Lots of updates to documentation based on changes in 4.1.

1d043ff5 · Peter Eastman · 084b5c97 · 1d043ff5 · 1d043ff5 · 1d043ff5
Commit 1d043ff5 authored Apr 03, 2012 by Peter Eastman
20 changed files
--- a/docs/OpenMMApplicationGuide.doc
+++ b/docs/OpenMMApplicationGuide.doc
--- a/docs/UsersGuide/OpenMMUsersGuide.doc
+++ b/docs/UsersGuide/OpenMMUsersGuide.doc
--- a/docs/UsersGuide/References.Data/Trash/Trash.Data/rdb/csort.MYI
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--- a/docs/UsersGuide/References.Data/Trash/Trash.Data/rdb/jterms.MYI
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--- a/docs/UsersGuide/References.Data/Trash/Trash.Data/rdb/pdf_index.MYI
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--- a/docs/UsersGuide/References.Data/Trash/Trash.Data/rdb/refs.MYI
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--- a/docs/UsersGuide/References.Data/Trash/Trash.Data/rdb/refs_ext.MYI
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--- a/docs/UsersGuide/References.Data/Trash/Trash.Data/rdb/terms.MYI
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--- a/docs/UsersGuide/References.Data/rdb/csort.MYD
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--- a/docs/UsersGuide/References.Data/rdb/csort.MYI
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--- a/docs/UsersGuide/References.Data/rdb/misc.MYD
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--- a/docs/UsersGuide/References.Data/rdb/misc.MYI
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--- a/docs/UsersGuide/References.Data/rdb/pdf_index.MYD
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--- a/docs/UsersGuide/References.Data/rdb/pdf_index.MYI
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--- a/docs/UsersGuide/References.Data/rdb/refs.MYD
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--- a/docs/UsersGuide/References.Data/rdb/refs.MYI
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--- a/docs/UsersGuide/References.Data/rdb/refs_ext.MYD
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--- a/docs/UsersGuide/References.Data/rdb/refs_ext.MYI
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--- a/docs/UsersGuide/References.Data/rdb/terms.MYD
+++ b/docs/UsersGuide/References.Data/rdb/terms.MYD
--- a/docs/UsersGuide/References.Data/rdb/terms.MYI
+++ b/docs/UsersGuide/References.Data/rdb/terms.MYI