Merge pull request #1 from peastman/ljpme

Cleanup to LJ PME code

Merge pull request #1 from peastman/ljpme
Cleanup to LJ PME code
3b6925ae · Andy Simmonett · GitHub · 5a8a8aa9 · f7a102fb · 3b6925ae
Commit 3b6925ae authored Jan 26, 2017 by Andy Simmonett Committed by GitHub Jan 26, 2017
20 changed files
--- a/platforms/reference/include/ReferenceVariableStochasticDynamics.h
+++ b/platforms/reference/include/ReferenceVariableStochasticDynamics.h
--- a/platforms/reference/src/ReferenceKernels.cpp
+++ b/platforms/reference/src/ReferenceKernels.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferencePME.cpp
+++ b/platforms/reference/src/SimTKReference/ReferencePME.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceVariableStochasticDynamics.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceVariableStochasticDynamics.cpp
--- a/platforms/reference/tests/TestReferenceMonteCarloMembraneBarostat.cpp
+++ b/platforms/reference/tests/TestReferenceMonteCarloMembraneBarostat.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaAngleForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaAngleForceImpl.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaBondForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaBondForceImpl.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaPiTorsionForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaPiTorsionForceImpl.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaStretchBendForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaStretchBendForceImpl.cpp
--- a/plugins/amoeba/platforms/cuda/CMakeLists.txt
+++ b/plugins/amoeba/platforms/cuda/CMakeLists.txt
--- a/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernelFactory.cpp
+++ b/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernelFactory.cpp
--- a/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp
+++ b/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp
--- a/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.h
+++ b/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.h