<Residues>
  <Residue abbreviation="ALA" loc="middle" type="protein" tinkerLookupName="Alanine" fullName="Alanine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB1" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="HB1" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="ARG" loc="middle" type="protein" tinkerLookupName="Arginine" fullName="Arginine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD" tinkerLookupName="CD" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="CZ" tinkerLookupName="CZ" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD3" tinkerLookupName="HD" bonds="1" />
  <Atom name="HE" tinkerLookupName="HE" bonds="1" />
  <Atom name="HG2" tinkerLookupName="HG" bonds="1" />
  <Atom name="HG3" tinkerLookupName="HG" bonds="1" />
  <Atom name="HH11" tinkerLookupName="HH" bonds="1" />
  <Atom name="HH12" tinkerLookupName="HH" bonds="1" />
  <Atom name="HH21" tinkerLookupName="HH" bonds="1" />
  <Atom name="HH22" tinkerLookupName="HH" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="NE" tinkerLookupName="NE" bonds="3" />
  <Atom name="NH1" tinkerLookupName="NH" bonds="3" />
  <Atom name="NH2" tinkerLookupName="NH" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD" to="HD3" />
  <Bond from="CD" to="CG" />
  <Bond from="CD" to="NE" />
  <Bond from="CD" to="HD2" />
  <Bond from="CG" to="HG2" />
  <Bond from="CG" to="HG3" />
  <Bond from="CZ" to="NH1" />
  <Bond from="CZ" to="NE" />
  <Bond from="CZ" to="NH2" />
  <Bond from="H" to="N" />
  <Bond from="HE" to="NE" />
  <Bond from="HH11" to="NH1" />
  <Bond from="HH12" to="NH1" />
  <Bond from="HH21" to="NH2" />
  <Bond from="HH22" to="NH2" />
  </Residue>
  <Residue abbreviation="ASN" loc="middle" type="protein" tinkerLookupName="Asparagine" fullName="Asparagine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD21" tinkerLookupName="HD2" bonds="1" />
  <Atom name="HD22" tinkerLookupName="HD2" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="ND2" tinkerLookupName="ND2" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OD1" tinkerLookupName="OD1" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CG" to="ND2" />
  <Bond from="CG" to="OD1" />
  <Bond from="H" to="N" />
  <Bond from="HD21" to="ND2" />
  <Bond from="HD22" to="ND2" />
  </Residue>
  <Residue abbreviation="ASP" loc="middle" type="protein" tinkerLookupName="Aspartic Acid" fullName="Aspartic Acid">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OD1" tinkerLookupName="OD" bonds="1" />
  <Atom name="OD2" tinkerLookupName="OD" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CG" to="OD2" />
  <Bond from="CG" to="OD1" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="ASH" loc="middle" type="protein" tinkerLookupName="Aspartic Acid (COOH)" fullName="Aspartic Acid">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD2" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OD1" tinkerLookupName="OD1" bonds="1" />
  <Atom name="OD2" tinkerLookupName="OD2" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CG" to="OD2" />
  <Bond from="CG" to="OD1" />
  <Bond from="H" to="N" />
  <Bond from="HD2" to="OD2" />
  </Residue>
  <Residue abbreviation="CYS" loc="middle" type="protein" tinkerLookupName="Cysteine (SH)" fullName="Cysteine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HG" tinkerLookupName="HG" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="SG" tinkerLookupName="SG" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="SG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="H" to="N" />
  <Bond from="HG" to="SG" />
  </Residue>
  <Residue abbreviation="CYD" loc="middle" type="protein" tinkerLookupName="Cysteine (S-)" fullName="Cysteine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="SG" tinkerLookupName="SG" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="SG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="CYX" loc="middle" type="protein" tinkerLookupName="Cystine (SS)" fullName="Cystine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="SG" tinkerLookupName="SG" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="SG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="GLN" loc="middle" type="protein" tinkerLookupName="Glutamine" fullName="Glutamine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD" tinkerLookupName="CD" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HE21" tinkerLookupName="HE2" bonds="1" />
  <Atom name="HE22" tinkerLookupName="HE2" bonds="1" />
  <Atom name="HG2" tinkerLookupName="HG" bonds="1" />
  <Atom name="HG3" tinkerLookupName="HG" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="NE2" tinkerLookupName="NE2" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OE1" tinkerLookupName="OE1" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD" to="NE2" />
  <Bond from="CD" to="OE1" />
  <Bond from="CD" to="CG" />
  <Bond from="CG" to="HG2" />
  <Bond from="CG" to="HG3" />
  <Bond from="H" to="N" />
  <Bond from="HE21" to="NE2" />
  <Bond from="HE22" to="NE2" />
  </Residue>
  <Residue abbreviation="GLU" loc="middle" type="protein" tinkerLookupName="Glutamic Acid" fullName="Glutamic Acid">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD" tinkerLookupName="CD" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HG2" tinkerLookupName="HG" bonds="1" />
  <Atom name="HG3" tinkerLookupName="HG" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OE1" tinkerLookupName="OE" bonds="1" />
  <Atom name="OE2" tinkerLookupName="OE" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD" to="OE2" />
  <Bond from="CD" to="OE1" />
  <Bond from="CD" to="CG" />
  <Bond from="CG" to="HG2" />
  <Bond from="CG" to="HG3" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="GLH" loc="middle" type="protein" tinkerLookupName="Glutamic Acid (COOH)" fullName="Glutamic Acid">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD" tinkerLookupName="CD" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE2" bonds="1" />
  <Atom name="HG2" tinkerLookupName="HG" bonds="1" />
  <Atom name="HG3" tinkerLookupName="HG" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OE1" tinkerLookupName="OE1" bonds="1" />
  <Atom name="OE2" tinkerLookupName="OE2" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD" to="OE2" />
  <Bond from="CD" to="OE1" />
  <Bond from="CD" to="CG" />
  <Bond from="CG" to="HG2" />
  <Bond from="CG" to="HG3" />
  <Bond from="H" to="N" />
  <Bond from="HE2" to="OE2" />
  </Residue>
  <Residue abbreviation="GLY" loc="middle" type="protein" tinkerLookupName="Glycine" fullName="Glycine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA2" tinkerLookupName="HA" bonds="1" />
  <Atom name="HA3" tinkerLookupName="HA" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="HA3" />
  <Bond from="CA" to="HA2" />
  <Bond from="CA" to="N" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="HIS" loc="middle" type="protein" tinkerLookupName="Histidine (+)" fullName="Histidine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD2" tinkerLookupName="CD2" bonds="3" />
  <Atom name="CE1" tinkerLookupName="CE1" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD1" tinkerLookupName="HD1" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD2" bonds="1" />
  <Atom name="HE1" tinkerLookupName="HE1" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE2" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="ND1" tinkerLookupName="ND1" bonds="3" />
  <Atom name="NE2" tinkerLookupName="NE2" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD2" to="CG" />
  <Bond from="CD2" to="NE2" />
  <Bond from="CD2" to="HD2" />
  <Bond from="CE1" to="ND1" />
  <Bond from="CE1" to="NE2" />
  <Bond from="CE1" to="HE1" />
  <Bond from="CG" to="ND1" />
  <Bond from="H" to="N" />
  <Bond from="HD1" to="ND1" />
  <Bond from="HD2" to="CD2" />
  <Bond from="HE2" to="NE2" />
  </Residue>
  <Residue abbreviation="HID" loc="middle" type="protein" tinkerLookupName="Histidine (HD)" fullName="Histidine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD2" tinkerLookupName="CD2" bonds="3" />
  <Atom name="CE1" tinkerLookupName="CE1" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD1" tinkerLookupName="HD1" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD2" bonds="1" />
  <Atom name="HE1" tinkerLookupName="HE1" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="ND1" tinkerLookupName="ND1" bonds="3" />
  <Atom name="NE2" tinkerLookupName="NE2" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD2" to="CG" />
  <Bond from="CD2" to="NE2" />
  <Bond from="CD2" to="HD2" />
  <Bond from="CE1" to="ND1" />
  <Bond from="CE1" to="NE2" />
  <Bond from="CE1" to="HE1" />
  <Bond from="CG" to="ND1" />
  <Bond from="H" to="N" />
  <Bond from="HD1" to="ND1" />
  </Residue>
  <Residue abbreviation="HIE" loc="middle" type="protein" tinkerLookupName="Histidine (HE)" fullName="Histidine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD2" tinkerLookupName="CD2" bonds="3" />
  <Atom name="CE1" tinkerLookupName="CE1" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD2" bonds="1" />
  <Atom name="HE1" tinkerLookupName="HE1" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE2" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="ND1" tinkerLookupName="ND1" bonds="3" />
  <Atom name="NE2" tinkerLookupName="NE2" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD2" to="CG" />
  <Bond from="CD2" to="NE2" />
  <Bond from="CD2" to="HD2" />
  <Bond from="CE1" to="ND1" />
  <Bond from="CE1" to="NE2" />
  <Bond from="CE1" to="HE1" />
  <Bond from="CG" to="ND1" />
  <Bond from="H" to="N" />
  <Bond from="HE2" to="NE2" />
  </Residue>
  <Residue abbreviation="HOH" loc="middle" type="AmoebaWater" tinkerLookupName="Water" fullName="Water">
  <Atom name="H1" tinkerLookupName="H" bonds="1" />
  <Atom name="H2" tinkerLookupName="H" bonds="1" />
  <Atom name="O" tinkerLookupName="O" bonds="2" />
  <Bond from="O" to="H1" />
  <Bond from="O" to="H2" />
  </Residue>
  <Residue abbreviation="ILE" loc="middle" type="protein" tinkerLookupName="Isoleucine" fullName="Isoleucine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD1" tinkerLookupName="CD" bonds="4" />
  <Atom name="CG1" tinkerLookupName="CG1" bonds="4" />
  <Atom name="CG2" tinkerLookupName="CG2" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD11" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD12" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD13" tinkerLookupName="HD" bonds="1" />
  <Atom name="HG12" tinkerLookupName="HG1" bonds="1" />
  <Atom name="HG13" tinkerLookupName="HG1" bonds="1" />
  <Atom name="HG21" tinkerLookupName="HG2" bonds="1" />
  <Atom name="HG22" tinkerLookupName="HG2" bonds="1" />
  <Atom name="HG23" tinkerLookupName="HG2" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG1" />
  <Bond from="CB" to="HB" />
  <Bond from="CB" to="CG2" />
  <Bond from="CD1" to="CG1" />
  <Bond from="CD1" to="HD12" />
  <Bond from="CD1" to="HD11" />
  <Bond from="CD1" to="HD13" />
  <Bond from="CG1" to="HG12" />
  <Bond from="CG1" to="HG13" />
  <Bond from="CG2" to="HG21" />
  <Bond from="CG2" to="HG23" />
  <Bond from="CG2" to="HG22" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="LEU" loc="middle" type="protein" tinkerLookupName="Leucine" fullName="Leucine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD1" tinkerLookupName="CD1" bonds="4" />
  <Atom name="CD2" tinkerLookupName="CD2" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD11" tinkerLookupName="HD1" bonds="1" />
  <Atom name="HD12" tinkerLookupName="HD1" bonds="1" />
  <Atom name="HD13" tinkerLookupName="HD1" bonds="1" />
  <Atom name="HD21" tinkerLookupName="HD2" bonds="1" />
  <Atom name="HD22" tinkerLookupName="HD2" bonds="1" />
  <Atom name="HD23" tinkerLookupName="HD2" bonds="1" />
  <Atom name="HG" tinkerLookupName="HG" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD1" to="HD13" />
  <Bond from="CD1" to="HD12" />
  <Bond from="CD1" to="HD11" />
  <Bond from="CD1" to="CG" />
  <Bond from="CD2" to="CG" />
  <Bond from="CD2" to="HD22" />
  <Bond from="CD2" to="HD23" />
  <Bond from="CD2" to="HD21" />
  <Bond from="CG" to="HG" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="LYS" loc="middle" type="protein" tinkerLookupName="Lysine" fullName="Lysine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD" tinkerLookupName="CD" bonds="4" />
  <Atom name="CE" tinkerLookupName="CE" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD3" tinkerLookupName="HD" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE" bonds="1" />
  <Atom name="HE3" tinkerLookupName="HE" bonds="1" />
  <Atom name="HG2" tinkerLookupName="HG" bonds="1" />
  <Atom name="HG3" tinkerLookupName="HG" bonds="1" />
  <Atom name="HZ1" tinkerLookupName="HZ" bonds="1" />
  <Atom name="HZ2" tinkerLookupName="HZ" bonds="1" />
  <Atom name="HZ3" tinkerLookupName="HZ" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="NZ" tinkerLookupName="NZ" bonds="4" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD" to="HD3" />
  <Bond from="CD" to="CG" />
  <Bond from="CD" to="HD2" />
  <Bond from="CD" to="CE" />
  <Bond from="CE" to="NZ" />
  <Bond from="CE" to="HE2" />
  <Bond from="CE" to="HE3" />
  <Bond from="CG" to="HG2" />
  <Bond from="CG" to="HG3" />
  <Bond from="H" to="N" />
  <Bond from="HZ1" to="NZ" />
  <Bond from="HZ2" to="NZ" />
  <Bond from="HZ3" to="NZ" />
  </Residue>
  <Residue abbreviation="LYD" loc="middle" type="protein" tinkerLookupName="Lysine (NH2)" fullName="Lysine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD" tinkerLookupName="CD" bonds="4" />
  <Atom name="CE" tinkerLookupName="CE" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD3" tinkerLookupName="HD" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE" bonds="1" />
  <Atom name="HE3" tinkerLookupName="HE" bonds="1" />
  <Atom name="HG2" tinkerLookupName="HG" bonds="1" />
  <Atom name="HG3" tinkerLookupName="HG" bonds="1" />
  <Atom name="HZ1" tinkerLookupName="HZ" bonds="1" />
  <Atom name="HZ2" tinkerLookupName="HZ" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="NZ" tinkerLookupName="NZ" bonds="4" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD" to="HD3" />
  <Bond from="CD" to="CG" />
  <Bond from="CD" to="HD2" />
  <Bond from="CD" to="CE" />
  <Bond from="CE" to="NZ" />
  <Bond from="CE" to="HE2" />
  <Bond from="CE" to="HE3" />
  <Bond from="CG" to="HG2" />
  <Bond from="CG" to="HG3" />
  <Bond from="H" to="N" />
  <Bond from="HZ1" to="NZ" />
  <Bond from="HZ2" to="NZ" />
  </Residue>
  <Residue abbreviation="MET" loc="middle" type="protein" tinkerLookupName="Methionine" fullName="Methionine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CE" tinkerLookupName="CE" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HE1" tinkerLookupName="HE" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE" bonds="1" />
  <Atom name="HE3" tinkerLookupName="HE" bonds="1" />
  <Atom name="HG2" tinkerLookupName="HG" bonds="1" />
  <Atom name="HG3" tinkerLookupName="HG" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="SD" tinkerLookupName="SD" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CE" to="SD" />
  <Bond from="CE" to="HE1" />
  <Bond from="CE" to="HE2" />
  <Bond from="CE" to="HE3" />
  <Bond from="CG" to="HG2" />
  <Bond from="CG" to="HG3" />
  <Bond from="CG" to="SD" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="PHE" loc="middle" type="protein" tinkerLookupName="Phenylalanine" fullName="Phenylalanine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD1" tinkerLookupName="CD" bonds="3" />
  <Atom name="CD2" tinkerLookupName="CD" bonds="3" />
  <Atom name="CE1" tinkerLookupName="CE" bonds="3" />
  <Atom name="CE2" tinkerLookupName="CE" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="CZ" tinkerLookupName="CZ" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD1" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD" bonds="1" />
  <Atom name="HE1" tinkerLookupName="HE" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE" bonds="1" />
  <Atom name="HZ" tinkerLookupName="HZ" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD1" to="CG" />
  <Bond from="CD1" to="CE1" />
  <Bond from="CD1" to="HD1" />
  <Bond from="CD2" to="CG" />
  <Bond from="CD2" to="CE2" />
  <Bond from="CD2" to="HD2" />
  <Bond from="CE1" to="CZ" />
  <Bond from="CE1" to="HE1" />
  <Bond from="CE2" to="CZ" />
  <Bond from="CE2" to="HE2" />
  <Bond from="CZ" to="HZ" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="PRO" loc="middle" type="protein" tinkerLookupName="Proline" fullName="Proline">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD" tinkerLookupName="CD" bonds="4" />
  <Atom name="CG" tinkerLookupName="CG" bonds="4" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD3" tinkerLookupName="HD" bonds="1" />
  <Atom name="HG2" tinkerLookupName="HG" bonds="1" />
  <Atom name="HG3" tinkerLookupName="HG" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="4" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD" to="CG" />
  <Bond from="CD" to="HD3" />
  <Bond from="CD" to="HD2" />
  <Bond from="CD" to="N" />
  <Bond from="CG" to="HG2" />
  <Bond from="CG" to="HG3" />
  </Residue>
  <Residue abbreviation="SER" loc="middle" type="protein" tinkerLookupName="Serine" fullName="Serine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HG" tinkerLookupName="HG" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OG" tinkerLookupName="OG" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="OG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="H" to="N" />
  <Bond from="HG" to="OG" />
  </Residue>
  <Residue abbreviation="THR" loc="middle" type="protein" tinkerLookupName="Threonine" fullName="Threonine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CG2" tinkerLookupName="CG2" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB" tinkerLookupName="HB" bonds="1" />
  <Atom name="HG1" tinkerLookupName="HG1" bonds="1" />
  <Atom name="HG21" tinkerLookupName="HG2" bonds="1" />
  <Atom name="HG22" tinkerLookupName="HG2" bonds="1" />
  <Atom name="HG23" tinkerLookupName="HG2" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OG1" tinkerLookupName="OG1" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="HB" />
  <Bond from="CB" to="CG2" />
  <Bond from="CB" to="OG1" />
  <Bond from="CG2" to="HG21" />
  <Bond from="CG2" to="HG23" />
  <Bond from="CG2" to="HG22" />
  <Bond from="H" to="N" />
  <Bond from="HG1" to="OG1" />
  </Residue>
  <Residue abbreviation="TRP" loc="middle" type="protein" tinkerLookupName="Tryptophan" fullName="Tryptophan">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD1" tinkerLookupName="CD1" bonds="3" />
  <Atom name="CD2" tinkerLookupName="CD2" bonds="3" />
  <Atom name="CE2" tinkerLookupName="CE2" bonds="3" />
  <Atom name="CE3" tinkerLookupName="CE3" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="CH2" tinkerLookupName="CH2" bonds="3" />
  <Atom name="CZ2" tinkerLookupName="CZ2" bonds="3" />
  <Atom name="CZ3" tinkerLookupName="CZ3" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD1" tinkerLookupName="HD1" bonds="1" />
  <Atom name="HE1" tinkerLookupName="HE1" bonds="1" />
  <Atom name="HE3" tinkerLookupName="HE3" bonds="1" />
  <Atom name="HH2" tinkerLookupName="HH2" bonds="1" />
  <Atom name="HZ2" tinkerLookupName="HZ2" bonds="1" />
  <Atom name="HZ3" tinkerLookupName="HZ3" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="NE1" tinkerLookupName="NE1" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD1" to="CG" />
  <Bond from="CD1" to="HD1" />
  <Bond from="CD1" to="NE1" />
  <Bond from="CD2" to="CE3" />
  <Bond from="CD2" to="CG" />
  <Bond from="CD2" to="CE2" />
  <Bond from="CE2" to="CZ2" />
  <Bond from="CE2" to="NE1" />
  <Bond from="CE3" to="CZ3" />
  <Bond from="CE3" to="HE3" />
  <Bond from="CH2" to="CZ2" />
  <Bond from="CH2" to="HH2" />
  <Bond from="CH2" to="CZ3" />
  <Bond from="CZ2" to="HZ2" />
  <Bond from="CZ3" to="HZ3" />
  <Bond from="H" to="N" />
  <Bond from="HE1" to="NE1" />
  </Residue>
  <Residue abbreviation="TYR" loc="middle" type="protein" tinkerLookupName="Tyrosine" fullName="Tyrosine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD1" tinkerLookupName="CD" bonds="3" />
  <Atom name="CD2" tinkerLookupName="CD" bonds="3" />
  <Atom name="CE1" tinkerLookupName="CE" bonds="3" />
  <Atom name="CE2" tinkerLookupName="CE" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="CZ" tinkerLookupName="CZ" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD1" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD" bonds="1" />
  <Atom name="HE1" tinkerLookupName="HE" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE" bonds="1" />
  <Atom name="HH" tinkerLookupName="HH" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OH" tinkerLookupName="OH" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD1" to="CG" />
  <Bond from="CD1" to="CE1" />
  <Bond from="CD1" to="HD1" />
  <Bond from="CD2" to="CG" />
  <Bond from="CD2" to="CE2" />
  <Bond from="CD2" to="HD2" />
  <Bond from="CE1" to="CZ" />
  <Bond from="CE1" to="HE1" />
  <Bond from="CE2" to="CZ" />
  <Bond from="CE2" to="HE2" />
  <Bond from="CZ" to="OH" />
  <Bond from="H" to="N" />
  <Bond from="HH" to="OH" />
  </Residue>
  <Residue abbreviation="TYD" loc="middle" type="protein" tinkerLookupName="Tyrosine (O-)" fullName="Tyrosine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CD1" tinkerLookupName="CD" bonds="3" />
  <Atom name="CD2" tinkerLookupName="CD" bonds="3" />
  <Atom name="CE1" tinkerLookupName="CE" bonds="3" />
  <Atom name="CE2" tinkerLookupName="CE" bonds="3" />
  <Atom name="CG" tinkerLookupName="CG" bonds="3" />
  <Atom name="CZ" tinkerLookupName="CZ" bonds="3" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB2" tinkerLookupName="HB" bonds="1" />
  <Atom name="HB3" tinkerLookupName="HB" bonds="1" />
  <Atom name="HD1" tinkerLookupName="HD" bonds="1" />
  <Atom name="HD2" tinkerLookupName="HD" bonds="1" />
  <Atom name="HE1" tinkerLookupName="HE" bonds="1" />
  <Atom name="HE2" tinkerLookupName="HE" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Atom name="OH" tinkerLookupName="OH" bonds="2" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG" />
  <Bond from="CB" to="HB3" />
  <Bond from="CB" to="HB2" />
  <Bond from="CD1" to="CG" />
  <Bond from="CD1" to="CE1" />
  <Bond from="CD1" to="HD1" />
  <Bond from="CD2" to="CG" />
  <Bond from="CD2" to="CE2" />
  <Bond from="CD2" to="HD2" />
  <Bond from="CE1" to="CZ" />
  <Bond from="CE1" to="HE1" />
  <Bond from="CE2" to="CZ" />
  <Bond from="CE2" to="HE2" />
  <Bond from="CZ" to="OH" />
  <Bond from="H" to="N" />
  </Residue>
  <Residue abbreviation="VAL" loc="middle" type="protein" tinkerLookupName="Valine" fullName="Valine">
  <Atom name="C" tinkerLookupName="C" bonds="3" />
  <Atom name="CA" tinkerLookupName="CA" bonds="4" />
  <Atom name="CB" tinkerLookupName="CB" bonds="4" />
  <Atom name="CG1" tinkerLookupName="CG1" bonds="4" />
  <Atom name="CG2" tinkerLookupName="CG2" bonds="4" />
  <Atom name="H" tinkerLookupName="HN" bonds="1" />
  <Atom name="HA" tinkerLookupName="HA" bonds="1" />
  <Atom name="HB" tinkerLookupName="HB" bonds="1" />
  <Atom name="HG11" tinkerLookupName="HG1" bonds="1" />
  <Atom name="HG12" tinkerLookupName="HG1" bonds="1" />
  <Atom name="HG13" tinkerLookupName="HG1" bonds="1" />
  <Atom name="HG21" tinkerLookupName="HG2" bonds="1" />
  <Atom name="HG22" tinkerLookupName="HG2" bonds="1" />
  <Atom name="HG23" tinkerLookupName="HG2" bonds="1" />
  <Atom name="N" tinkerLookupName="N" bonds="3" />
  <Atom name="O" tinkerLookupName="O" bonds="1" />
  <Bond from="C" to="CA" />
  <Bond from="C" to="O" />
  <Bond from="CA" to="CB" />
  <Bond from="CA" to="HA" />
  <Bond from="CA" to="N" />
  <Bond from="CB" to="CG1" />
  <Bond from="CB" to="HB" />
  <Bond from="CB" to="CG2" />
  <Bond from="CG1" to="HG11" />
  <Bond from="CG1" to="HG12" />
  <Bond from="CG1" to="HG13" />
  <Bond from="CG2" to="HG21" />
  <Bond from="CG2" to="HG23" />
  <Bond from="CG2" to="HG22" />
  <Bond from="H" to="N" />
  </Residue>
 <Residue abbreviation="DA" loc="middle" type="dna" tinkerLookupName="Deoxyadenosine" fullName="Deoxyadenosine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="N6" tinkerLookupName="N6"/>
  <Atom name="H61" tinkerLookupName="H61"/>
  <Atom name="H62" tinkerLookupName="H62"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="H2" tinkerLookupName="H2"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="N6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N6" to="H61"/>
  <Bond from="N6" to="H62"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="H2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
 </Residue>
 <Residue abbreviation="DA3" loc="3" type="dna" tinkerLookupName="Deoxyadenosine" fullName="Deoxyadenosine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="N6" tinkerLookupName="N6"/>
  <Atom name="H61" tinkerLookupName="H61"/>
  <Atom name="H62" tinkerLookupName="H62"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="H2" tinkerLookupName="H2"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="N6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N6" to="H61"/>
  <Bond from="N6" to="H62"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="H2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="DA5" loc="5" type="dna" tinkerLookupName="Deoxyadenosine" fullName="Deoxyadenosine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="N6" tinkerLookupName="N6"/>
  <Atom name="H61" tinkerLookupName="H61"/>
  <Atom name="H62" tinkerLookupName="H62"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="H2" tinkerLookupName="H2"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="N6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N6" to="H61"/>
  <Bond from="N6" to="H62"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="H2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
 </Residue>
 <Residue abbreviation="DAN" loc="N" type="dna" tinkerLookupName="Deoxyadenosine" fullName="Deoxyadenosine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="N6" tinkerLookupName="N6"/>
  <Atom name="H61" tinkerLookupName="H61"/>
  <Atom name="H62" tinkerLookupName="H62"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="H2" tinkerLookupName="H2"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="N6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N6" to="H61"/>
  <Bond from="N6" to="H62"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="H2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="DC" loc="middle" type="dna" tinkerLookupName="Deoxycytidine" fullName="Deoxycytidine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="N4" tinkerLookupName="N4"/>
  <Atom name="H41" tinkerLookupName="H41"/>
  <Atom name="H42" tinkerLookupName="H42"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="N4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N4" to="H41"/>
  <Bond from="N4" to="H42"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
 </Residue>
 <Residue abbreviation="DC3" loc="3" type="dna" tinkerLookupName="Deoxycytidine" fullName="Deoxycytidine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="N4" tinkerLookupName="N4"/>
  <Atom name="H41" tinkerLookupName="H41"/>
  <Atom name="H42" tinkerLookupName="H42"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="N4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N4" to="H41"/>
  <Bond from="N4" to="H42"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="DC5" loc="5" type="dna" tinkerLookupName="Deoxycytidine" fullName="Deoxycytidine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="N4" tinkerLookupName="N4"/>
  <Atom name="H41" tinkerLookupName="H41"/>
  <Atom name="H42" tinkerLookupName="H42"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="N4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N4" to="H41"/>
  <Bond from="N4" to="H42"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
 </Residue>
 <Residue abbreviation="DCN" loc="N" type="dna" tinkerLookupName="Deoxycytidine" fullName="Deoxycytidine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="N4" tinkerLookupName="N4"/>
  <Atom name="H41" tinkerLookupName="H41"/>
  <Atom name="H42" tinkerLookupName="H42"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="N4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N4" to="H41"/>
  <Bond from="N4" to="H42"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="DG" loc="middle" type="dna" tinkerLookupName="Deoxyguanosine" fullName="Deoxyguanosine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="O6" tinkerLookupName="O6"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="H1" tinkerLookupName="H1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="N2" tinkerLookupName="N2"/>
  <Atom name="H21" tinkerLookupName="H21"/>
  <Atom name="H22" tinkerLookupName="H22"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="O6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N1" to="H1"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="N2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N2" to="H21"/>
  <Bond from="N2" to="H22"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
 </Residue>
 <Residue abbreviation="DG3" loc="3" type="dna" tinkerLookupName="Deoxyguanosine" fullName="Deoxyguanosine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="O6" tinkerLookupName="O6"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="H1" tinkerLookupName="H1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="N2" tinkerLookupName="N2"/>
  <Atom name="H21" tinkerLookupName="H21"/>
  <Atom name="H22" tinkerLookupName="H22"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="O6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N1" to="H1"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="N2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N2" to="H21"/>
  <Bond from="N2" to="H22"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="DG5" loc="5" type="dna" tinkerLookupName="Deoxyguanosine" fullName="Deoxyguanosine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="O6" tinkerLookupName="O6"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="H1" tinkerLookupName="H1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="N2" tinkerLookupName="N2"/>
  <Atom name="H21" tinkerLookupName="H21"/>
  <Atom name="H22" tinkerLookupName="H22"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="O6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N1" to="H1"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="N2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N2" to="H21"/>
  <Bond from="N2" to="H22"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
 </Residue>
 <Residue abbreviation="DGN" loc="N" type="dna" tinkerLookupName="Deoxyguanosine" fullName="Deoxyguanosine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="O6" tinkerLookupName="O6"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="H1" tinkerLookupName="H1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="N2" tinkerLookupName="N2"/>
  <Atom name="H21" tinkerLookupName="H21"/>
  <Atom name="H22" tinkerLookupName="H22"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="O6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N1" to="H1"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="N2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N2" to="H21"/>
  <Bond from="N2" to="H22"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="DT" loc="middle" type="dna" tinkerLookupName="Deoxythymidine" fullName="Deoxythymidine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C7" tinkerLookupName="C7"/>
  <Atom name="H71" tinkerLookupName="H7"/>
  <Atom name="H72" tinkerLookupName="H7"/>
  <Atom name="H73" tinkerLookupName="H7"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="O4" tinkerLookupName="O4"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="H3" tinkerLookupName="H3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="C7"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C7" to="H71"/>
  <Bond from="C7" to="H72"/>
  <Bond from="C7" to="H73"/>
  <Bond from="C4" to="O4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N3" to="H3"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
 </Residue>
 <Residue abbreviation="DT3" loc="3" type="dna" tinkerLookupName="Deoxythymidine" fullName="Deoxythymidine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C7" tinkerLookupName="C7"/>
  <Atom name="H71" tinkerLookupName="H7"/>
  <Atom name="H72" tinkerLookupName="H7"/>
  <Atom name="H73" tinkerLookupName="H7"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="O4" tinkerLookupName="O4"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="H3" tinkerLookupName="H3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="C7"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C7" to="H71"/>
  <Bond from="C7" to="H72"/>
  <Bond from="C7" to="H73"/>
  <Bond from="C4" to="O4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N3" to="H3"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="DT5" loc="5" type="dna" tinkerLookupName="Deoxythymidine" fullName="Deoxythymidine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C7" tinkerLookupName="C7"/>
  <Atom name="H71" tinkerLookupName="H7"/>
  <Atom name="H72" tinkerLookupName="H7"/>
  <Atom name="H73" tinkerLookupName="H7"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="O4" tinkerLookupName="O4"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="H3" tinkerLookupName="H3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="C7"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C7" to="H71"/>
  <Bond from="C7" to="H72"/>
  <Bond from="C7" to="H73"/>
  <Bond from="C4" to="O4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N3" to="H3"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
 </Residue>
 <Residue abbreviation="DTN" loc="N" type="dna" tinkerLookupName="Deoxythymidine" fullName="Deoxythymidine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C7" tinkerLookupName="C7"/>
  <Atom name="H71" tinkerLookupName="H7"/>
  <Atom name="H72" tinkerLookupName="H7"/>
  <Atom name="H73" tinkerLookupName="H7"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="O4" tinkerLookupName="O4"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="H3" tinkerLookupName="H3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="H2''" tinkerLookupName="H2**"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="C7"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C7" to="H71"/>
  <Bond from="C7" to="H72"/>
  <Bond from="C7" to="H73"/>
  <Bond from="C4" to="O4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N3" to="H3"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="H2''"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="RA" loc="middle" type="rna" tinkerLookupName="Adenosine" fullName="Adenosine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="N6" tinkerLookupName="N6"/>
  <Atom name="H61" tinkerLookupName="H61"/>
  <Atom name="H62" tinkerLookupName="H62"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="H2" tinkerLookupName="H2"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="N6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N6" to="H61"/>
  <Bond from="N6" to="H62"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="H2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
 </Residue>
 <Residue abbreviation="RA3" loc="3" type="rna" tinkerLookupName="Adenosine" fullName="Adenosine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="N6" tinkerLookupName="N6"/>
  <Atom name="H61" tinkerLookupName="H61"/>
  <Atom name="H62" tinkerLookupName="H62"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="H2" tinkerLookupName="H2"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="N6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N6" to="H61"/>
  <Bond from="N6" to="H62"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="H2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="RA5" loc="5" type="rna" tinkerLookupName="Adenosine" fullName="Adenosine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="N6" tinkerLookupName="N6"/>
  <Atom name="H61" tinkerLookupName="H61"/>
  <Atom name="H62" tinkerLookupName="H62"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="H2" tinkerLookupName="H2"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="N6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N6" to="H61"/>
  <Bond from="N6" to="H62"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="H2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
 </Residue>
 <Residue abbreviation="RAN" loc="N" type="rna" tinkerLookupName="Adenosine" fullName="Adenosine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="N6" tinkerLookupName="N6"/>
  <Atom name="H61" tinkerLookupName="H61"/>
  <Atom name="H62" tinkerLookupName="H62"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="H2" tinkerLookupName="H2"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="N6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N6" to="H61"/>
  <Bond from="N6" to="H62"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="H2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="RC" loc="middle" type="rna" tinkerLookupName="Cytidine" fullName="Cytidine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="N4" tinkerLookupName="N4"/>
  <Atom name="H41" tinkerLookupName="H41"/>
  <Atom name="H42" tinkerLookupName="H42"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="N4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N4" to="H41"/>
  <Bond from="N4" to="H42"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
 </Residue>
 <Residue abbreviation="RC3" loc="3" type="rna" tinkerLookupName="Cytidine" fullName="Cytidine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="N4" tinkerLookupName="N4"/>
  <Atom name="H41" tinkerLookupName="H41"/>
  <Atom name="H42" tinkerLookupName="H42"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="N4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N4" to="H41"/>
  <Bond from="N4" to="H42"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="RC5" loc="5" type="rna" tinkerLookupName="Cytidine" fullName="Cytidine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="N4" tinkerLookupName="N4"/>
  <Atom name="H41" tinkerLookupName="H41"/>
  <Atom name="H42" tinkerLookupName="H42"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="N4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N4" to="H41"/>
  <Bond from="N4" to="H42"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
 </Residue>
 <Residue abbreviation="RCN" loc="N" type="rna" tinkerLookupName="Cytidine" fullName="Cytidine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="N4" tinkerLookupName="N4"/>
  <Atom name="H41" tinkerLookupName="H41"/>
  <Atom name="H42" tinkerLookupName="H42"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="N4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N4" to="H41"/>
  <Bond from="N4" to="H42"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="RG" loc="middle" type="rna" tinkerLookupName="Guanosine" fullName="Guanosine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="O6" tinkerLookupName="O6"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="H1" tinkerLookupName="H1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="N2" tinkerLookupName="N2"/>
  <Atom name="H21" tinkerLookupName="H21"/>
  <Atom name="H22" tinkerLookupName="H22"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="O6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N1" to="H1"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="N2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N2" to="H21"/>
  <Bond from="N2" to="H22"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
 </Residue>
 <Residue abbreviation="RG3" loc="3" type="rna" tinkerLookupName="Guanosine" fullName="Guanosine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="O6" tinkerLookupName="O6"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="H1" tinkerLookupName="H1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="N2" tinkerLookupName="N2"/>
  <Atom name="H21" tinkerLookupName="H21"/>
  <Atom name="H22" tinkerLookupName="H22"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="O6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N1" to="H1"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="N2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N2" to="H21"/>
  <Bond from="N2" to="H22"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="RG5" loc="5" type="rna" tinkerLookupName="Guanosine" fullName="Guanosine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="O6" tinkerLookupName="O6"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="H1" tinkerLookupName="H1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="N2" tinkerLookupName="N2"/>
  <Atom name="H21" tinkerLookupName="H21"/>
  <Atom name="H22" tinkerLookupName="H22"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="O6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N1" to="H1"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="N2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N2" to="H21"/>
  <Bond from="N2" to="H22"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
 </Residue>
 <Residue abbreviation="RGN" loc="N" type="rna" tinkerLookupName="Guanosine" fullName="Guanosine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N9" tinkerLookupName="N9"/>
  <Atom name="C8" tinkerLookupName="C8"/>
  <Atom name="H8" tinkerLookupName="H8"/>
  <Atom name="N7" tinkerLookupName="N7"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="O6" tinkerLookupName="O6"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="H1" tinkerLookupName="H1"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="N2" tinkerLookupName="N2"/>
  <Atom name="H21" tinkerLookupName="H21"/>
  <Atom name="H22" tinkerLookupName="H22"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N9"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N9" to="C8"/>
  <Bond from="N9" to="C4"/>
  <Bond from="C8" to="H8"/>
  <Bond from="C8" to="N7"/>
  <Bond from="N7" to="C5"/>
  <Bond from="C5" to="C6"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C6" to="O6"/>
  <Bond from="C6" to="N1"/>
  <Bond from="N1" to="H1"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C2" to="N2"/>
  <Bond from="C2" to="N3"/>
  <Bond from="N2" to="H21"/>
  <Bond from="N2" to="H22"/>
  <Bond from="N3" to="C4"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="RU" loc="middle" type="rna" tinkerLookupName="Uridine" fullName="Uridine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="O4" tinkerLookupName="O4"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="H3" tinkerLookupName="H3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="O4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N3" to="H3"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
 </Residue>
 <Residue abbreviation="RU3" loc="3" type="rna" tinkerLookupName="Uridine" fullName="Uridine">
  <Atom name="P" tinkerLookupName="P"/>
  <Atom name="O1P" tinkerLookupName="OP"/>
  <Atom name="O2P" tinkerLookupName="OP"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="O4" tinkerLookupName="O4"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="H3" tinkerLookupName="H3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="P" to="O1P"/>
  <Bond from="P" to="O2P"/>
  <Bond from="P" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="O4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N3" to="H3"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
 <Residue abbreviation="RU5" loc="5" type="rna" tinkerLookupName="Uridine" fullName="Uridine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="O4" tinkerLookupName="O4"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="H3" tinkerLookupName="H3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="O4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N3" to="H3"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
 </Residue>
 <Residue abbreviation="RUN" loc="N" type="rna" tinkerLookupName="Uridine" fullName="Uridine">
  <Atom name="H5T" tinkerLookupName="H5T"/>
  <Atom name="O5'" tinkerLookupName="O5*"/>
  <Atom name="C5'" tinkerLookupName="C5*"/>
  <Atom name="H5'" tinkerLookupName="H5*"/>
  <Atom name="H5''" tinkerLookupName="H5**"/>
  <Atom name="C4'" tinkerLookupName="C4*"/>
  <Atom name="H4'" tinkerLookupName="H4*"/>
  <Atom name="O4'" tinkerLookupName="O4*"/>
  <Atom name="C1'" tinkerLookupName="C1*"/>
  <Atom name="H1'" tinkerLookupName="H1*"/>
  <Atom name="N1" tinkerLookupName="N1"/>
  <Atom name="C6" tinkerLookupName="C6"/>
  <Atom name="H6" tinkerLookupName="H6"/>
  <Atom name="C5" tinkerLookupName="C5"/>
  <Atom name="H5" tinkerLookupName="H5"/>
  <Atom name="C4" tinkerLookupName="C4"/>
  <Atom name="O4" tinkerLookupName="O4"/>
  <Atom name="N3" tinkerLookupName="N3"/>
  <Atom name="H3" tinkerLookupName="H3"/>
  <Atom name="C2" tinkerLookupName="C2"/>
  <Atom name="O2" tinkerLookupName="O2"/>
  <Atom name="C3'" tinkerLookupName="C3*"/>
  <Atom name="H3'" tinkerLookupName="H3*"/>
  <Atom name="C2'" tinkerLookupName="C2*"/>
  <Atom name="H2'" tinkerLookupName="H2*"/>
  <Atom name="O2'" tinkerLookupName="O2*"/>
  <Atom name="HO2'" tinkerLookupName="HO*"/>
  <Atom name="O3'" tinkerLookupName="O3*"/>
  <Atom name="H3T" tinkerLookupName="H3T"/>
  <Bond from="H5T" to="O5'"/>
  <Bond from="O5'" to="C5'"/>
  <Bond from="C5'" to="H5'"/>
  <Bond from="C5'" to="H5''"/>
  <Bond from="C5'" to="C4'"/>
  <Bond from="C4'" to="H4'"/>
  <Bond from="C4'" to="O4'"/>
  <Bond from="C4'" to="C3'"/>
  <Bond from="O4'" to="C1'"/>
  <Bond from="C1'" to="H1'"/>
  <Bond from="C1'" to="N1"/>
  <Bond from="C1'" to="C2'"/>
  <Bond from="N1" to="C6"/>
  <Bond from="N1" to="C2"/>
  <Bond from="C6" to="H6"/>
  <Bond from="C6" to="C5"/>
  <Bond from="C5" to="H5"/>
  <Bond from="C5" to="C4"/>
  <Bond from="C4" to="O4"/>
  <Bond from="C4" to="N3"/>
  <Bond from="N3" to="H3"/>
  <Bond from="N3" to="C2"/>
  <Bond from="C2" to="O2"/>
  <Bond from="C3'" to="H3'"/>
  <Bond from="C3'" to="C2'"/>
  <Bond from="C3'" to="O3'"/>
  <Bond from="C2'" to="H2'"/>
  <Bond from="C2'" to="O2'"/>
  <Bond from="O2'" to="HO2'"/>
  <Bond from="O3'" to="H3T"/>
 </Residue>
</Residues>
