Major cleanup of the AMOEBA API

1db349e5 · Peter Eastman · a919f305 · 1db349e5 · a919f305 · a919f305
Commit 1db349e5 authored Sep 27, 2012 by Peter Eastman
20 changed files
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceVdwForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceVdwForce.h
--- a/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaTorsionForce.cpp
+++ b/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaTorsionForce.cpp
--- a/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaUreyBradleyForce.cpp
+++ b/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaUreyBradleyForce.cpp
--- a/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaVdwForce.cpp
+++ b/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaVdwForce.cpp
--- a/plugins/amoeba/serialization/include/openmm/serialization/AmoebaGeneralizedKirkwoodForceProxy.h
+++ b/plugins/amoeba/serialization/include/openmm/serialization/AmoebaGeneralizedKirkwoodForceProxy.h
--- a/plugins/amoeba/serialization/include/openmm/serialization/AmoebaMultipoleForceProxy.h
+++ b/plugins/amoeba/serialization/include/openmm/serialization/AmoebaMultipoleForceProxy.h
--- a/plugins/amoeba/serialization/include/openmm/serialization/AmoebaStretchBendForceProxy.h
+++ b/plugins/amoeba/serialization/include/openmm/serialization/AmoebaStretchBendForceProxy.h
--- a/plugins/amoeba/serialization/include/openmm/serialization/AmoebaTorsionForceProxy.h
+++ b/plugins/amoeba/serialization/include/openmm/serialization/AmoebaTorsionForceProxy.h
--- a/plugins/amoeba/serialization/include/openmm/serialization/AmoebaUreyBradleyForceProxy.h
+++ b/plugins/amoeba/serialization/include/openmm/serialization/AmoebaUreyBradleyForceProxy.h
--- a/plugins/amoeba/serialization/include/openmm/serialization/AmoebaVdwForceProxy.h
+++ b/plugins/amoeba/serialization/include/openmm/serialization/AmoebaVdwForceProxy.h
--- a/plugins/amoeba/serialization/include/openmm/serialization/AmoebaWcaDispersionForceProxy.h
+++ b/plugins/amoeba/serialization/include/openmm/serialization/AmoebaWcaDispersionForceProxy.h
--- a/plugins/amoeba/serialization/src/AmoebaMultipoleForceProxy.cpp
+++ b/plugins/amoeba/serialization/src/AmoebaMultipoleForceProxy.cpp
--- a/plugins/amoeba/serialization/src/AmoebaSerializationProxyRegistration.cpp
+++ b/plugins/amoeba/serialization/src/AmoebaSerializationProxyRegistration.cpp
--- a/plugins/amoeba/serialization/src/AmoebaTorsionForceProxy.cpp
+++ b/plugins/amoeba/serialization/src/AmoebaTorsionForceProxy.cpp
--- a/plugins/amoeba/serialization/src/AmoebaUreyBradleyForceProxy.cpp
+++ b/plugins/amoeba/serialization/src/AmoebaUreyBradleyForceProxy.cpp
--- a/plugins/amoeba/serialization/src/AmoebaVdwForceProxy.cpp
+++ b/plugins/amoeba/serialization/src/AmoebaVdwForceProxy.cpp
--- a/plugins/amoeba/serialization/tests/TestSerializeAmoebaTorsionForce.cpp
+++ b/plugins/amoeba/serialization/tests/TestSerializeAmoebaTorsionForce.cpp
--- a/plugins/amoeba/serialization/tests/TestSerializeAmoebaUreyBradleyForce.cpp
+++ b/plugins/amoeba/serialization/tests/TestSerializeAmoebaUreyBradleyForce.cpp
--- a/plugins/amoeba/serialization/tests/TestSerializeAmoebaVdwForce.cpp
+++ b/plugins/amoeba/serialization/tests/TestSerializeAmoebaVdwForce.cpp
--- a/wrappers/python/simtk/openmm/app/forcefield.py
+++ b/wrappers/python/simtk/openmm/app/forcefield.py