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tsoc
openmm
Commits
3a8941b5
Commit
3a8941b5
authored
Apr 03, 2019
by
John Chodera
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Fix unicode error in sphinx compilation
parent
a4dec7b9
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docs-source/usersguide/theory.rst
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docs-source/usersguide/theory.rst
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3a8941b5
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@@ -851,7 +851,7 @@ by the user. That is, the interaction energy of each angle is given by
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@@ -851,7 +851,7 @@ by the user. That is, the interaction energy of each angle is given by
where :math:`f(\theta)` is a user defined mathematical expression. The angle
where :math:`f(\theta)` is a user defined mathematical expression. The angle
:math:`\theta` is guaranteed to be in the range
[-π, π]
. Like PeriodicTorsionForce, it
:math:`\theta` is guaranteed to be in the range
:math:`[-\pi, +\pi]`\
. Like PeriodicTorsionForce, it
is defined to be zero when the first and last particles are on the same side of
is defined to be zero when the first and last particles are on the same side of
the bond formed by the middle two particles (the *cis* configuration).
the bond formed by the middle two particles (the *cis* configuration).
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@@ -973,7 +973,7 @@ of four particles. That is, the interaction energy of each bond is given by
...
@@ -973,7 +973,7 @@ of four particles. That is, the interaction energy of each bond is given by
where *f*\ (\ *...*\ ) is a user defined mathematical expression. It may
where *f*\ (\ *...*\ ) is a user defined mathematical expression. It may
depend on an arbitrary set of positions {\ :math:`x_i`\ }, distances {\ :math:`r_i`\ },
depend on an arbitrary set of positions {\ :math:`x_i`\ }, distances {\ :math:`r_i`\ },
angles {\ :math:`\theta_i`\ }, and dihedral angles {\ :math:`\phi_i`\ }
angles {\ :math:`\theta_i`\ }, and dihedral angles {\ :math:`\phi_i`\ }
guaranteed to be in the range
[-π, π].
guaranteed to be in the range
:math:`[-\pi, +\pi]`\ .
Each distance, angle, or dihedral is defined by specifying a sequence of
Each distance, angle, or dihedral is defined by specifying a sequence of
particles chosen from among the particles that make up the bond. A distance
particles chosen from among the particles that make up the bond. A distance
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