const
int
numMolecules
=
10
;
const
int
numParticles
=
numMolecules
*
3
;
const
int
numConstraints
=
numMolecules
*
3
;
const
double
temp
=
100.0
;
CudaPlatform
platform
;
System
system
;
LangevinIntegrator
integrator
(
temp
,
2.0
,
0.001
);
integrator
.
setConstraintTolerance
(
1e-5
);
...
...
@@ -103,8 +104,10 @@ void testConstraints() {
}
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testConstraints
();
}
catch
(
const
exception
&
e
)
{
...
...
platforms/cuda/tests/TestCudaSort.cpp
View file @
3c8adf0c
...
...
@@ -46,6 +46,8 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
class
SortTrait
:
public
CudaSort
::
SortTrait
{
int
getDataSize
()
const
{
return
4
;}
int
getKeySize
()
const
{
return
4
;}
...
...
@@ -62,8 +64,7 @@ void verifySorting(vector<float> array) {
System
system
;
system
.
addParticle
(
0.0
);
CudaPlatform
platform
;
CudaPlatform
::
PlatformData
platformData
(
system
,
""
,
"true"
,
"single"
,
CudaPlatform
::
PlatformData
platformData
(
system
,
""
,
"true"
,
platform
.
getPropertyDefaultValue
(
"CudaPrecision"
),
platform
.
getPropertyDefaultValue
(
CudaPlatform
::
CudaCompiler
()),
platform
.
getPropertyDefaultValue
(
CudaPlatform
::
CudaTempDirectory
()));
CudaContext
&
context
=
*
platformData
.
contexts
[
0
];
context
.
initialize
();
...
...
@@ -108,8 +109,10 @@ void testLogValues()
verifySorting
(
array
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testUniformValues
();
testLogValues
();
}
...
...
platforms/cuda/tests/TestCudaVariableLangevinIntegrator.cpp
View file @
3c8adf0c
...
...
@@ -48,10 +48,11 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
const
double
TOL
=
1e-5
;
void
testSingleBond
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
2.0
);
system
.
addParticle
(
2.0
);
...
...
@@ -97,7 +98,6 @@ void testSingleBond() {
void
testTemperature
()
{
const
int
numParticles
=
8
;
const
double
temp
=
100.0
;
CudaPlatform
platform
;
System
system
;
VariableLangevinIntegrator
integrator
(
temp
,
2.0
,
1e-4
);
NonbondedForce
*
forceField
=
new
NonbondedForce
();
...
...
@@ -132,7 +132,6 @@ void testTemperature() {
void
testConstraints
()
{
const
int
numParticles
=
8
;
const
double
temp
=
100.0
;
CudaPlatform
platform
;
System
system
;
VariableLangevinIntegrator
integrator
(
temp
,
2.0
,
1e-5
);
integrator
.
setConstraintTolerance
(
1e-5
);
...
...
@@ -175,7 +174,6 @@ void testConstraints() {
void
testRandomSeed
()
{
const
int
numParticles
=
8
;
const
double
temp
=
100.0
;
CudaPlatform
platform
;
System
system
;
VariableLangevinIntegrator
integrator
(
temp
,
2.0
,
1e-5
);
NonbondedForce
*
forceField
=
new
NonbondedForce
();
...
...
@@ -230,8 +228,10 @@ void testRandomSeed() {
}
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testSingleBond
();
testTemperature
();
testConstraints
();
...
...
platforms/cuda/tests/TestCudaVariableVerletIntegrator.cpp
View file @
3c8adf0c
...
...
@@ -48,10 +48,11 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
const
double
TOL
=
1e-5
;
void
testSingleBond
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
2.0
);
system
.
addParticle
(
2.0
);
...
...
@@ -89,7 +90,6 @@ void testConstraints() {
const
int
numParticles
=
8
;
const
int
numConstraints
=
5
;
const
double
temp
=
100.0
;
CudaPlatform
platform
;
System
system
;
VariableVerletIntegrator
integrator
(
1e-5
);
integrator
.
setConstraintTolerance
(
1e-5
);
...
...
@@ -150,8 +150,6 @@ void testConstraints() {
void
testConstrainedClusters
()
{
const
int
numParticles
=
7
;
const
double
temp
=
500.0
;
CudaPlatform
platform
;
System
system
;
VariableVerletIntegrator
integrator
(
1e-5
);
integrator
.
setConstraintTolerance
(
1e-5
);
...
...
@@ -213,8 +211,10 @@ void testConstrainedClusters() {
ASSERT
(
context
.
getState
(
State
::
Positions
).
getTime
()
>
0.1
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testSingleBond
();
testConstraints
();
testConstrainedClusters
();
...
...
platforms/cuda/tests/TestCudaVerletIntegrator.cpp
View file @
3c8adf0c
...
...
@@ -48,10 +48,11 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
const
double
TOL
=
1e-5
;
void
testSingleBond
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
2.0
);
system
.
addParticle
(
2.0
);
...
...
@@ -90,7 +91,6 @@ void testConstraints() {
const
int
numParticles
=
8
;
const
int
numConstraints
=
5
;
const
double
temp
=
100.0
;
CudaPlatform
platform
;
System
system
;
VerletIntegrator
integrator
(
0.001
);
integrator
.
setConstraintTolerance
(
1e-5
);
...
...
@@ -143,8 +143,6 @@ void testConstraints() {
void
testConstrainedClusters
()
{
const
int
numParticles
=
7
;
const
double
temp
=
500.0
;
CudaPlatform
platform
;
System
system
;
VerletIntegrator
integrator
(
0.001
);
integrator
.
setConstraintTolerance
(
1e-5
);
...
...
@@ -205,8 +203,10 @@ void testConstrainedClusters() {
}
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testSingleBond
();
testConstraints
();
testConstrainedClusters
();
...
...
platforms/cuda/tests/TestCudaVirtualSites.cpp
View file @
3c8adf0c
...
...
@@ -50,11 +50,12 @@
using
namespace
OpenMM
;
using
namespace
std
;
CudaPlatform
platform
;
/**
* Check that massless particles are handled correctly.
*/
void
testMasslessParticle
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
0.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -91,7 +92,6 @@ void testMasslessParticle() {
* Test a TwoParticleAverageSite virtual site.
*/
void
testTwoParticleAverage
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -128,7 +128,6 @@ void testTwoParticleAverage() {
* Test a ThreeParticleAverageSite virtual site.
*/
void
testThreeParticleAverage
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -170,7 +169,6 @@ void testThreeParticleAverage() {
* Test an OutOfPlaneSite virtual site.
*/
void
testOutOfPlane
()
{
CudaPlatform
platform
;
System
system
;
system
.
addParticle
(
1.0
);
system
.
addParticle
(
1.0
);
...
...
@@ -220,7 +218,6 @@ void testOutOfPlane() {
* when using virtual sites.
*/
void
testConservationLaws
()
{
CudaPlatform
platform
;
System
system
;
NonbondedForce
*
forceField
=
new
NonbondedForce
();
system
.
addForce
(
forceField
);
...
...
@@ -329,7 +326,6 @@ void testConservationLaws() {
void
testReordering
()
{
const
double
cutoff
=
2.0
;
const
double
boxSize
=
20.0
;
CudaPlatform
platform
;
System
system
;
NonbondedForce
*
nonbonded
=
new
NonbondedForce
();
system
.
addForce
(
nonbonded
);
...
...
@@ -430,8 +426,10 @@ void testReordering() {
}
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"CudaPrecision"
,
string
(
argv
[
1
]));
testMasslessParticle
();
testTwoParticleAverage
();
testThreeParticleAverage
();
...
...
platforms/opencl/tests/CMakeLists.txt
View file @
3c8adf0c
...
...
@@ -7,6 +7,8 @@ ENABLE_TESTING()
# INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/../FindOpenCL.cmake)
INCLUDE_DIRECTORIES
(
${
OPENCL_INCLUDE_DIR
}
)
SET
(
OPENMM_BUILD_OPENCL_DOUBLE_PRECISION_TESTS TRUE CACHE BOOL
"Whether to build double precision versions of OpenCL test cases"
)
SET
(
INCLUDE_SERIALIZATION FALSE
)
#SET( INCLUDE_SERIALIZATION TRUE )
...
...
@@ -53,7 +55,11 @@ FOREACH(TEST_PROG ${TEST_PROGS})
ENDIF
(
INCLUDE_SERIALIZATION
)
ENDIF
(
${
TEST_ROOT
}
STREQUAL
"TestOpenCLGBSAOBCForce2"
)
ADD_TEST
(
${
TEST_ROOT
}
${
EXECUTABLE_OUTPUT_PATH
}
/
${
TEST_ROOT
}
)
ADD_TEST
(
${
TEST_ROOT
}
Single
${
EXECUTABLE_OUTPUT_PATH
}
/
${
TEST_ROOT
}
single
)
IF
(
OPENMM_BUILD_OPENCL_DOUBLE_PRECISION_TESTS
)
ADD_TEST
(
${
TEST_ROOT
}
Mixed
${
EXECUTABLE_OUTPUT_PATH
}
/
${
TEST_ROOT
}
mixed
)
ADD_TEST
(
${
TEST_ROOT
}
Double
${
EXECUTABLE_OUTPUT_PATH
}
/
${
TEST_ROOT
}
double
)
ENDIF
(
OPENMM_BUILD_OPENCL_DOUBLE_PRECISION_TESTS
)
# Link with static library
# SET(TEST_STATIC ${TEST_ROOT}Static)
...
...
platforms/opencl/tests/TestOpenCLAndersenThermostat.cpp
View file @
3c8adf0c
...
...
@@ -48,12 +48,13 @@
using
namespace
OpenMM
;
using
namespace
std
;
OpenCLPlatform
platform
;
void
testTemperature
()
{
const
int
numParticles
=
8
;
const
double
temp
=
100.0
;
const
double
collisionFreq
=
10.0
;
const
int
numSteps
=
10000
;
OpenCLPlatform
platform
;
System
system
;
VerletIntegrator
integrator
(
0.005
);
NonbondedForce
*
forceField
=
new
NonbondedForce
();
...
...
@@ -92,7 +93,6 @@ void testConstraints() {
const
double
temp
=
100.0
;
const
double
collisionFreq
=
10.0
;
const
int
numSteps
=
10000
;
OpenCLPlatform
platform
;
System
system
;
VerletIntegrator
integrator
(
0.005
);
NonbondedForce
*
forceField
=
new
NonbondedForce
();
...
...
@@ -144,7 +144,6 @@ void testRandomSeed() {
const
int
numParticles
=
8
;
const
double
temp
=
100.0
;
const
double
collisionFreq
=
10.0
;
OpenCLPlatform
platform
;
System
system
;
VerletIntegrator
integrator
(
0.01
);
NonbondedForce
*
forceField
=
new
NonbondedForce
();
...
...
@@ -201,8 +200,10 @@ void testRandomSeed() {
}
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"OpenCLPrecision"
,
string
(
argv
[
1
]));
testTemperature
();
testConstraints
();
testRandomSeed
();
...
...
platforms/opencl/tests/TestOpenCLBrownianIntegrator.cpp
View file @
3c8adf0c
...
...
@@ -51,10 +51,11 @@
using
namespace
OpenMM
;
using
namespace
std
;
OpenCLPlatform
platform
;
const
double
TOL
=
1e-5
;
void
testSingleBond
()
{
OpenCLPlatform
platform
;
System
system
;
system
.
addParticle
(
2.0
);
system
.
addParticle
(
2.0
);
...
...
@@ -91,7 +92,6 @@ void testTemperature() {
const
int
numParticles
=
8
;
const
int
numBonds
=
numParticles
-
1
;
const
double
temp
=
10.0
;
OpenCLPlatform
platform
;
System
system
;
BrownianIntegrator
integrator
(
temp
,
2.0
,
0.01
);
HarmonicBondForce
*
forceField
=
new
HarmonicBondForce
();
...
...
@@ -128,7 +128,6 @@ void testConstraints() {
const
int
numParticles
=
8
;
const
int
numConstraints
=
5
;
const
double
temp
=
20.0
;
OpenCLPlatform
platform
;
System
system
;
BrownianIntegrator
integrator
(
temp
,
2.0
,
0.001
);
integrator
.
setConstraintTolerance
(
1e-5
);
...
...
@@ -177,7 +176,6 @@ void testRandomSeed() {
const
int
numParticles
=
8
;
const
double
temp
=
100.0
;
const
double
collisionFreq
=
10.0
;
OpenCLPlatform
platform
;
System
system
;
BrownianIntegrator
integrator
(
temp
,
2.0
,
0.001
);
NonbondedForce
*
forceField
=
new
NonbondedForce
();
...
...
@@ -232,8 +230,10 @@ void testRandomSeed() {
}
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"OpenCLPrecision"
,
string
(
argv
[
1
]));
testSingleBond
();
testTemperature
();
testConstraints
();
...
...
platforms/opencl/tests/TestOpenCLCMAPTorsionForce.cpp
View file @
3c8adf0c
...
...
@@ -48,6 +48,8 @@
using
namespace
OpenMM
;
using
namespace
std
;
OpenCLPlatform
platform
;
const
double
TOL
=
1e-5
;
void
testCMAPTorsions
()
{
...
...
@@ -56,7 +58,6 @@ void testCMAPTorsions() {
// Create two systems: one with a pair of periodic torsions, and one with a CMAP torsion
// that approximates the same force.
OpenCLPlatform
platform
;
System
system1
;
for
(
int
i
=
0
;
i
<
5
;
i
++
)
system1
.
addParticle
(
1.0
);
...
...
@@ -104,8 +105,10 @@ void testCMAPTorsions() {
}
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"OpenCLPrecision"
,
string
(
argv
[
1
]));
testCMAPTorsions
();
}
catch
(
const
exception
&
e
)
{
...
...
platforms/opencl/tests/TestOpenCLCMMotionRemover.cpp
View file @
3c8adf0c
...
...
@@ -50,6 +50,8 @@
using
namespace
OpenMM
;
using
namespace
std
;
OpenCLPlatform
platform
;
Vec3
calcCM
(
const
vector
<
Vec3
>&
values
,
System
&
system
)
{
Vec3
cm
;
for
(
int
j
=
0
;
j
<
system
.
getNumParticles
();
++
j
)
{
...
...
@@ -62,7 +64,6 @@ Vec3 calcCM(const vector<Vec3>& values, System& system) {
void
testMotionRemoval
(
Integrator
&
integrator
)
{
const
int
numParticles
=
8
;
OpenCLPlatform
platform
;
System
system
;
HarmonicBondForce
*
bonds
=
new
HarmonicBondForce
();
bonds
->
addBond
(
2
,
3
,
2.0
,
0.5
);
...
...
@@ -103,8 +104,10 @@ void testMotionRemoval(Integrator& integrator) {
}
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"OpenCLPrecision"
,
string
(
argv
[
1
]));
LangevinIntegrator
langevin
(
0.0
,
1e-5
,
0.01
);
testMotionRemoval
(
langevin
);
VerletIntegrator
verlet
(
0.01
);
...
...
platforms/opencl/tests/TestOpenCLCheckpoints.cpp
View file @
3c8adf0c
...
...
@@ -48,6 +48,8 @@
using
namespace
OpenMM
;
using
namespace
std
;
OpenCLPlatform
platform
;
const
double
TOL
=
1e-5
;
void
compareStates
(
State
&
s1
,
State
&
s2
)
{
...
...
@@ -71,7 +73,6 @@ void testCheckpoint() {
const
int
numParticles
=
100
;
const
double
boxSize
=
5.0
;
const
double
temperature
=
200.0
;
OpenCLPlatform
platform
;
System
system
;
system
.
addForce
(
new
AndersenThermostat
(
0.0
,
100.0
));
NonbondedForce
*
nonbonded
=
new
NonbondedForce
();
...
...
@@ -158,8 +159,10 @@ void testCheckpoint() {
compareStates
(
s6
,
s8
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"OpenCLPrecision"
,
string
(
argv
[
1
]));
testCheckpoint
();
}
catch
(
const
exception
&
e
)
{
...
...
platforms/opencl/tests/TestOpenCLCustomAngleForce.cpp
View file @
3c8adf0c
...
...
@@ -49,9 +49,9 @@ using namespace std;
const
double
TOL
=
1e-5
;
void
testAngles
()
{
OpenCLPlatform
platform
;
OpenCLPlatform
platform
;
void
testAngles
()
{
// Create a system using a CustomAngleForce.
System
customSystem
;
...
...
@@ -134,7 +134,6 @@ void testAngles() {
}
void
testParallelComputation
()
{
OpenCLPlatform
platform
;
System
system
;
const
int
numParticles
=
200
;
for
(
int
i
=
0
;
i
<
numParticles
;
i
++
)
...
...
@@ -163,8 +162,10 @@ void testParallelComputation() {
ASSERT_EQUAL_VEC
(
state1
.
getForces
()[
i
],
state2
.
getForces
()[
i
],
1e-5
);
}
int
main
()
{
int
main
(
int
argc
,
char
*
argv
[]
)
{
try
{
if
(
argc
>
1
)
platform
.
setPropertyDefaultValue
(
"OpenCLPrecision"
,
string
(
argv
[
1
]));
testAngles
();
testParallelComputation
();
}
...
...
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