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tsoc
openmm
Commits
390b73ff
Commit
390b73ff
authored
Jan 14, 2010
by
Mark Friedrichs
Browse files
Added computation of average relative delta
parent
347c5d89
Changes
1
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1 changed file
with
33 additions
and
13 deletions
+33
-13
platforms/cuda/tests/TstCudaUsingParameterFile.cpp
platforms/cuda/tests/TstCudaUsingParameterFile.cpp
+33
-13
No files found.
platforms/cuda/tests/TstCudaUsingParameterFile.cpp
View file @
390b73ff
...
...
@@ -4421,9 +4421,10 @@ static int checkEnergyForceConsistent( Context& context, MapStringString& inputA
--------------------------------------------------------------------------------------- */
int
compareForces
(
const
std
::
vector
<
Vec3
>&
forceArray1
,
const
std
::
string
&
f1Name
,
std
::
vector
<
double
>&
forceArray1Sum
,
std
::
vector
<
double
>&
forceArray1Stats
,
void
compareForces
(
const
std
::
vector
<
Vec3
>&
forceArray1
,
const
std
::
string
&
f1Name
,
std
::
vector
<
double
>&
forceArray1Sum
,
std
::
vector
<
double
>&
forceArray1Stats
,
const
std
::
vector
<
Vec3
>&
forceArray2
,
const
std
::
string
&
f2Name
,
std
::
vector
<
double
>&
forceArray2Sum
,
std
::
vector
<
double
>&
forceArray2Stats
,
double
*
averageDelta
,
double
*
maxDelta
,
int
*
maxDeltaIndex
,
double
*
maxRelativeDelta
,
int
*
maxRelativeDeltaIndex
,
double
*
maxDot
,
double
forceTolerance
,
FILE
*
inputLog
){
double
*
averageDelta
,
double
*
averageRelativeDelta
,
double
*
maxDelta
,
int
*
maxDeltaIndex
,
double
*
maxRelativeDelta
,
int
*
maxRelativeDeltaIndex
,
double
*
maxDot
,
double
forceTolerance
,
FILE
*
inputLog
){
// ---------------------------------------------------------------------------------------
...
...
@@ -4450,6 +4451,8 @@ int compareForces( const std::vector<Vec3>& forceArray1, const std::string& f1Na
*
maxDeltaIndex
=
-
1
;
*
maxRelativeDeltaIndex
=
-
1
;
*
averageDelta
=
0.0
;
*
averageRelativeDelta
=
0.0
;
double
averageRelativeDeltaCount
=
0.0
;
std
::
vector
<
double
>
forceArray1Norms
;
std
::
vector
<
double
>
forceArray2Norms
;
...
...
@@ -4485,7 +4488,15 @@ int compareForces( const std::vector<Vec3>& forceArray1, const std::string& f1Na
dotProduct
/=
(
normF1
*
normF2
);
dotProduct
=
1.0
-
dotProduct
;
double
relativeDelta
=
(
delta
*
2.0
)
/
(
normF1
+
normF2
);
double
relativeDelta
;
if
(
normF1
>
0.0
||
normF2
>
0.0
){
relativeDelta
=
(
delta
*
2.0
)
/
(
normF1
+
normF2
);
*
averageRelativeDelta
+=
relativeDelta
;
averageRelativeDeltaCount
+=
1.0
;
}
else
{
relativeDelta
=
0.0
;
}
int
print
=
0
;
if
(
delta
>
forceTolerance
){
...
...
@@ -4520,11 +4531,14 @@ int compareForces( const std::vector<Vec3>& forceArray1, const std::string& f1Na
if
(
forceArray2
.
size
()
){
*
averageDelta
/=
(
double
)(
forceArray2
.
size
()
);
}
if
(
averageRelativeDeltaCount
){
*
averageRelativeDelta
/=
averageRelativeDeltaCount
;
}
findStatsForDouble
(
forceArray1Norms
,
forceArray1Stats
);
findStatsForDouble
(
forceArray2Norms
,
forceArray2Stats
);
return
0
;
return
;
}
/**---------------------------------------------------------------------------------------
...
...
@@ -4538,7 +4552,7 @@ int compareForces( const std::vector<Vec3>& forceArray1, const std::string& f1Na
*
--------------------------------------------------------------------------------------- */
static
int
checkForcesDuringSimulation
(
int
currentStep
,
Context
&
cudaContext
,
Context
&
referenceContext
,
FILE
*
log
)
{
static
void
checkForcesDuringSimulation
(
int
currentStep
,
Context
&
cudaContext
,
Context
&
referenceContext
,
FILE
*
log
)
{
// ---------------------------------------------------------------------------------------
...
...
@@ -4576,6 +4590,7 @@ static int checkForcesDuringSimulation( int currentStep, Context& cudaContext, C
double
maxDotPrmCud
=
-
1.0e+30
;
double
forceTolerance
=
1.0e-01
;
double
averageDelta
;
double
averageRelativeDelta
;
int
maxDeltaIndex
;
int
maxRelativeDeltaRefCudIndex
;
...
...
@@ -4588,7 +4603,7 @@ static int checkForcesDuringSimulation( int currentStep, Context& cudaContext, C
compareForces
(
referenceForces
,
"fRef"
,
forceArray1Sum
,
referenceForceStats
,
cudaForces
,
"fCud"
,
forceArray2Sum
,
cudaForceStats
,
&
averageDelta
,
&
maxDeltaRefCud
,
&
maxDeltaIndex
,
&
maxRelativeDeltaRefCud
,
&
averageDelta
,
&
averageRelativeDelta
,
&
maxDeltaRefCud
,
&
maxDeltaIndex
,
&
maxRelativeDeltaRefCud
,
&
maxRelativeDeltaRefCudIndex
,
&
maxDotRefCud
,
forceTolerance
,
log
);
(
void
)
fprintf
(
log
,
"MaxDelta=%13.7e at %d MaxRelativeDelta=%13.7e at %d maxDotRefCud=%14.6e averageDelta=%13.7e
\n
"
,
...
...
@@ -4603,7 +4618,7 @@ static int checkForcesDuringSimulation( int currentStep, Context& cudaContext, C
(
void
)
fflush
(
log
);
return
0
;
return
;
}
...
...
@@ -4823,21 +4838,25 @@ static int checkEnergyConservation( Context& context, MapStringString& inputArg
(
void
)
fflush
(
log
);
}
Context
*
simulationContext
=
equilibrationContext
;
Integrator
*
simulationIntegrator
=
integrator
;
// get simulation integrator & context
/*
Integrator* simulationIntegrator = _getIntegrator( simulationIntegratorName, simulationTimeStep,
simulationFriction, simulationTemperature,
simulationShakeTolerance, simulationErrorTolerance,
simulationSeed, log );
*/
if
(
log
){
_printIntegratorInfo
(
simulationIntegrator
,
log
);
}
//delete equilibrationContext;
Context
*
simulationContext
=
_getContext
(
&
system
,
equilibrationContext
,
simulationIntegrator
,
"CudaPlatform"
,
"SimulationContext"
,
deviceId
,
log
);
//
Context* simulationContext = _getContext( &system, equilibrationContext, simulationIntegrator, "CudaPlatform", "SimulationContext", deviceId, log );
//Context* simulationContext = _getContext( &system, equilibrationContext, simulationIntegrator, "ReferencePlatform", "SimulationContext", deviceId, log );
//Context* simulationContext = equilibrationContext;
//Context* simulationContext = _getContext( &system, &context, simulationIntegrator, "CudaPlatform", "SimulationContext", deviceId, log );
//Context* simulationContext = _getContext( &system, &context, simulationIntegrator, "ReferencePlatform", "SimulationContext", deviceId, log );
//Context* simulationContext = _getContext( &system, &context, simulationIntegrator, "ReferencePlatform", "SimulationContext", deviceId, log );
...
...
@@ -5320,6 +5339,7 @@ void testReferenceCudaForces( std::string parameterFileName, MapStringInt& force
double
maxRelativeDeltaPrmCud
=
-
1.0e+30
;
double
maxDotPrmCud
=
-
1.0e+30
;
double
averageDelta
;
double
averageRelativeDelta
;
int
maxDeltaIndex
;
int
maxRelativeDeltaRefCudIndex
;
...
...
@@ -5334,7 +5354,7 @@ void testReferenceCudaForces( std::string parameterFileName, MapStringInt& force
compareForces
(
referenceForces
,
"fRef"
,
forceArray1Sum
,
referenceForceStats
,
cudaForces
,
"fCud"
,
forceArray2Sum
,
cudaForceStats
,
&
averageDelta
,
&
maxDeltaRefCud
,
&
maxDeltaIndex
,
&
maxRelativeDeltaRefCud
,
&
averageDelta
,
&
averageRelativeDelta
,
&
maxDeltaRefCud
,
&
maxDeltaIndex
,
&
maxRelativeDeltaRefCud
,
&
maxRelativeDeltaRefCudIndex
,
&
maxDotRefCud
,
forceTolerance
,
log
);
(
void
)
fflush
(
log
);
...
...
@@ -5368,8 +5388,8 @@ void testReferenceCudaForces( std::string parameterFileName, MapStringInt& force
if
(
forceString
.
size
()
<
1
){
forceString
=
"NA"
;
}
(
void
)
fprintf
(
summaryFile
,
"Force %s
\n
Atoms %u
\n
MaxDelta %14.7e
\n
MaxRelDelta %14.7e
\n
MaxDot %14.7e
\n
AverageDelta %14.7e
\n
"
,
forceString
.
c_str
(),
referenceForces
.
size
(),
maxDeltaRefCud
,
maxRelativeDeltaRefCud
,
maxDotRefCud
,
averageDelta
);
(
void
)
fprintf
(
summaryFile
,
"Force %s
\n
Atoms %u
\n
MaxDelta %14.7e
\n
MaxRelDelta %14.7e
\n
MaxDot %14.7e
\n
AverageDelta
%14.7e
\n
AverageRelativeDelta
%14.7e
\n
"
,
forceString
.
c_str
(),
referenceForces
.
size
(),
maxDeltaRefCud
,
maxRelativeDeltaRefCud
,
maxDotRefCud
,
averageDelta
,
averageRelativeDelta
);
double
sum
=
(
fabs
(
forceArray1Sum
[
0
]
)
+
fabs
(
forceArray1Sum
[
1
]
)
+
fabs
(
forceArray1Sum
[
2
])
)
*
0.33333
;
(
void
)
fprintf
(
summaryFile
,
"SumRef %14.7e
\n
"
,
sum
);
...
...
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