Merge pull request #827 from peastman/reference

Lots of cleanup to reference platform

Merge pull request #827 from peastman/reference
Lots of cleanup to reference platform
162d69a2 · peastman · 2379b982 · c44c956d · 162d69a2 · 162d69a2
Commit 162d69a2 authored Feb 20, 2015 by peastman
20 changed files
--- a/plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h
+++ b/plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h
--- a/plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h
+++ b/plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h
--- a/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h
+++ b/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h
--- a/plugins/amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h
+++ b/plugins/amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h
--- a/plugins/amoeba/openmmapi/include/openmm/internal/AmoebaMultipoleForceImpl.h
+++ b/plugins/amoeba/openmmapi/include/openmm/internal/AmoebaMultipoleForceImpl.h
--- a/plugins/amoeba/openmmapi/src/AmoebaAngleForce.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaAngleForce.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaBondForce.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaBondForce.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForce.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForce.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaMultipoleForce.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaMultipoleForce.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp
--- a/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp
+++ b/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp
--- a/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.cpp
+++ b/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.cpp
--- a/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.h
+++ b/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceAngleForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceAngleForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceAngleForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceAngleForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.cpp
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.h
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.h
--- a/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.cpp
+++ b/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.cpp