Merge github.com:SimTk/openmm

19d2885a · Lee-Ping · 99ef4344 · 57a6768e · 19d2885a · 19d2885a
Commit 19d2885a authored Jan 23, 2014 by Lee-Ping
20 changed files
--- a/platforms/reference/include/ReferenceBondIxn.h
+++ b/platforms/reference/include/ReferenceBondIxn.h
--- a/platforms/reference/include/ReferenceBrownianDynamics.h
+++ b/platforms/reference/include/ReferenceBrownianDynamics.h
--- a/platforms/reference/include/ReferenceCCMAAlgorithm.h
+++ b/platforms/reference/include/ReferenceCCMAAlgorithm.h
--- a/platforms/reference/include/ReferenceConstraintAlgorithm.h
+++ b/platforms/reference/include/ReferenceConstraintAlgorithm.h
--- a/platforms/reference/include/ReferenceConstraints.h
+++ b/platforms/reference/include/ReferenceConstraints.h
--- a/platforms/reference/include/ReferenceCustomDynamics.h
+++ b/platforms/reference/include/ReferenceCustomDynamics.h
--- a/platforms/reference/include/ReferenceDynamics.h
+++ b/platforms/reference/include/ReferenceDynamics.h
--- a/platforms/reference/include/ReferenceKernelFactory.h
+++ b/platforms/reference/include/ReferenceKernelFactory.h
--- a/platforms/reference/include/ReferenceKernels.h
+++ b/platforms/reference/include/ReferenceKernels.h
--- a/platforms/reference/include/ReferenceLJCoulomb14.h
+++ b/platforms/reference/include/ReferenceLJCoulomb14.h
--- a/platforms/reference/include/ReferencePME.h
+++ b/platforms/reference/include/ReferencePME.h
--- a/platforms/reference/include/ReferencePlatform.h
+++ b/platforms/reference/include/ReferencePlatform.h
--- a/platforms/reference/include/ReferenceSETTLEAlgorithm.h
+++ b/platforms/reference/include/ReferenceSETTLEAlgorithm.h
--- a/platforms/reference/include/ReferenceStochasticDynamics.h
+++ b/platforms/reference/include/ReferenceStochasticDynamics.h
--- a/platforms/reference/include/ReferenceVariableStochasticDynamics.h
+++ b/platforms/reference/include/ReferenceVariableStochasticDynamics.h
--- a/platforms/reference/include/ReferenceVariableVerletDynamics.h
+++ b/platforms/reference/include/ReferenceVariableVerletDynamics.h
--- a/platforms/reference/include/ReferenceVerletDynamics.h
+++ b/platforms/reference/include/ReferenceVerletDynamics.h
--- a/platforms/reference/src/ReferenceKernels.cpp
+++ b/platforms/reference/src/ReferenceKernels.cpp
--- a/platforms/reference/src/ReferencePlatform.cpp
+++ b/platforms/reference/src/ReferencePlatform.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp